| Literature DB >> 21201771 |
Xiao-Yan Ren1, Fang-Fang Jian.
Abstract
The crystal structure of the title compound, C(7)H(8)N(5)S(+)·Cl(-), is stabilized by inter-molecular N-H⋯Cl and N-H⋯S hydrogen-bond inter-actions.Entities:
Year: 2008 PMID: 21201771 PMCID: PMC2960705 DOI: 10.1107/S1600536808026123
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C7H8N5S+·Cl– | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
| θ = 4–14º | |
| µ = 0.56 mm−1 | |
| β = 104.70 (3)º | Bar, yellow |
| 0.20 × 0.15 × 0.11 mm | |
| Enraf–Nonius CAD-4 diffractometer | |
| Radiation source: fine-focus sealed tube | θmax = 27.0º |
| Monochromator: graphite | θmin = 2.6º |
| ω scans | |
| Absorption correction: none | |
| 2238 measured reflections | 3 standard reflections |
| 2091 independent reflections | every 100 reflections |
| 1712 reflections with | intensity decay: none |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| | |
| (Δ/σ)max < 0.001 | |
| 2091 reflections | Δρmax = 0.35 e Å−3 |
| 135 parameters | Δρmin = −0.29 e Å−3 |
| Primary atom site location: structure-invariant direct methods | Extinction correction: none |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl1 | 0.80625 (8) | 0.86963 (4) | 0.12228 (5) | 0.04585 (18) | |
| S1 | 0.75196 (9) | 0.94026 (5) | 0.52007 (7) | 0.0565 (2) | |
| N1 | 0.0222 (2) | 0.78167 (16) | −0.16338 (19) | 0.0469 (5) | |
| H1A | −0.0577 | 0.7735 | −0.2405 | 0.056* | |
| N2 | 0.4905 (2) | 0.89786 (14) | 0.28259 (18) | 0.0376 (4) | |
| N3 | 0.5917 (2) | 0.76955 (15) | 0.40203 (19) | 0.0452 (5) | |
| H3A | 0.6505 | 0.7315 | 0.4676 | 0.054* | |
| N4 | 0.4694 (3) | 0.73433 (15) | 0.28792 (19) | 0.0439 (4) | |
| N5 | 0.4688 (4) | 0.99550 (16) | 0.2289 (3) | 0.0540 (6) | |
| C1 | 0.0851 (3) | 0.7017 (2) | −0.0868 (2) | 0.0494 (6) | |
| H1B | 0.0430 | 0.6383 | −0.1173 | 0.059* | |
| C2 | 0.2114 (3) | 0.71260 (18) | 0.0365 (2) | 0.0459 (5) | |
| H2A | 0.2551 | 0.6568 | 0.0903 | 0.055* | |
| C3 | 0.2744 (3) | 0.80777 (17) | 0.0811 (2) | 0.0362 (5) | |
| C4 | 0.2062 (3) | 0.88900 (18) | −0.0017 (2) | 0.0441 (5) | |
| H4B | 0.2462 | 0.9533 | 0.0254 | 0.053* | |
| C5 | 0.0786 (3) | 0.87364 (19) | −0.1248 (2) | 0.0491 (6) | |
| H5C | 0.0318 | 0.9278 | −0.1810 | 0.059* | |
| C6 | 0.4102 (3) | 0.81438 (16) | 0.2152 (2) | 0.0367 (5) | |
| C7 | 0.6114 (3) | 0.86845 (18) | 0.4025 (2) | 0.0402 (5) | |
| H5A | 0.575 (5) | 1.011 (3) | 0.211 (4) | 0.092 (12)* | |
| H5B | 0.443 (4) | 1.032 (2) | 0.290 (3) | 0.065 (9)* |
| Cl1 | 0.0495 (3) | 0.0475 (3) | 0.0356 (3) | 0.0015 (2) | 0.0015 (2) | 0.0021 (2) |
| S1 | 0.0499 (4) | 0.0593 (4) | 0.0497 (4) | −0.0019 (3) | −0.0071 (3) | −0.0162 (3) |
| N1 | 0.0392 (10) | 0.0627 (13) | 0.0340 (10) | −0.0050 (9) | 0.0007 (7) | −0.0061 (9) |
| N2 | 0.0357 (9) | 0.0395 (9) | 0.0353 (9) | −0.0011 (7) | 0.0044 (7) | −0.0037 (7) |
| N3 | 0.0436 (10) | 0.0493 (11) | 0.0356 (9) | −0.0030 (9) | −0.0030 (8) | 0.0022 (8) |
| N4 | 0.0440 (10) | 0.0465 (11) | 0.0354 (9) | −0.0058 (8) | −0.0004 (8) | −0.0004 (8) |
| N5 | 0.0633 (15) | 0.0395 (12) | 0.0503 (13) | 0.0003 (10) | −0.0024 (11) | −0.0020 (10) |
| C1 | 0.0500 (13) | 0.0506 (14) | 0.0445 (12) | −0.0123 (11) | 0.0063 (10) | −0.0096 (11) |
| C2 | 0.0486 (12) | 0.0445 (13) | 0.0402 (12) | −0.0047 (10) | 0.0035 (9) | 0.0002 (10) |
| C3 | 0.0324 (10) | 0.0451 (12) | 0.0317 (10) | −0.0027 (9) | 0.0090 (8) | −0.0032 (9) |
| C4 | 0.0464 (12) | 0.0421 (12) | 0.0397 (11) | −0.0016 (10) | 0.0034 (9) | −0.0017 (9) |
| C5 | 0.0498 (13) | 0.0509 (14) | 0.0403 (12) | 0.0037 (11) | 0.0000 (10) | 0.0018 (10) |
| C6 | 0.0340 (10) | 0.0409 (11) | 0.0350 (10) | −0.0026 (8) | 0.0081 (8) | −0.0009 (8) |
| C7 | 0.0348 (10) | 0.0491 (13) | 0.0347 (11) | −0.0002 (9) | 0.0055 (8) | −0.0043 (9) |
| S1—C7 | 1.679 (2) | N5—H5A | 0.90 (4) |
| N1—C5 | 1.328 (3) | N5—H5B | 0.84 (3) |
| N1—C1 | 1.331 (3) | C1—C2 | 1.366 (3) |
| N1—H1A | 0.8600 | C1—H1B | 0.9300 |
| N2—C6 | 1.366 (3) | C2—C3 | 1.394 (3) |
| N2—C7 | 1.371 (3) | C2—H2A | 0.9300 |
| N2—N5 | 1.405 (3) | C3—C4 | 1.385 (3) |
| N3—C7 | 1.331 (3) | C3—C6 | 1.474 (3) |
| N3—N4 | 1.362 (3) | C4—C5 | 1.376 (3) |
| N3—H3A | 0.8600 | C4—H4B | 0.9300 |
| N4—C6 | 1.308 (3) | C5—H5C | 0.9300 |
| C5—N1—C1 | 122.28 (19) | C1—C2—H2A | 120.2 |
| C5—N1—H1A | 118.9 | C3—C2—H2A | 120.2 |
| C1—N1—H1A | 118.9 | C4—C3—C2 | 118.6 (2) |
| C6—N2—C7 | 108.35 (18) | C4—C3—C6 | 124.5 (2) |
| C6—N2—N5 | 125.26 (18) | C2—C3—C6 | 116.9 (2) |
| C7—N2—N5 | 125.94 (19) | C5—C4—C3 | 119.3 (2) |
| C7—N3—N4 | 113.60 (18) | C5—C4—H4B | 120.3 |
| C7—N3—H3A | 123.2 | C3—C4—H4B | 120.3 |
| N4—N3—H3A | 123.2 | N1—C5—C4 | 120.1 (2) |
| C6—N4—N3 | 104.37 (18) | N1—C5—H5C | 119.9 |
| N2—N5—H5A | 105 (2) | C4—C5—H5C | 119.9 |
| N2—N5—H5B | 107 (2) | N4—C6—N2 | 110.29 (18) |
| H5A—N5—H5B | 114 (3) | N4—C6—C3 | 121.29 (19) |
| N1—C1—C2 | 120.1 (2) | N2—C6—C3 | 128.43 (19) |
| N1—C1—H1B | 120.0 | N3—C7—N2 | 103.35 (18) |
| C2—C1—H1B | 120.0 | N3—C7—S1 | 128.55 (17) |
| C1—C2—C3 | 119.6 (2) | N2—C7—S1 | 128.10 (18) |
| H··· | ||||
| N1—H1A···Cl1i | 0.86 | 2.43 | 3.099 (2) | 135 |
| N3—H3A···Cl1ii | 0.86 | 2.17 | 3.027 (2) | 176 |
| N5—H5B···S1iii | 0.84 (3) | 2.72 (3) | 3.466 (3) | 148 (3) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.43 | 3.099 (2) | 135 |
| N3—H3 | 0.86 | 2.17 | 3.027 (2) | 176 |
| N5—H5 | 0.84 (3) | 2.72 (3) | 3.466 (3) | 148 (3) |
Symmetry codes: (i) ; (ii) ; (iii) .