| Literature DB >> 22199888 |
Akbar Raissi Shabari, Mehrdad Pourayoubi, Farnaz Ghoreishi, Banafsheh Vahdani.
Abstract
The P atom in the title mol-ecule, C(12)H(26)N(3)OP, has a distorted tetra-hedral configuration: its bond angles lie in the range 101.1 (2)-119.1 (2)°. The P-N bonds to the two cyclo-pentyl-amido moieties are significantly different [1.619 (4) and 1.643 (4) Å], with the shorter bond related to an anti orientation of the lone electron pair of the corresponding N atom relative to the P=O bond. The O atom of the P=O group acts as a double hydrogen-bond acceptor and is involved in two different inter-molecular N-H⋯O(P) hydrogen bonds, building R(2) (2)(8) rings that are further linked into chains along [001].Entities:
Year: 2011 PMID: 22199888 PMCID: PMC3239040 DOI: 10.1107/S1600536811048549
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H26N3OP | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2ac | Cell parameters from 2536 reflections |
| θ = 2.0–27.5° | |
| µ = 0.18 mm−1 | |
| Needle, colourless | |
| 0.35 × 0.11 × 0.05 mm |
| Stoe IPDS 2T Image Plate diffractometer | 2573 independent reflections |
| Radiation source: fine-focus sealed tube | 1482 reflections with |
| graphite | |
| Detector resolution: 0.15 pixels mm-1 | θmax = 25.5°, θmin = 2.2° |
| ω scans | |
| Absorption correction: multi-scan [ | |
| 7303 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2573 reflections | Δρmax = 0.16 e Å−3 |
| 151 parameters | Δρmin = −0.23 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1093 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: −0.20 (18) |
| Experimental. IR (KBr, cm-1): 3290, 3151, 2955, 2866, 2835, 2794, 1459, 1291, 1197, 1159, 1107, 1090, 1030, 993, 932, 889, 762, 703, 555, 496, 464. |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| P1 | 0.83134 (10) | 1.79029 (6) | 0.70933 (17) | 0.0402 (3) | |
| O1 | 0.6995 (2) | 1.78019 (14) | 0.7413 (4) | 0.0476 (9) | |
| N1 | 0.8963 (4) | 1.73464 (16) | 0.5707 (5) | 0.0418 (10) | |
| H1 | 0.8771 | 1.7422 | 0.4700 | 0.050* | |
| N2 | 0.9056 (3) | 1.77094 (19) | 0.8814 (5) | 0.0452 (10) | |
| H2 | 0.8616 | 1.7816 | 0.9651 | 0.054* | |
| N3 | 0.8558 (4) | 1.8809 (2) | 0.6328 (4) | 0.0545 (12) | |
| C1 | 0.9062 (4) | 1.6462 (2) | 0.5936 (6) | 0.0458 (12) | |
| H1A | 0.9222 | 1.6352 | 0.7108 | 0.055* | |
| C2 | 1.0064 (5) | 1.6094 (3) | 0.4926 (9) | 0.088 (2) | |
| H2A | 1.0841 | 1.6147 | 0.5489 | 0.106* | |
| H2B | 1.0121 | 1.6354 | 0.3854 | 0.106* | |
| C3 | 0.9725 (6) | 1.5223 (3) | 0.4730 (10) | 0.100 (2) | |
| H3A | 0.9884 | 1.5046 | 0.3606 | 0.121* | |
| H3B | 1.0201 | 1.4894 | 0.5481 | 0.121* | |
| C4 | 0.8410 (6) | 1.5149 (3) | 0.5115 (10) | 0.096 (2) | |
| H4A | 0.8291 | 1.4821 | 0.6093 | 0.115* | |
| H4B | 0.7979 | 1.4903 | 0.4197 | 0.115* | |
| C5 | 0.7943 (5) | 1.5994 (2) | 0.5411 (7) | 0.0678 (17) | |
| H5A | 0.7594 | 1.6216 | 0.4408 | 0.081* | |
| H5B | 0.7328 | 1.5999 | 0.6275 | 0.081* | |
| C6 | 1.0370 (4) | 1.7749 (2) | 0.9067 (6) | 0.0480 (12) | |
| H6A | 1.0773 | 1.7747 | 0.7984 | 0.058* | |
| C7 | 1.0855 (5) | 1.7061 (3) | 1.0069 (7) | 0.0700 (15) | |
| H7A | 1.0208 | 1.6825 | 1.0729 | 0.084* | |
| H7B | 1.1188 | 1.6650 | 0.9348 | 0.084* | |
| C8 | 1.1810 (7) | 1.7386 (4) | 1.1141 (11) | 0.139 (2) | |
| H8A | 1.1771 | 1.7136 | 1.2224 | 0.167* | |
| H8B | 1.2607 | 1.7279 | 1.0669 | 0.167* | |
| C9 | 1.1626 (7) | 1.8212 (4) | 1.1282 (9) | 0.139 (2) | |
| H9A | 1.2401 | 1.8488 | 1.1166 | 0.167* | |
| H9B | 1.1302 | 1.8334 | 1.2371 | 0.167* | |
| C10 | 1.0791 (5) | 1.8495 (2) | 1.0034 (8) | 0.0702 (17) | |
| H10A | 1.1195 | 1.8872 | 0.9301 | 0.084* | |
| H10B | 1.0099 | 1.8761 | 1.0544 | 0.084* | |
| C11 | 0.9700 (5) | 1.9066 (3) | 0.5626 (8) | 0.0808 (19) | |
| H11A | 0.9552 | 1.9478 | 0.4820 | 0.121* | |
| H11B | 1.0094 | 1.8619 | 0.5103 | 0.121* | |
| H11C | 1.0215 | 1.9274 | 0.6487 | 0.121* | |
| C12 | 0.7793 (6) | 1.9460 (2) | 0.6916 (10) | 0.093 (2) | |
| H12A | 0.7768 | 1.9877 | 0.6098 | 0.139* | |
| H12B | 0.8122 | 1.9669 | 0.7929 | 0.139* | |
| H12C | 0.6982 | 1.9263 | 0.7109 | 0.139* |
| P1 | 0.0424 (6) | 0.0398 (4) | 0.0385 (6) | −0.0033 (5) | −0.0014 (9) | 0.0013 (7) |
| O1 | 0.0381 (18) | 0.0585 (16) | 0.046 (3) | −0.0026 (13) | −0.0026 (18) | 0.0068 (16) |
| N1 | 0.054 (3) | 0.0364 (17) | 0.035 (2) | −0.0031 (17) | 0.000 (2) | 0.0055 (17) |
| N2 | 0.039 (3) | 0.057 (2) | 0.039 (2) | −0.0055 (19) | 0.006 (2) | −0.0082 (19) |
| N3 | 0.060 (3) | 0.0419 (19) | 0.061 (3) | −0.0004 (19) | 0.010 (2) | 0.0020 (16) |
| C1 | 0.058 (3) | 0.042 (2) | 0.037 (3) | 0.010 (2) | −0.002 (3) | 0.001 (2) |
| C2 | 0.073 (4) | 0.060 (3) | 0.131 (6) | 0.006 (3) | 0.038 (5) | 0.004 (4) |
| C3 | 0.112 (6) | 0.067 (4) | 0.122 (6) | 0.022 (3) | 0.016 (6) | −0.035 (4) |
| C4 | 0.098 (5) | 0.051 (3) | 0.140 (7) | 0.007 (3) | −0.010 (6) | −0.012 (3) |
| C5 | 0.057 (4) | 0.052 (3) | 0.095 (5) | −0.002 (2) | −0.006 (3) | −0.002 (3) |
| C6 | 0.038 (3) | 0.050 (3) | 0.056 (3) | 0.000 (2) | −0.004 (3) | 0.001 (2) |
| C7 | 0.068 (4) | 0.058 (3) | 0.085 (4) | 0.005 (3) | −0.017 (4) | 0.007 (3) |
| C8 | 0.158 (6) | 0.107 (3) | 0.154 (5) | 0.012 (4) | −0.095 (5) | −0.004 (3) |
| C9 | 0.158 (6) | 0.107 (3) | 0.154 (5) | 0.012 (4) | −0.095 (5) | −0.004 (3) |
| C10 | 0.064 (4) | 0.047 (3) | 0.099 (5) | −0.007 (2) | −0.017 (4) | −0.016 (3) |
| C11 | 0.086 (5) | 0.059 (3) | 0.097 (5) | −0.016 (3) | 0.005 (4) | 0.025 (3) |
| C12 | 0.129 (5) | 0.052 (3) | 0.098 (6) | 0.015 (3) | 0.034 (6) | −0.001 (4) |
| P1—O1 | 1.478 (3) | C5—H5A | 0.9700 |
| P1—N1 | 1.619 (4) | C5—H5B | 0.9700 |
| P1—N2 | 1.643 (4) | C6—C7 | 1.500 (6) |
| P1—N3 | 1.653 (4) | C6—C10 | 1.539 (6) |
| N1—C1 | 1.489 (4) | C6—H6A | 0.9800 |
| N1—H1 | 0.8499 | C7—C8 | 1.463 (8) |
| N2—C6 | 1.456 (5) | C7—H7A | 0.9700 |
| N2—H2 | 0.8489 | C7—H7B | 0.9700 |
| N3—C11 | 1.440 (6) | C8—C9 | 1.395 (8) |
| N3—C12 | 1.451 (6) | C8—H8A | 0.9700 |
| C1—C2 | 1.499 (7) | C8—H8B | 0.9700 |
| C1—C5 | 1.515 (6) | C9—C10 | 1.441 (7) |
| C1—H1A | 0.9800 | C9—H9A | 0.9700 |
| C2—C3 | 1.508 (6) | C9—H9B | 0.9700 |
| C2—H2A | 0.9700 | C10—H10A | 0.9700 |
| C2—H2B | 0.9700 | C10—H10B | 0.9700 |
| C3—C4 | 1.480 (8) | C11—H11A | 0.9600 |
| C3—H3A | 0.9700 | C11—H11B | 0.9600 |
| C3—H3B | 0.9700 | C11—H11C | 0.9600 |
| C4—C5 | 1.516 (6) | C12—H12A | 0.9600 |
| C4—H4A | 0.9700 | C12—H12B | 0.9600 |
| C4—H4B | 0.9700 | C12—H12C | 0.9600 |
| O1—P1—N1 | 119.06 (19) | H5A—C5—H5B | 108.9 |
| O1—P1—N2 | 108.3 (2) | N2—C6—C7 | 113.0 (4) |
| N1—P1—N2 | 104.78 (19) | N2—C6—C10 | 113.9 (4) |
| O1—P1—N3 | 109.13 (18) | C7—C6—C10 | 103.7 (4) |
| N1—P1—N3 | 101.13 (19) | N2—C6—H6A | 108.7 |
| N2—P1—N3 | 114.55 (18) | C7—C6—H6A | 108.7 |
| C1—N1—P1 | 120.9 (3) | C10—C6—H6A | 108.7 |
| C1—N1—H1 | 106.5 | C8—C7—C6 | 106.9 (4) |
| P1—N1—H1 | 117.9 | C8—C7—H7A | 110.3 |
| C6—N2—P1 | 126.8 (3) | C6—C7—H7A | 110.3 |
| C6—N2—H2 | 116.2 | C8—C7—H7B | 110.3 |
| P1—N2—H2 | 110.6 | C6—C7—H7B | 110.3 |
| C11—N3—C12 | 114.1 (4) | H7A—C7—H7B | 108.6 |
| C11—N3—P1 | 124.1 (3) | C9—C8—C7 | 108.1 (6) |
| C12—N3—P1 | 117.8 (3) | C9—C8—H8A | 110.1 |
| N1—C1—C2 | 113.0 (4) | C7—C8—H8A | 110.1 |
| N1—C1—C5 | 114.6 (4) | C9—C8—H8B | 110.1 |
| C2—C1—C5 | 103.3 (4) | C7—C8—H8B | 110.1 |
| N1—C1—H1A | 108.6 | H8A—C8—H8B | 108.4 |
| C2—C1—H1A | 108.6 | C8—C9—C10 | 110.9 (6) |
| C5—C1—H1A | 108.6 | C8—C9—H9A | 109.5 |
| C1—C2—C3 | 105.7 (4) | C10—C9—H9A | 109.5 |
| C1—C2—H2A | 110.6 | C8—C9—H9B | 109.5 |
| C3—C2—H2A | 110.6 | C10—C9—H9B | 109.5 |
| C1—C2—H2B | 110.6 | H9A—C9—H9B | 108.0 |
| C3—C2—H2B | 110.6 | C9—C10—C6 | 106.4 (4) |
| H2A—C2—H2B | 108.7 | C9—C10—H10A | 110.5 |
| C4—C3—C2 | 107.3 (4) | C6—C10—H10A | 110.5 |
| C4—C3—H3A | 110.3 | C9—C10—H10B | 110.5 |
| C2—C3—H3A | 110.3 | C6—C10—H10B | 110.5 |
| C4—C3—H3B | 110.3 | H10A—C10—H10B | 108.6 |
| C2—C3—H3B | 110.3 | N3—C11—H11A | 109.5 |
| H3A—C3—H3B | 108.5 | N3—C11—H11B | 109.5 |
| C3—C4—C5 | 106.6 (4) | H11A—C11—H11B | 109.5 |
| C3—C4—H4A | 110.4 | N3—C11—H11C | 109.5 |
| C5—C4—H4A | 110.4 | H11A—C11—H11C | 109.5 |
| C3—C4—H4B | 110.4 | H11B—C11—H11C | 109.5 |
| C5—C4—H4B | 110.4 | N3—C12—H12A | 109.5 |
| H4A—C4—H4B | 108.6 | N3—C12—H12B | 109.5 |
| C1—C5—C4 | 104.4 (4) | H12A—C12—H12B | 109.5 |
| C1—C5—H5A | 110.9 | N3—C12—H12C | 109.5 |
| C4—C5—H5A | 110.9 | H12A—C12—H12C | 109.5 |
| C1—C5—H5B | 110.9 | H12B—C12—H12C | 109.5 |
| C4—C5—H5B | 110.9 | ||
| O1—P1—N1—C1 | −65.4 (4) | C5—C1—C2—C3 | −32.8 (6) |
| N2—P1—N1—C1 | 55.8 (4) | C1—C2—C3—C4 | 17.9 (8) |
| N3—P1—N1—C1 | 175.1 (3) | C2—C3—C4—C5 | 4.3 (8) |
| O1—P1—N2—C6 | −178.9 (3) | N1—C1—C5—C4 | 158.6 (5) |
| N1—P1—N2—C6 | 53.0 (4) | C2—C1—C5—C4 | 35.2 (6) |
| N3—P1—N2—C6 | −56.8 (4) | C3—C4—C5—C1 | −24.6 (7) |
| O1—P1—N3—C11 | −169.5 (4) | P1—N2—C6—C7 | −138.0 (4) |
| N1—P1—N3—C11 | −43.2 (4) | P1—N2—C6—C10 | 104.0 (5) |
| N2—P1—N3—C11 | 68.9 (4) | N2—C6—C7—C8 | −142.0 (5) |
| O1—P1—N3—C12 | 34.3 (5) | C10—C6—C7—C8 | −18.2 (6) |
| N1—P1—N3—C12 | 160.6 (4) | C6—C7—C8—C9 | 20.8 (8) |
| N2—P1—N3—C12 | −87.3 (4) | C7—C8—C9—C10 | −14.8 (9) |
| P1—N1—C1—C2 | −158.0 (4) | C8—C9—C10—C6 | 2.8 (8) |
| P1—N1—C1—C5 | 84.1 (5) | N2—C6—C10—C9 | 132.9 (5) |
| N1—C1—C2—C3 | −157.2 (5) | C7—C6—C10—C9 | 9.7 (6) |
| H··· | ||||
| N1—H1···O1i | 0.85 | 2.13 | 2.960 (5) | 167 |
| N2—H2···O1ii | 0.85 | 2.33 | 3.131 (5) | 158 |
| C11—H11B···N1 | 0.96 | 2.50 | 2.978 (6) | 110 |
| C12—H12C···O1 | 0.96 | 2.45 | 2.926 (5) | 111 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.85 | 2.13 | 2.960 (5) | 167 |
| N2—H2⋯O1ii | 0.85 | 2.33 | 3.131 (5) | 158 |
Symmetry codes: (i) ; (ii) .