Literature DB >> 23125726

1-(5-Amino-2,4-dinitro-phen-yl)pyridinium chloride monohydrate.

Rajamanickam Babykala1, Doraisamyraja Kalaivani.   

Abstract

In the cation of the title hydrated salt, C(11)H(9)N(4)O(4) (+)·Cl(-)·H(2)O, the six-membered rings are inclined to each other at 79.0 (1)° and an intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, N-H⋯Cl hydrogen bonds link two cations and two anions into centrosymmetric group, and O-H⋯Cl hydrogen bonds involving the water mol-ecules further link these groups into chains in [101]. An O-H⋯O inter-action is also present. The water mol-ecule is disordered over two sets of sites in a 0.555 (13):0.445 (13) ratio.

Entities:  

Year:  2012        PMID: 23125726      PMCID: PMC3470313          DOI: 10.1107/S1600536812038834

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of N-substituted pyridinium salts, see: Sliwa (1996 ▶); Ali et al. (2005 ▶); Chelossi et al. (2006 ▶); Azzouz et al. (2008 ▶). For related structures, see: Shmidt et al. (2005 ▶); Wojtas et al. (2006 ▶); Manickkam & Kalaivani (2011 ▶); Chernyshev et al. (2011 ▶); Sridevi & Kalaivani (2012 ▶).

Experimental

Crystal data

C11H9N4O4 +·Cl−·H2O M = 314.69 Monoclinic, a = 5.4312 (4) Å b = 21.493 (2) Å c = 11.3892 (9) Å β = 92.362 (3)° V = 1328.33 (19) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2004 ▶) T min = 0.871, T max = 0.939 14754 measured reflections 3125 independent reflections 2288 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.038 wR(F 2) = 0.112 S = 1.03 3125 reflections 224 parameters 9 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812038834/cv5319sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812038834/cv5319Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536812038834/cv5319Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H9N4O4+·Cl·H2OF(000) = 648
Mr = 314.69Dx = 1.574 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4581 reflections
a = 5.4312 (4) Åθ = 2.6–25.4°
b = 21.493 (2) ŵ = 0.32 mm1
c = 11.3892 (9) ÅT = 293 K
β = 92.362 (3)°Block, red
V = 1328.33 (19) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3125 independent reflections
Radiation source: fine-focus sealed tube2288 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
ω and φ scanθmax = 27.9°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Bruker, 2004)h = −7→6
Tmin = 0.871, Tmax = 0.939k = −28→28
14754 measured reflectionsl = −11→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0538P)2 + 0.2604P] where P = (Fo2 + 2Fc2)/3
3125 reflections(Δ/σ)max = 0.001
224 parametersΔρmax = 0.20 e Å3
9 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.3483 (3)0.66419 (8)0.10183 (14)0.0449 (4)
H10.47800.68780.13360.054*
C20.3105 (3)0.66065 (9)−0.01760 (15)0.0531 (4)
H20.41490.6814−0.06710.064*
C30.1174 (4)0.62626 (9)−0.06342 (15)0.0563 (5)
H30.08710.6242−0.14430.068*
C4−0.0302 (4)0.59508 (11)0.01082 (17)0.0663 (6)
H4−0.16070.5712−0.01940.080*
C50.0137 (3)0.59893 (10)0.12967 (16)0.0613 (5)
H5−0.08550.57730.18030.074*
C60.2469 (3)0.63860 (8)0.29921 (13)0.0403 (4)
C70.1136 (3)0.67842 (8)0.37070 (14)0.0414 (4)
C80.1804 (3)0.68200 (8)0.48832 (14)0.0441 (4)
H80.09150.70760.53700.053*
C90.3760 (3)0.64842 (8)0.53520 (13)0.0432 (4)
C100.5080 (3)0.60594 (8)0.46686 (13)0.0439 (4)
C110.4326 (3)0.60318 (8)0.34576 (14)0.0446 (4)
H110.51380.57610.29690.054*
N2−0.0913 (3)0.71602 (7)0.32853 (13)0.0493 (4)
N10.1997 (2)0.63388 (6)0.17294 (11)0.0404 (3)
N30.4403 (3)0.65911 (7)0.65862 (12)0.0517 (4)
O1−0.1404 (2)0.71820 (7)0.22235 (12)0.0628 (4)
O2−0.2092 (3)0.74376 (8)0.40064 (13)0.0787 (5)
O30.3182 (3)0.69609 (7)0.71230 (11)0.0676 (4)
O40.6154 (3)0.63139 (8)0.70329 (11)0.0740 (4)
N40.6928 (3)0.57003 (8)0.50422 (14)0.0560 (4)
O50.3996 (12)0.4960 (2)0.1460 (6)0.0653 (17)0.555 (13)
O5'0.4978 (12)0.5075 (2)0.0942 (7)0.0622 (16)0.445 (13)
Cl10.88637 (9)0.47657 (2)0.30769 (4)0.06455 (18)
H5A0.274 (7)0.487 (3)0.196 (5)0.15 (2)*0.555 (13)
H5B0.556 (4)0.494 (4)0.174 (5)0.15 (2)*0.555 (13)
H5C0.520 (14)0.481 (3)0.156 (4)0.08 (3)*0.445 (13)
H5D0.554 (9)0.499 (3)0.022 (2)0.064 (16)*0.445 (13)
H4A0.747 (3)0.5711 (10)0.5766 (14)0.063 (6)*
H4B0.759 (4)0.5437 (9)0.4563 (18)0.071 (7)*
U11U22U33U12U13U23
C10.0445 (9)0.0485 (9)0.0413 (8)−0.0051 (7)−0.0018 (7)0.0032 (7)
C20.0619 (11)0.0584 (11)0.0389 (9)−0.0033 (8)0.0029 (8)0.0053 (8)
C30.0658 (12)0.0667 (12)0.0356 (8)0.0059 (9)−0.0056 (8)0.0004 (8)
C40.0556 (11)0.0906 (15)0.0512 (11)−0.0181 (10)−0.0147 (9)−0.0037 (10)
C50.0503 (10)0.0871 (15)0.0460 (9)−0.0243 (10)−0.0043 (8)0.0058 (9)
C60.0384 (8)0.0504 (9)0.0318 (7)−0.0074 (7)−0.0034 (6)0.0046 (6)
C70.0376 (8)0.0440 (9)0.0423 (8)−0.0045 (6)−0.0038 (6)0.0045 (7)
C80.0464 (9)0.0448 (9)0.0412 (8)−0.0039 (7)0.0016 (7)0.0002 (7)
C90.0481 (9)0.0496 (9)0.0315 (7)−0.0067 (7)−0.0022 (6)0.0051 (7)
C100.0417 (8)0.0514 (9)0.0380 (8)−0.0035 (7)−0.0038 (7)0.0073 (7)
C110.0418 (8)0.0567 (10)0.0353 (8)0.0023 (7)−0.0001 (6)0.0029 (7)
N20.0442 (8)0.0472 (8)0.0556 (9)−0.0020 (6)−0.0096 (7)0.0005 (7)
N10.0377 (6)0.0501 (8)0.0328 (6)−0.0028 (6)−0.0047 (5)0.0041 (5)
N30.0631 (9)0.0549 (9)0.0365 (7)−0.0051 (7)−0.0052 (7)0.0035 (7)
O10.0581 (8)0.0727 (9)0.0557 (8)0.0073 (6)−0.0222 (6)−0.0006 (7)
O20.0757 (10)0.0902 (11)0.0696 (9)0.0342 (8)−0.0052 (8)−0.0106 (8)
O30.0897 (10)0.0747 (9)0.0384 (7)0.0102 (8)0.0017 (7)−0.0052 (6)
O40.0846 (10)0.0864 (11)0.0486 (8)0.0167 (8)−0.0252 (7)−0.0053 (7)
N40.0577 (9)0.0683 (11)0.0409 (8)0.0125 (8)−0.0111 (7)0.0022 (8)
O50.066 (3)0.075 (2)0.054 (3)0.0075 (19)−0.014 (2)−0.0065 (17)
O5'0.057 (3)0.079 (2)0.050 (3)0.0092 (19)0.001 (2)0.002 (2)
Cl10.0775 (3)0.0563 (3)0.0576 (3)0.0081 (2)−0.0250 (2)0.0010 (2)
C1—N11.336 (2)C8—H80.9300
C1—C21.369 (2)C9—C101.414 (2)
C1—H10.9300C9—N31.4528 (19)
C2—C31.369 (3)C10—N41.323 (2)
C2—H20.9300C10—C111.424 (2)
C3—C41.365 (3)C11—H110.9300
C3—H30.9300N2—O21.2176 (19)
C4—C51.367 (3)N2—O11.2285 (18)
C4—H40.9300N3—O41.2158 (19)
C5—N11.336 (2)N3—O31.216 (2)
C5—H50.9300N4—H4A0.864 (15)
C6—C111.354 (2)N4—H4B0.874 (16)
C6—C71.403 (2)O5—H5A0.930 (19)
C6—N11.4540 (19)O5—H5B0.90 (2)
C7—C81.375 (2)O5'—H5C0.916 (19)
C7—N21.442 (2)O5'—H5D0.913 (19)
C8—C91.374 (2)
N1—C1—C2120.36 (15)C8—C9—C10121.78 (14)
N1—C1—H1119.8C8—C9—N3116.37 (15)
C2—C1—H1119.8C10—C9—N3121.85 (14)
C3—C2—C1119.33 (16)N4—C10—C9126.50 (15)
C3—C2—H2120.3N4—C10—C11118.14 (16)
C1—C2—H2120.3C9—C10—C11115.35 (14)
C4—C3—C2119.29 (16)C6—C11—C10122.40 (16)
C4—C3—H3120.4C6—C11—H11118.8
C2—C3—H3120.4C10—C11—H11118.8
C3—C4—C5120.05 (18)O2—N2—O1123.14 (15)
C3—C4—H4120.0O2—N2—C7118.02 (14)
C5—C4—H4120.0O1—N2—C7118.83 (15)
N1—C5—C4119.83 (17)C1—N1—C5121.11 (14)
N1—C5—H5120.1C1—N1—C6118.62 (13)
C4—C5—H5120.1C5—N1—C6120.26 (13)
C11—C6—C7120.64 (14)O4—N3—O3122.92 (14)
C11—C6—N1116.52 (14)O4—N3—C9118.69 (15)
C7—C6—N1122.83 (14)O3—N3—C9118.39 (15)
C8—C7—C6118.53 (14)C10—N4—H4A121.1 (14)
C8—C7—N2117.52 (15)C10—N4—H4B120.2 (15)
C6—C7—N2123.95 (14)H4A—N4—H4B119 (2)
C9—C8—C7121.18 (15)H5A—O5—H5B119 (3)
C9—C8—H8119.4H5A—O5—H5C119 (5)
C7—C8—H8119.4H5C—O5'—H5D122 (4)
N1—C1—C2—C30.7 (3)N4—C10—C11—C6−179.34 (16)
C1—C2—C3—C4−1.4 (3)C9—C10—C11—C6−0.2 (2)
C2—C3—C4—C50.7 (3)C8—C7—N2—O2−7.3 (2)
C3—C4—C5—N10.8 (3)C6—C7—N2—O2172.42 (16)
C11—C6—C7—C81.9 (2)C8—C7—N2—O1173.29 (15)
N1—C6—C7—C8−176.69 (14)C6—C7—N2—O1−6.9 (2)
C11—C6—C7—N2−177.90 (15)C2—C1—N1—C50.9 (3)
N1—C6—C7—N23.5 (2)C2—C1—N1—C6179.68 (16)
C6—C7—C8—C91.2 (2)C4—C5—N1—C1−1.6 (3)
N2—C7—C8—C9−178.98 (14)C4—C5—N1—C6179.61 (18)
C7—C8—C9—C10−3.9 (2)C11—C6—N1—C1−78.17 (19)
C7—C8—C9—N3175.86 (15)C7—C6—N1—C1100.44 (18)
C8—C9—C10—N4−177.62 (17)C11—C6—N1—C5100.64 (19)
N3—C9—C10—N42.6 (3)C7—C6—N1—C5−80.8 (2)
C8—C9—C10—C113.3 (2)C8—C9—N3—O4−178.50 (16)
N3—C9—C10—C11−176.45 (14)C10—C9—N3—O41.3 (2)
C7—C6—C11—C10−2.4 (2)C8—C9—N3—O30.6 (2)
N1—C6—C11—C10176.28 (14)C10—C9—N3—O3−179.63 (15)
D—H···AD—HH···AD···AD—H···A
N4—H4A···O40.86 (2)2.09 (2)2.671 (2)124 (2)
N4—H4B···Cl10.87 (2)2.35 (2)3.2162 (19)171 (2)
N4—H4A···Cl1i0.86 (2)2.56 (2)3.2268 (16)135 (2)
O5—H5B···Cl10.90 (2)2.34 (3)3.187 (3)158 (5)
O5—H5A···Cl1ii0.93 (2)2.51 (2)3.429 (9)169 (5)
O5′—H5D···O5iii0.91 (2)1.94 (3)2.815 (16)160 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4A⋯O40.86 (2)2.09 (2)2.671 (2)124 (2)
N4—H4B⋯Cl10.87 (2)2.35 (2)3.2162 (19)171 (2)
N4—H4A⋯Cl1i 0.86 (2)2.56 (2)3.2268 (16)135 (2)
O5—H5B⋯Cl10.90 (2)2.34 (3)3.187 (3)158 (5)
O5—H5A⋯Cl1ii 0.93 (2)2.51 (2)3.429 (9)169 (5)
O5′—H5D⋯O5iii 0.91 (2)1.94 (3)2.815 (16)160 (5)

Symmetry codes: (i) ; (ii) ; (iii) .

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