Literature DB >> 21523126

4-(5-Amino-1H-1,2,4-triazol-3-yl)pyridinium chloride monohydrate.

Victor M Chernyshev, Elena V Tarasova, Anna V Chernysheva, Victor B Rybakov.   

Abstract

In the cation of the title compound, C(7)H(8)N(5) (+)·Cl(-)·H(2)O, the mean planes of the <n class="Chemical">span class="Chemical">pyridine and <spn>an class="Chemical">1,2,4-triazole rings form a dihedral angle of 2.3 (1)°. The N atom of the amino group adopts a trigonal-pyramidal configuration. The N atom of the pyridine ring is protonated, forming a chloride salt. In the crystal, inter-molecular N-H⋯O, N-H⋯N, N-H⋯Cl and O-H⋯Cl hydrogen bonds link the cations, anions and water mol-ecules into layers parallel to the (1, 0, ) plane.

Entities:  

Year:  2011        PMID: 21523126      PMCID: PMC3051743          DOI: 10.1107/S1600536811002406

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of <span class="Chemical">3-pyridyl-substituted 5-amino-1,2,4-triazolesn> in the synthesis of biologically active compounds, see: Lipinski (1983 ▶); Ram (1988 ▶); Akahoshi et al. (1998 ▶); Young et al. (2001 ▶); Ouyang et al. (2005 ▶); <span class="Chemical">Dolzhenko et al. (2007 ▶). For <span class="Chemical">metal complexes of 3-pyridyl-substituted 5-amino-1,2,4-tri­azoles, see: Mishra et al. (1989 ▶); Ferrer et al. (2004 ▶); Castineiras & Garcia-Santos (2008 ▶). For a theoretical investigation of the protonation of C-amino-1,2,4-triazoles, see: Anders et al. (1997 ▶). For the crystal structures of protonated C-amino-1,2,4-triazoles, see: Lynch et al. (1999 ▶); Baouab et al. (2000 ▶); Bichay et al. (2006 ▶); Guerfel et al. (2007 ▶); Matulková et al. (2007 ▶). For the ionization constants (pK α) of 3-substituted 5-amino-1H-1,2,4-triazoles, see: Voronkov et al. (1976 ▶). For the 1H and 13C NMR spectra of 3-pyridyl-substituted 5-amino-1,2,4-triazoles, see: Dolzhenko et al. (2009a ▶). For typical NMR chemical shifts of 3-substituted 5-amino-1,2,4-triazoles and their salts, see: Chernyshev et al. (2010 ▶). For the crystal structures of 3-substituted 5-amino-1H-1,2,4-triazoles, see: Rusinov et al. (1991 ▶); Daro et al. (2000 ▶); Boechat et al. (2004 ▶); Dolzhenko et al. (2009b ▶,c ▶). For the crystal structures of 3(5)-pyridyl-substituted 1,2,4-triazoles protonated at the pyridine ring, see: Ren & Jian (2008 ▶); Xie et al. (2009 ▶); Du et al. (2009 ▶). For values of bond lengths in organic compounds, see: Allen et al. (1987 ▶). For the correlation of bond lengths with bond orders between sp 2-hybridized C and N atoms, see: Burke-Laing & Laing (1976 ▶).

Experimental

Crystal data

C7<span class="Species">H8n class="Chemical">N5 +·Cl−·<spn>an class="Chemical">H2O M = 215.65 Monoclinic, a = 5.3411 (5) Å b = 24.656 (3) Å c = 7.3488 (7) Å β = 97.62 (2)° V = 959.22 (18) Å3 Z = 4 Ag Kα radiation λ = 0.56085 Å μ = 0.20 mm−1 T = 295 K 0.20 × 0.20 × 0.20 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: refined from ΔF (Walker & Stuart, 1983 ▶) T min = 0.314, T max = 0.961 2389 measured reflections 2389 independent reflections 1518 reflections with I > 2σ(I) R int = 0.000 1 standard reflections every 60 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.109 S = 0.93 2389 reflections 151 parameters <span class="Disease">H atomsn> treated by a mixture of independent and constrained refinement Δρmax = 0.26 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811002406/aa2001sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811002406/aa2001Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8N5+·Cl·H2OF(000) = 448
Mr = 215.65Dx = 1.493 Mg m3
Monoclinic, P21/cMelting point = 579–581 K
Hall symbol: -P 2ybcAg Kα radiation, λ = 0.56085 Å
a = 5.3411 (5) ÅCell parameters from 25 reflections
b = 24.656 (3) Åθ = 12.1–14.0°
c = 7.3488 (7) ŵ = 0.20 mm1
β = 97.62 (2)°T = 295 K
V = 959.22 (18) Å3Prism, yellow
Z = 40.20 × 0.20 × 0.20 mm
Enraf–Nonius CAD-4 diffractometer1518 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.000
graphiteθmax = 22.0°, θmin = 1.3°
Non–profiled ω scansh = −7→7
Absorption correction: part of the refinement model (ΔF) (Walker & Stuart, 1983)k = 0→32
Tmin = 0.314, Tmax = 0.961l = 0→9
2389 measured reflections1 standard reflections every 60 min
2389 independent reflections intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.0642P)2] where P = (Fo2 + 2Fc2)/3
2389 reflections(Δ/σ)max = 0.001
151 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.03502 (9)0.29662 (2)0.52890 (9)0.0585 (2)
N10.4858 (3)−0.06015 (6)0.7559 (2)0.0421 (4)
H10.458 (3)−0.0952 (8)0.751 (3)0.038 (5)*
N20.3363 (3)−0.01915 (6)0.6821 (2)0.0438 (4)
C30.4713 (3)0.02346 (7)0.7339 (3)0.0380 (4)
N40.7008 (3)0.01345 (6)0.8344 (2)0.0401 (4)
C50.7035 (3)−0.03999 (7)0.8458 (3)0.0391 (4)
C130.3868 (3)0.07839 (7)0.6860 (3)0.0376 (4)
C140.1558 (3)0.08732 (8)0.5770 (3)0.0477 (5)
H140.05360.05830.53370.057*
C150.0833 (4)0.13903 (8)0.5355 (3)0.0512 (5)
H15−0.06940.14550.46200.061*
N160.2275 (3)0.18070 (7)0.5984 (3)0.0514 (5)
H160.197 (4)0.2140 (9)0.580 (3)0.053 (6)*
C170.4501 (4)0.17327 (8)0.7024 (3)0.0535 (6)
H170.54840.20310.74350.064*
C180.5325 (3)0.12272 (8)0.7479 (3)0.0468 (5)
H180.68690.11770.82070.056*
N510.8895 (3)−0.07055 (7)0.9294 (3)0.0514 (5)
H51A0.869 (4)−0.1036 (9)0.934 (3)0.048 (6)*
H51B0.994 (4)−0.0532 (9)0.998 (3)0.063 (7)*
O10.4229 (4)0.67460 (7)0.2570 (3)0.0635 (5)
H1A0.309 (6)0.6799 (12)0.333 (4)0.092 (11)*
H1B0.562 (6)0.6872 (11)0.319 (4)0.092 (10)*
U11U22U33U12U13U23
Cl10.0424 (3)0.0401 (3)0.0893 (5)0.0049 (2)−0.0051 (3)0.0026 (3)
N10.0292 (7)0.0325 (8)0.0603 (11)−0.0045 (6)−0.0100 (7)0.0005 (8)
N20.0291 (7)0.0428 (8)0.0560 (10)−0.0051 (6)−0.0078 (7)−0.0022 (8)
C30.0237 (8)0.0429 (10)0.0452 (11)−0.0004 (7)−0.0041 (7)−0.0041 (8)
N40.0289 (7)0.0330 (7)0.0545 (10)−0.0017 (6)−0.0082 (7)−0.0009 (7)
C50.0283 (8)0.0359 (8)0.0501 (11)−0.0031 (7)−0.0063 (7)−0.0005 (8)
C130.0273 (8)0.0392 (9)0.0450 (10)0.0019 (7)−0.0002 (7)−0.0004 (8)
C140.0320 (9)0.0486 (11)0.0584 (13)−0.0007 (8)−0.0092 (9)−0.0014 (9)
C150.0312 (9)0.0532 (12)0.0650 (14)0.0094 (8)−0.0090 (9)0.0057 (10)
N160.0413 (9)0.0419 (9)0.0686 (13)0.0117 (7)−0.0012 (8)0.0048 (9)
C170.0393 (10)0.0464 (11)0.0706 (16)0.0013 (9)−0.0078 (10)−0.0023 (10)
C180.0285 (9)0.0426 (10)0.0657 (13)0.0029 (8)−0.0076 (9)0.0008 (10)
N510.0361 (8)0.0326 (9)0.0784 (14)−0.0011 (7)−0.0187 (8)0.0002 (9)
O10.0426 (9)0.0564 (10)0.0867 (13)0.0052 (7)−0.0094 (10)−0.0090 (9)
N4—C51.320 (2)C15—N161.330 (3)
N4—C31.367 (2)C15—H150.9300
C5—N511.330 (2)N16—C171.338 (3)
C5—N11.353 (2)N16—H160.85 (2)
N1—N21.356 (2)C17—C181.349 (3)
N1—H10.876 (19)C17—H170.9300
N2—C31.302 (2)C18—H180.9300
C3—C131.456 (2)N51—H51A0.82 (2)
C13—C181.383 (2)N51—H51B0.82 (2)
C13—C141.396 (2)O1—H1A0.89 (3)
C14—C151.355 (3)O1—H1B0.88 (3)
C14—H140.9300
C5—N4—C3102.47 (14)N16—C15—C14120.89 (17)
N4—C5—N51126.56 (17)N16—C15—H15119.6
N4—C5—N1109.53 (15)C14—C15—H15119.6
N51—C5—N1123.90 (18)C15—N16—C17121.52 (18)
C5—N1—N2110.08 (15)C15—N16—H16127.1 (16)
C5—N1—H1120.6 (12)C17—N16—H16111.3 (16)
N2—N1—H1129.3 (12)N16—C17—C18120.25 (18)
C3—N2—N1102.18 (14)N16—C17—H17119.9
N2—C3—N4115.73 (16)C18—C17—H17119.9
N2—C3—C13122.53 (15)C17—C18—C13119.87 (17)
N4—C3—C13121.73 (15)C17—C18—H18120.1
C18—C13—C14118.66 (17)C13—C18—H18120.1
C18—C13—C3120.84 (15)C5—N51—H51A118.8 (15)
C14—C13—C3120.50 (16)C5—N51—H51B113.2 (17)
C15—C14—C13118.80 (17)H51A—N51—H51B125 (2)
C15—C14—H14120.6H1A—O1—H1B103 (3)
C13—C14—H14120.6
C3—N4—C5—N51179.2 (2)N2—C3—C13—C14−1.6 (3)
C3—N4—C5—N10.1 (2)N4—C3—C13—C14177.42 (19)
N4—C5—N1—N20.4 (2)C18—C13—C14—C150.2 (3)
N51—C5—N1—N2−178.75 (19)C3—C13—C14—C15179.92 (19)
C5—N1—N2—C3−0.8 (2)C13—C14—C15—N16−0.6 (3)
N1—N2—C3—N40.9 (2)C14—C15—N16—C170.9 (3)
N1—N2—C3—C13179.91 (17)C15—N16—C17—C18−0.7 (3)
C5—N4—C3—N2−0.6 (2)N16—C17—C18—C130.3 (3)
C5—N4—C3—C13−179.68 (18)C14—C13—C18—C170.0 (3)
N2—C3—C13—C18178.20 (19)C3—C13—C18—C17−179.8 (2)
N4—C3—C13—C18−2.8 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.876 (19)1.97 (2)2.842 (2)175.0 (18)
N16—H16···Cl10.85 (2)2.22 (2)3.0574 (18)169 (2)
N51—H51A···Cl1ii0.82 (2)2.52 (2)3.3092 (18)160.5 (19)
N51—H51B···N4iii0.82 (2)2.15 (2)2.963 (2)174 (2)
O1—H1A···Cl1iv0.89 (3)2.29 (3)3.159 (2)167 (3)
O1—H1B···Cl1v0.88 (3)2.32 (3)3.187 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.876 (19)1.97 (2)2.842 (2)175.0 (18)
N16—H16⋯Cl10.85 (2)2.22 (2)3.0574 (18)169 (2)
N51—H51A⋯Cl1ii0.82 (2)2.52 (2)3.3092 (18)160.5 (19)
N51—H51B⋯N4iii0.82 (2)2.15 (2)2.963 (2)174 (2)
O1—H1A⋯Cl1iv0.89 (3)2.29 (3)3.159 (2)167 (3)
O1—H1B⋯Cl1v0.88 (3)2.32 (3)3.187 (2)168 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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