Literature DB >> 21201771

4-(4-Amino-5-thioxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)pyridinium chloride.

Xiao-Yan Ren1, Fang-Fang Jian.   

Abstract

The crystal structure of the title compound, C(7)H(8)N(5)S(+)·Cl(-), is stabilized by inter-molecular N-H⋯Cl and N-H⋯S hydrogen-bond inter-actions.

Entities:  

Year:  2008        PMID: 21201771      PMCID: PMC2960705          DOI: 10.1107/S1600536808026123

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Jian et al. (2006 ▶); Shi et al. (1995 ▶); Xu et al. (2002 ▶).

Experimental

Crystal data

C7H8N5S+·Cl− M = 229.69 Monoclinic, a = 7.6740 (15) Å b = 13.374 (3) Å c = 9.965 (2) Å β = 104.70 (3)° V = 989.3 (4) Å3 Z = 4 Mo Kα radiation μ = 0.56 mm−1 T = 293 (2) K 0.20 × 0.15 × 0.11 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: none 2238 measured reflections 2091 independent reflections 1712 reflections with I > 2σ(I) R int = 0.050 3 standard reflections every 100 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.111 S = 0.96 2091 reflections 135 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.29 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536808026123/at2609sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808026123/at2609Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H8N5S+·ClF000 = 472
Mr = 229.69Dx = 1.542 Mg m3
Monoclinic, P21/cMo Kα radiation λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.6740 (15) Åθ = 4–14º
b = 13.374 (3) ŵ = 0.56 mm1
c = 9.965 (2) ÅT = 293 (2) K
β = 104.70 (3)ºBar, yellow
V = 989.3 (4) Å30.20 × 0.15 × 0.11 mm
Z = 4
Enraf–Nonius CAD-4 diffractometerRint = 0.050
Radiation source: fine-focus sealed tubeθmax = 27.0º
Monochromator: graphiteθmin = 2.6º
T = 293(2) Kh = 0→9
ω scansk = 0→15
Absorption correction: nonel = −11→11
2238 measured reflections3 standard reflections
2091 independent reflections every 100 reflections
1712 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.038H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0626P)2 + 0.6426P] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max < 0.001
2091 reflectionsΔρmax = 0.35 e Å3
135 parametersΔρmin = −0.29 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.80625 (8)0.86963 (4)0.12228 (5)0.04585 (18)
S10.75196 (9)0.94026 (5)0.52007 (7)0.0565 (2)
N10.0222 (2)0.78167 (16)−0.16338 (19)0.0469 (5)
H1A−0.05770.7735−0.24050.056*
N20.4905 (2)0.89786 (14)0.28259 (18)0.0376 (4)
N30.5917 (2)0.76955 (15)0.40203 (19)0.0452 (5)
H3A0.65050.73150.46760.054*
N40.4694 (3)0.73433 (15)0.28792 (19)0.0439 (4)
N50.4688 (4)0.99550 (16)0.2289 (3)0.0540 (6)
C10.0851 (3)0.7017 (2)−0.0868 (2)0.0494 (6)
H1B0.04300.6383−0.11730.059*
C20.2114 (3)0.71260 (18)0.0365 (2)0.0459 (5)
H2A0.25510.65680.09030.055*
C30.2744 (3)0.80777 (17)0.0811 (2)0.0362 (5)
C40.2062 (3)0.88900 (18)−0.0017 (2)0.0441 (5)
H4B0.24620.95330.02540.053*
C50.0786 (3)0.87364 (19)−0.1248 (2)0.0491 (6)
H5C0.03180.9278−0.18100.059*
C60.4102 (3)0.81438 (16)0.2152 (2)0.0367 (5)
C70.6114 (3)0.86845 (18)0.4025 (2)0.0402 (5)
H5A0.575 (5)1.011 (3)0.211 (4)0.092 (12)*
H5B0.443 (4)1.032 (2)0.290 (3)0.065 (9)*
U11U22U33U12U13U23
Cl10.0495 (3)0.0475 (3)0.0356 (3)0.0015 (2)0.0015 (2)0.0021 (2)
S10.0499 (4)0.0593 (4)0.0497 (4)−0.0019 (3)−0.0071 (3)−0.0162 (3)
N10.0392 (10)0.0627 (13)0.0340 (10)−0.0050 (9)0.0007 (7)−0.0061 (9)
N20.0357 (9)0.0395 (9)0.0353 (9)−0.0011 (7)0.0044 (7)−0.0037 (7)
N30.0436 (10)0.0493 (11)0.0356 (9)−0.0030 (9)−0.0030 (8)0.0022 (8)
N40.0440 (10)0.0465 (11)0.0354 (9)−0.0058 (8)−0.0004 (8)−0.0004 (8)
N50.0633 (15)0.0395 (12)0.0503 (13)0.0003 (10)−0.0024 (11)−0.0020 (10)
C10.0500 (13)0.0506 (14)0.0445 (12)−0.0123 (11)0.0063 (10)−0.0096 (11)
C20.0486 (12)0.0445 (13)0.0402 (12)−0.0047 (10)0.0035 (9)0.0002 (10)
C30.0324 (10)0.0451 (12)0.0317 (10)−0.0027 (9)0.0090 (8)−0.0032 (9)
C40.0464 (12)0.0421 (12)0.0397 (11)−0.0016 (10)0.0034 (9)−0.0017 (9)
C50.0498 (13)0.0509 (14)0.0403 (12)0.0037 (11)0.0000 (10)0.0018 (10)
C60.0340 (10)0.0409 (11)0.0350 (10)−0.0026 (8)0.0081 (8)−0.0009 (8)
C70.0348 (10)0.0491 (13)0.0347 (11)−0.0002 (9)0.0055 (8)−0.0043 (9)
S1—C71.679 (2)N5—H5A0.90 (4)
N1—C51.328 (3)N5—H5B0.84 (3)
N1—C11.331 (3)C1—C21.366 (3)
N1—H1A0.8600C1—H1B0.9300
N2—C61.366 (3)C2—C31.394 (3)
N2—C71.371 (3)C2—H2A0.9300
N2—N51.405 (3)C3—C41.385 (3)
N3—C71.331 (3)C3—C61.474 (3)
N3—N41.362 (3)C4—C51.376 (3)
N3—H3A0.8600C4—H4B0.9300
N4—C61.308 (3)C5—H5C0.9300
C5—N1—C1122.28 (19)C1—C2—H2A120.2
C5—N1—H1A118.9C3—C2—H2A120.2
C1—N1—H1A118.9C4—C3—C2118.6 (2)
C6—N2—C7108.35 (18)C4—C3—C6124.5 (2)
C6—N2—N5125.26 (18)C2—C3—C6116.9 (2)
C7—N2—N5125.94 (19)C5—C4—C3119.3 (2)
C7—N3—N4113.60 (18)C5—C4—H4B120.3
C7—N3—H3A123.2C3—C4—H4B120.3
N4—N3—H3A123.2N1—C5—C4120.1 (2)
C6—N4—N3104.37 (18)N1—C5—H5C119.9
N2—N5—H5A105 (2)C4—C5—H5C119.9
N2—N5—H5B107 (2)N4—C6—N2110.29 (18)
H5A—N5—H5B114 (3)N4—C6—C3121.29 (19)
N1—C1—C2120.1 (2)N2—C6—C3128.43 (19)
N1—C1—H1B120.0N3—C7—N2103.35 (18)
C2—C1—H1B120.0N3—C7—S1128.55 (17)
C1—C2—C3119.6 (2)N2—C7—S1128.10 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···Cl1i0.862.433.099 (2)135
N3—H3A···Cl1ii0.862.173.027 (2)176
N5—H5B···S1iii0.84 (3)2.72 (3)3.466 (3)148 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯Cl1i0.862.433.099 (2)135
N3—H3A⋯Cl1ii0.862.173.027 (2)176
N5—H5B⋯S1iii0.84 (3)2.72 (3)3.466 (3)148 (3)

Symmetry codes: (i) ; (ii) ; (iii) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  1 in total

1.  4-(5-Amino-1H-1,2,4-triazol-3-yl)pyridinium chloride monohydrate.

Authors:  Victor M Chernyshev; Elena V Tarasova; Anna V Chernysheva; Victor B Rybakov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22
  1 in total

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