Literature DB >> 22199888

N,N'-Dicyclo-pentyl-N'',N''-dimethyl-phospho-ric triamide.

Akbar Raissi Shabari, Mehrdad Pourayoubi, Farnaz Ghoreishi, Banafsheh Vahdani.   

Abstract

The P atom in the title mol-ecule, C(12)H(26)N(3)OP, has a distorted tetra-hedral configuration: its bond angles lie in the range 101.1 (2)-119.1 (2)°. The P-N bonds to the two cyclo-pentyl-amido moieties are significantly different [1.619 (4) and 1.643 (4) Å], with the shorter bond related to an anti orientation of the lone electron pair of the corresponding N atom relative to the P=O bond. The O atom of the P=O group acts as a double hydrogen-bond acceptor and is involved in two different inter-molecular N-H⋯O(P) hydrogen bonds, building R(2) (2)(8) rings that are further linked into chains along [001].

Entities:  

Year:  2011        PMID: 22199888      PMCID: PMC3239040          DOI: 10.1107/S1600536811048549

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to phospho­ric triamide compounds, see: Pourayoubi & Tarahhomi et al. (2011 ▶). For applications of phospho­ric triamides as oxygen-donor ligands, see: Pourayoubi & Golen et al. (2011 ▶). For bond lengths and angles in compounds having a [(N)P(O)(N)2] skeleton, see: Sabbaghi et al. (2011 ▶). For double hydrogen-bond acceptors, see: Steiner (2002 ▶).

Experimental

Crystal data

C12H26N3OP M = 259.33 Orthorhombic, a = 10.962 (5) Å b = 16.663 (5) Å c = 8.079 (5) Å V = 1475.7 (12) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 291 K 0.35 × 0.11 × 0.05 mm

Data collection

Stoe IPDS 2T Image Plate diffractometer Absorption correction: multi-scan [MULABS (Blessing, 1995 ▶) and PLATON (Spek, 2009 ▶)] T min = 0.961, T max = 1.000 7303 measured reflections 2573 independent reflections 1482 reflections with I > 2σ(I) R int = 0.095

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.108 S = 0.88 2573 reflections 151 parameters 1 restraint H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.23 e Å−3 Absolute structure: Flack (1983 ▶), 1093 Friedel pairs Flack parameter: −0.20 (18) Data collection: X-AREA (Stoe & Cie, 2009 ▶); cell refinement: X-AREA; data reduction: X-AREA; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL, PLATON (Spek, 2009 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536811048549/ld2034sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536811048549/ld2034Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H26N3OPF(000) = 568
Mr = 259.33Dx = 1.167 Mg m3
Orthorhombic, Pca21Mo Kα radiation, λ = 0.71069 Å
Hall symbol: P 2c -2acCell parameters from 2536 reflections
a = 10.962 (5) Åθ = 2.0–27.5°
b = 16.663 (5) ŵ = 0.18 mm1
c = 8.079 (5) ÅT = 291 K
V = 1475.7 (12) Å3Needle, colourless
Z = 40.35 × 0.11 × 0.05 mm
Stoe IPDS 2T Image Plate diffractometer2573 independent reflections
Radiation source: fine-focus sealed tube1482 reflections with I > 2σ(I)
graphiteRint = 0.095
Detector resolution: 0.15 pixels mm-1θmax = 25.5°, θmin = 2.2°
ω scansh = −11→13
Absorption correction: multi-scan [MULABS (Blessing, 1995) and PLATON (Spek, 2009)]k = −20→20
Tmin = 0.961, Tmax = 1.000l = −8→9
7303 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.108w = 1/[σ2(Fo2) + (0.0401P)2] where P = (Fo2 + 2Fc2)/3
S = 0.88(Δ/σ)max < 0.001
2573 reflectionsΔρmax = 0.16 e Å3
151 parametersΔρmin = −0.23 e Å3
1 restraintAbsolute structure: Flack (1983), 1093 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.20 (18)
Experimental. IR (KBr, cm-1): 3290, 3151, 2955, 2866, 2835, 2794, 1459, 1291, 1197, 1159, 1107, 1090, 1030, 993, 932, 889, 762, 703, 555, 496, 464.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.83134 (10)1.79029 (6)0.70933 (17)0.0402 (3)
O10.6995 (2)1.78019 (14)0.7413 (4)0.0476 (9)
N10.8963 (4)1.73464 (16)0.5707 (5)0.0418 (10)
H10.87711.74220.47000.050*
N20.9056 (3)1.77094 (19)0.8814 (5)0.0452 (10)
H20.86161.78160.96510.054*
N30.8558 (4)1.8809 (2)0.6328 (4)0.0545 (12)
C10.9062 (4)1.6462 (2)0.5936 (6)0.0458 (12)
H1A0.92221.63520.71080.055*
C21.0064 (5)1.6094 (3)0.4926 (9)0.088 (2)
H2A1.08411.61470.54890.106*
H2B1.01211.63540.38540.106*
C30.9725 (6)1.5223 (3)0.4730 (10)0.100 (2)
H3A0.98841.50460.36060.121*
H3B1.02011.48940.54810.121*
C40.8410 (6)1.5149 (3)0.5115 (10)0.096 (2)
H4A0.82911.48210.60930.115*
H4B0.79791.49030.41970.115*
C50.7943 (5)1.5994 (2)0.5411 (7)0.0678 (17)
H5A0.75941.62160.44080.081*
H5B0.73281.59990.62750.081*
C61.0370 (4)1.7749 (2)0.9067 (6)0.0480 (12)
H6A1.07731.77470.79840.058*
C71.0855 (5)1.7061 (3)1.0069 (7)0.0700 (15)
H7A1.02081.68251.07290.084*
H7B1.11881.66500.93480.084*
C81.1810 (7)1.7386 (4)1.1141 (11)0.139 (2)
H8A1.17711.71361.22240.167*
H8B1.26071.72791.06690.167*
C91.1626 (7)1.8212 (4)1.1282 (9)0.139 (2)
H9A1.24011.84881.11660.167*
H9B1.13021.83341.23710.167*
C101.0791 (5)1.8495 (2)1.0034 (8)0.0702 (17)
H10A1.11951.88720.93010.084*
H10B1.00991.87611.05440.084*
C110.9700 (5)1.9066 (3)0.5626 (8)0.0808 (19)
H11A0.95521.94780.48200.121*
H11B1.00941.86190.51030.121*
H11C1.02151.92740.64870.121*
C120.7793 (6)1.9460 (2)0.6916 (10)0.093 (2)
H12A0.77681.98770.60980.139*
H12B0.81221.96690.79290.139*
H12C0.69821.92630.71090.139*
U11U22U33U12U13U23
P10.0424 (6)0.0398 (4)0.0385 (6)−0.0033 (5)−0.0014 (9)0.0013 (7)
O10.0381 (18)0.0585 (16)0.046 (3)−0.0026 (13)−0.0026 (18)0.0068 (16)
N10.054 (3)0.0364 (17)0.035 (2)−0.0031 (17)0.000 (2)0.0055 (17)
N20.039 (3)0.057 (2)0.039 (2)−0.0055 (19)0.006 (2)−0.0082 (19)
N30.060 (3)0.0419 (19)0.061 (3)−0.0004 (19)0.010 (2)0.0020 (16)
C10.058 (3)0.042 (2)0.037 (3)0.010 (2)−0.002 (3)0.001 (2)
C20.073 (4)0.060 (3)0.131 (6)0.006 (3)0.038 (5)0.004 (4)
C30.112 (6)0.067 (4)0.122 (6)0.022 (3)0.016 (6)−0.035 (4)
C40.098 (5)0.051 (3)0.140 (7)0.007 (3)−0.010 (6)−0.012 (3)
C50.057 (4)0.052 (3)0.095 (5)−0.002 (2)−0.006 (3)−0.002 (3)
C60.038 (3)0.050 (3)0.056 (3)0.000 (2)−0.004 (3)0.001 (2)
C70.068 (4)0.058 (3)0.085 (4)0.005 (3)−0.017 (4)0.007 (3)
C80.158 (6)0.107 (3)0.154 (5)0.012 (4)−0.095 (5)−0.004 (3)
C90.158 (6)0.107 (3)0.154 (5)0.012 (4)−0.095 (5)−0.004 (3)
C100.064 (4)0.047 (3)0.099 (5)−0.007 (2)−0.017 (4)−0.016 (3)
C110.086 (5)0.059 (3)0.097 (5)−0.016 (3)0.005 (4)0.025 (3)
C120.129 (5)0.052 (3)0.098 (6)0.015 (3)0.034 (6)−0.001 (4)
P1—O11.478 (3)C5—H5A0.9700
P1—N11.619 (4)C5—H5B0.9700
P1—N21.643 (4)C6—C71.500 (6)
P1—N31.653 (4)C6—C101.539 (6)
N1—C11.489 (4)C6—H6A0.9800
N1—H10.8499C7—C81.463 (8)
N2—C61.456 (5)C7—H7A0.9700
N2—H20.8489C7—H7B0.9700
N3—C111.440 (6)C8—C91.395 (8)
N3—C121.451 (6)C8—H8A0.9700
C1—C21.499 (7)C8—H8B0.9700
C1—C51.515 (6)C9—C101.441 (7)
C1—H1A0.9800C9—H9A0.9700
C2—C31.508 (6)C9—H9B0.9700
C2—H2A0.9700C10—H10A0.9700
C2—H2B0.9700C10—H10B0.9700
C3—C41.480 (8)C11—H11A0.9600
C3—H3A0.9700C11—H11B0.9600
C3—H3B0.9700C11—H11C0.9600
C4—C51.516 (6)C12—H12A0.9600
C4—H4A0.9700C12—H12B0.9600
C4—H4B0.9700C12—H12C0.9600
O1—P1—N1119.06 (19)H5A—C5—H5B108.9
O1—P1—N2108.3 (2)N2—C6—C7113.0 (4)
N1—P1—N2104.78 (19)N2—C6—C10113.9 (4)
O1—P1—N3109.13 (18)C7—C6—C10103.7 (4)
N1—P1—N3101.13 (19)N2—C6—H6A108.7
N2—P1—N3114.55 (18)C7—C6—H6A108.7
C1—N1—P1120.9 (3)C10—C6—H6A108.7
C1—N1—H1106.5C8—C7—C6106.9 (4)
P1—N1—H1117.9C8—C7—H7A110.3
C6—N2—P1126.8 (3)C6—C7—H7A110.3
C6—N2—H2116.2C8—C7—H7B110.3
P1—N2—H2110.6C6—C7—H7B110.3
C11—N3—C12114.1 (4)H7A—C7—H7B108.6
C11—N3—P1124.1 (3)C9—C8—C7108.1 (6)
C12—N3—P1117.8 (3)C9—C8—H8A110.1
N1—C1—C2113.0 (4)C7—C8—H8A110.1
N1—C1—C5114.6 (4)C9—C8—H8B110.1
C2—C1—C5103.3 (4)C7—C8—H8B110.1
N1—C1—H1A108.6H8A—C8—H8B108.4
C2—C1—H1A108.6C8—C9—C10110.9 (6)
C5—C1—H1A108.6C8—C9—H9A109.5
C1—C2—C3105.7 (4)C10—C9—H9A109.5
C1—C2—H2A110.6C8—C9—H9B109.5
C3—C2—H2A110.6C10—C9—H9B109.5
C1—C2—H2B110.6H9A—C9—H9B108.0
C3—C2—H2B110.6C9—C10—C6106.4 (4)
H2A—C2—H2B108.7C9—C10—H10A110.5
C4—C3—C2107.3 (4)C6—C10—H10A110.5
C4—C3—H3A110.3C9—C10—H10B110.5
C2—C3—H3A110.3C6—C10—H10B110.5
C4—C3—H3B110.3H10A—C10—H10B108.6
C2—C3—H3B110.3N3—C11—H11A109.5
H3A—C3—H3B108.5N3—C11—H11B109.5
C3—C4—C5106.6 (4)H11A—C11—H11B109.5
C3—C4—H4A110.4N3—C11—H11C109.5
C5—C4—H4A110.4H11A—C11—H11C109.5
C3—C4—H4B110.4H11B—C11—H11C109.5
C5—C4—H4B110.4N3—C12—H12A109.5
H4A—C4—H4B108.6N3—C12—H12B109.5
C1—C5—C4104.4 (4)H12A—C12—H12B109.5
C1—C5—H5A110.9N3—C12—H12C109.5
C4—C5—H5A110.9H12A—C12—H12C109.5
C1—C5—H5B110.9H12B—C12—H12C109.5
C4—C5—H5B110.9
O1—P1—N1—C1−65.4 (4)C5—C1—C2—C3−32.8 (6)
N2—P1—N1—C155.8 (4)C1—C2—C3—C417.9 (8)
N3—P1—N1—C1175.1 (3)C2—C3—C4—C54.3 (8)
O1—P1—N2—C6−178.9 (3)N1—C1—C5—C4158.6 (5)
N1—P1—N2—C653.0 (4)C2—C1—C5—C435.2 (6)
N3—P1—N2—C6−56.8 (4)C3—C4—C5—C1−24.6 (7)
O1—P1—N3—C11−169.5 (4)P1—N2—C6—C7−138.0 (4)
N1—P1—N3—C11−43.2 (4)P1—N2—C6—C10104.0 (5)
N2—P1—N3—C1168.9 (4)N2—C6—C7—C8−142.0 (5)
O1—P1—N3—C1234.3 (5)C10—C6—C7—C8−18.2 (6)
N1—P1—N3—C12160.6 (4)C6—C7—C8—C920.8 (8)
N2—P1—N3—C12−87.3 (4)C7—C8—C9—C10−14.8 (9)
P1—N1—C1—C2−158.0 (4)C8—C9—C10—C62.8 (8)
P1—N1—C1—C584.1 (5)N2—C6—C10—C9132.9 (5)
N1—C1—C2—C3−157.2 (5)C7—C6—C10—C99.7 (6)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.852.132.960 (5)167
N2—H2···O1ii0.852.333.131 (5)158
C11—H11B···N10.962.502.978 (6)110
C12—H12C···O10.962.452.926 (5)111
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.852.132.960 (5)167
N2—H2⋯O1ii0.852.333.131 (5)158

Symmetry codes: (i) ; (ii) .

  7 in total

1.  The hydrogen bond in the solid state.

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5.  The hydrogen-bonded dimers of N,N',N''-tricyclohexylphosphoric triamide in new tin(IV) and copper(II) complexes.

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6.  N,N'-Dicyclo-hexyl-N'',N''-dimethyl-phospho-ric triamide.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Fatemeh Karimi Ahmadabad; Zahra Azarkamanzad; Ali Asghar Ebrahimi Valmoozi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-26

7.  Structure validation in chemical crystallography.

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  7 in total

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