| Literature DB >> 23125726 |
Rajamanickam Babykala1, Doraisamyraja Kalaivani.
Abstract
In the cation of the title hydrated salt, C(11)H(9)N(4)O(4) (+)·Cl(-)·H(2)O, the six-membered rings are inclined to each other at 79.0 (1)° and an intra-molecular N-H⋯O hydrogen bond occurs. In the crystal, N-H⋯Cl hydrogen bonds link two cations and two anions into centrosymmetric group, and O-H⋯Cl hydrogen bonds involving the water mol-ecules further link these groups into chains in [101]. An O-H⋯O inter-action is also present. The water mol-ecule is disordered over two sets of sites in a 0.555 (13):0.445 (13) ratio.Entities:
Year: 2012 PMID: 23125726 PMCID: PMC3470313 DOI: 10.1107/S1600536812038834
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H9N4O4+·Cl−·H2O | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 4581 reflections |
| θ = 2.6–25.4° | |
| µ = 0.32 mm−1 | |
| β = 92.362 (3)° | Block, red |
| 0.30 × 0.25 × 0.20 mm | |
| Bruker Kappa APEXII CCD diffractometer | 3125 independent reflections |
| Radiation source: fine-focus sealed tube | 2288 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 27.9°, θmin = 2.6° |
| Absorption correction: multi-scan ( | |
| 14754 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3125 reflections | (Δ/σ)max = 0.001 |
| 224 parameters | Δρmax = 0.20 e Å−3 |
| 9 restraints | Δρmin = −0.27 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.3483 (3) | 0.66419 (8) | 0.10183 (14) | 0.0449 (4) | |
| H1 | 0.4780 | 0.6878 | 0.1336 | 0.054* | |
| C2 | 0.3105 (3) | 0.66065 (9) | −0.01760 (15) | 0.0531 (4) | |
| H2 | 0.4149 | 0.6814 | −0.0671 | 0.064* | |
| C3 | 0.1174 (4) | 0.62626 (9) | −0.06342 (15) | 0.0563 (5) | |
| H3 | 0.0871 | 0.6242 | −0.1443 | 0.068* | |
| C4 | −0.0302 (4) | 0.59508 (11) | 0.01082 (17) | 0.0663 (6) | |
| H4 | −0.1607 | 0.5712 | −0.0194 | 0.080* | |
| C5 | 0.0137 (3) | 0.59893 (10) | 0.12967 (16) | 0.0613 (5) | |
| H5 | −0.0855 | 0.5773 | 0.1803 | 0.074* | |
| C6 | 0.2469 (3) | 0.63860 (8) | 0.29921 (13) | 0.0403 (4) | |
| C7 | 0.1136 (3) | 0.67842 (8) | 0.37070 (14) | 0.0414 (4) | |
| C8 | 0.1804 (3) | 0.68200 (8) | 0.48832 (14) | 0.0441 (4) | |
| H8 | 0.0915 | 0.7076 | 0.5370 | 0.053* | |
| C9 | 0.3760 (3) | 0.64842 (8) | 0.53520 (13) | 0.0432 (4) | |
| C10 | 0.5080 (3) | 0.60594 (8) | 0.46686 (13) | 0.0439 (4) | |
| C11 | 0.4326 (3) | 0.60318 (8) | 0.34576 (14) | 0.0446 (4) | |
| H11 | 0.5138 | 0.5761 | 0.2969 | 0.054* | |
| N2 | −0.0913 (3) | 0.71602 (7) | 0.32853 (13) | 0.0493 (4) | |
| N1 | 0.1997 (2) | 0.63388 (6) | 0.17294 (11) | 0.0404 (3) | |
| N3 | 0.4403 (3) | 0.65911 (7) | 0.65862 (12) | 0.0517 (4) | |
| O1 | −0.1404 (2) | 0.71820 (7) | 0.22235 (12) | 0.0628 (4) | |
| O2 | −0.2092 (3) | 0.74376 (8) | 0.40064 (13) | 0.0787 (5) | |
| O3 | 0.3182 (3) | 0.69609 (7) | 0.71230 (11) | 0.0676 (4) | |
| O4 | 0.6154 (3) | 0.63139 (8) | 0.70329 (11) | 0.0740 (4) | |
| N4 | 0.6928 (3) | 0.57003 (8) | 0.50422 (14) | 0.0560 (4) | |
| O5 | 0.3996 (12) | 0.4960 (2) | 0.1460 (6) | 0.0653 (17) | 0.555 (13) |
| O5' | 0.4978 (12) | 0.5075 (2) | 0.0942 (7) | 0.0622 (16) | 0.445 (13) |
| Cl1 | 0.88637 (9) | 0.47657 (2) | 0.30769 (4) | 0.06455 (18) | |
| H5A | 0.274 (7) | 0.487 (3) | 0.196 (5) | 0.15 (2)* | 0.555 (13) |
| H5B | 0.556 (4) | 0.494 (4) | 0.174 (5) | 0.15 (2)* | 0.555 (13) |
| H5C | 0.520 (14) | 0.481 (3) | 0.156 (4) | 0.08 (3)* | 0.445 (13) |
| H5D | 0.554 (9) | 0.499 (3) | 0.022 (2) | 0.064 (16)* | 0.445 (13) |
| H4A | 0.747 (3) | 0.5711 (10) | 0.5766 (14) | 0.063 (6)* | |
| H4B | 0.759 (4) | 0.5437 (9) | 0.4563 (18) | 0.071 (7)* |
| C1 | 0.0445 (9) | 0.0485 (9) | 0.0413 (8) | −0.0051 (7) | −0.0018 (7) | 0.0032 (7) |
| C2 | 0.0619 (11) | 0.0584 (11) | 0.0389 (9) | −0.0033 (8) | 0.0029 (8) | 0.0053 (8) |
| C3 | 0.0658 (12) | 0.0667 (12) | 0.0356 (8) | 0.0059 (9) | −0.0056 (8) | 0.0004 (8) |
| C4 | 0.0556 (11) | 0.0906 (15) | 0.0512 (11) | −0.0181 (10) | −0.0147 (9) | −0.0037 (10) |
| C5 | 0.0503 (10) | 0.0871 (15) | 0.0460 (9) | −0.0243 (10) | −0.0043 (8) | 0.0058 (9) |
| C6 | 0.0384 (8) | 0.0504 (9) | 0.0318 (7) | −0.0074 (7) | −0.0034 (6) | 0.0046 (6) |
| C7 | 0.0376 (8) | 0.0440 (9) | 0.0423 (8) | −0.0045 (6) | −0.0038 (6) | 0.0045 (7) |
| C8 | 0.0464 (9) | 0.0448 (9) | 0.0412 (8) | −0.0039 (7) | 0.0016 (7) | 0.0002 (7) |
| C9 | 0.0481 (9) | 0.0496 (9) | 0.0315 (7) | −0.0067 (7) | −0.0022 (6) | 0.0051 (7) |
| C10 | 0.0417 (8) | 0.0514 (9) | 0.0380 (8) | −0.0035 (7) | −0.0038 (7) | 0.0073 (7) |
| C11 | 0.0418 (8) | 0.0567 (10) | 0.0353 (8) | 0.0023 (7) | −0.0001 (6) | 0.0029 (7) |
| N2 | 0.0442 (8) | 0.0472 (8) | 0.0556 (9) | −0.0020 (6) | −0.0096 (7) | 0.0005 (7) |
| N1 | 0.0377 (6) | 0.0501 (8) | 0.0328 (6) | −0.0028 (6) | −0.0047 (5) | 0.0041 (5) |
| N3 | 0.0631 (9) | 0.0549 (9) | 0.0365 (7) | −0.0051 (7) | −0.0052 (7) | 0.0035 (7) |
| O1 | 0.0581 (8) | 0.0727 (9) | 0.0557 (8) | 0.0073 (6) | −0.0222 (6) | −0.0006 (7) |
| O2 | 0.0757 (10) | 0.0902 (11) | 0.0696 (9) | 0.0342 (8) | −0.0052 (8) | −0.0106 (8) |
| O3 | 0.0897 (10) | 0.0747 (9) | 0.0384 (7) | 0.0102 (8) | 0.0017 (7) | −0.0052 (6) |
| O4 | 0.0846 (10) | 0.0864 (11) | 0.0486 (8) | 0.0167 (8) | −0.0252 (7) | −0.0053 (7) |
| N4 | 0.0577 (9) | 0.0683 (11) | 0.0409 (8) | 0.0125 (8) | −0.0111 (7) | 0.0022 (8) |
| O5 | 0.066 (3) | 0.075 (2) | 0.054 (3) | 0.0075 (19) | −0.014 (2) | −0.0065 (17) |
| O5' | 0.057 (3) | 0.079 (2) | 0.050 (3) | 0.0092 (19) | 0.001 (2) | 0.002 (2) |
| Cl1 | 0.0775 (3) | 0.0563 (3) | 0.0576 (3) | 0.0081 (2) | −0.0250 (2) | 0.0010 (2) |
| C1—N1 | 1.336 (2) | C8—H8 | 0.9300 |
| C1—C2 | 1.369 (2) | C9—C10 | 1.414 (2) |
| C1—H1 | 0.9300 | C9—N3 | 1.4528 (19) |
| C2—C3 | 1.369 (3) | C10—N4 | 1.323 (2) |
| C2—H2 | 0.9300 | C10—C11 | 1.424 (2) |
| C3—C4 | 1.365 (3) | C11—H11 | 0.9300 |
| C3—H3 | 0.9300 | N2—O2 | 1.2176 (19) |
| C4—C5 | 1.367 (3) | N2—O1 | 1.2285 (18) |
| C4—H4 | 0.9300 | N3—O4 | 1.2158 (19) |
| C5—N1 | 1.336 (2) | N3—O3 | 1.216 (2) |
| C5—H5 | 0.9300 | N4—H4A | 0.864 (15) |
| C6—C11 | 1.354 (2) | N4—H4B | 0.874 (16) |
| C6—C7 | 1.403 (2) | O5—H5A | 0.930 (19) |
| C6—N1 | 1.4540 (19) | O5—H5B | 0.90 (2) |
| C7—C8 | 1.375 (2) | O5'—H5C | 0.916 (19) |
| C7—N2 | 1.442 (2) | O5'—H5D | 0.913 (19) |
| C8—C9 | 1.374 (2) | ||
| N1—C1—C2 | 120.36 (15) | C8—C9—C10 | 121.78 (14) |
| N1—C1—H1 | 119.8 | C8—C9—N3 | 116.37 (15) |
| C2—C1—H1 | 119.8 | C10—C9—N3 | 121.85 (14) |
| C3—C2—C1 | 119.33 (16) | N4—C10—C9 | 126.50 (15) |
| C3—C2—H2 | 120.3 | N4—C10—C11 | 118.14 (16) |
| C1—C2—H2 | 120.3 | C9—C10—C11 | 115.35 (14) |
| C4—C3—C2 | 119.29 (16) | C6—C11—C10 | 122.40 (16) |
| C4—C3—H3 | 120.4 | C6—C11—H11 | 118.8 |
| C2—C3—H3 | 120.4 | C10—C11—H11 | 118.8 |
| C3—C4—C5 | 120.05 (18) | O2—N2—O1 | 123.14 (15) |
| C3—C4—H4 | 120.0 | O2—N2—C7 | 118.02 (14) |
| C5—C4—H4 | 120.0 | O1—N2—C7 | 118.83 (15) |
| N1—C5—C4 | 119.83 (17) | C1—N1—C5 | 121.11 (14) |
| N1—C5—H5 | 120.1 | C1—N1—C6 | 118.62 (13) |
| C4—C5—H5 | 120.1 | C5—N1—C6 | 120.26 (13) |
| C11—C6—C7 | 120.64 (14) | O4—N3—O3 | 122.92 (14) |
| C11—C6—N1 | 116.52 (14) | O4—N3—C9 | 118.69 (15) |
| C7—C6—N1 | 122.83 (14) | O3—N3—C9 | 118.39 (15) |
| C8—C7—C6 | 118.53 (14) | C10—N4—H4A | 121.1 (14) |
| C8—C7—N2 | 117.52 (15) | C10—N4—H4B | 120.2 (15) |
| C6—C7—N2 | 123.95 (14) | H4A—N4—H4B | 119 (2) |
| C9—C8—C7 | 121.18 (15) | H5A—O5—H5B | 119 (3) |
| C9—C8—H8 | 119.4 | H5A—O5—H5C | 119 (5) |
| C7—C8—H8 | 119.4 | H5C—O5'—H5D | 122 (4) |
| N1—C1—C2—C3 | 0.7 (3) | N4—C10—C11—C6 | −179.34 (16) |
| C1—C2—C3—C4 | −1.4 (3) | C9—C10—C11—C6 | −0.2 (2) |
| C2—C3—C4—C5 | 0.7 (3) | C8—C7—N2—O2 | −7.3 (2) |
| C3—C4—C5—N1 | 0.8 (3) | C6—C7—N2—O2 | 172.42 (16) |
| C11—C6—C7—C8 | 1.9 (2) | C8—C7—N2—O1 | 173.29 (15) |
| N1—C6—C7—C8 | −176.69 (14) | C6—C7—N2—O1 | −6.9 (2) |
| C11—C6—C7—N2 | −177.90 (15) | C2—C1—N1—C5 | 0.9 (3) |
| N1—C6—C7—N2 | 3.5 (2) | C2—C1—N1—C6 | 179.68 (16) |
| C6—C7—C8—C9 | 1.2 (2) | C4—C5—N1—C1 | −1.6 (3) |
| N2—C7—C8—C9 | −178.98 (14) | C4—C5—N1—C6 | 179.61 (18) |
| C7—C8—C9—C10 | −3.9 (2) | C11—C6—N1—C1 | −78.17 (19) |
| C7—C8—C9—N3 | 175.86 (15) | C7—C6—N1—C1 | 100.44 (18) |
| C8—C9—C10—N4 | −177.62 (17) | C11—C6—N1—C5 | 100.64 (19) |
| N3—C9—C10—N4 | 2.6 (3) | C7—C6—N1—C5 | −80.8 (2) |
| C8—C9—C10—C11 | 3.3 (2) | C8—C9—N3—O4 | −178.50 (16) |
| N3—C9—C10—C11 | −176.45 (14) | C10—C9—N3—O4 | 1.3 (2) |
| C7—C6—C11—C10 | −2.4 (2) | C8—C9—N3—O3 | 0.6 (2) |
| N1—C6—C11—C10 | 176.28 (14) | C10—C9—N3—O3 | −179.63 (15) |
| H··· | ||||
| N4—H4 | 0.86 (2) | 2.09 (2) | 2.671 (2) | 124 (2) |
| N4—H4 | 0.87 (2) | 2.35 (2) | 3.2162 (19) | 171 (2) |
| N4—H4 | 0.86 (2) | 2.56 (2) | 3.2268 (16) | 135 (2) |
| O5—H5 | 0.90 (2) | 2.34 (3) | 3.187 (3) | 158 (5) |
| O5—H5 | 0.93 (2) | 2.51 (2) | 3.429 (9) | 169 (5) |
| O5′—H5 | 0.91 (2) | 1.94 (3) | 2.815 (16) | 160 (5) |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N4—H4 | 0.86 (2) | 2.09 (2) | 2.671 (2) | 124 (2) |
| N4—H4 | 0.87 (2) | 2.35 (2) | 3.2162 (19) | 171 (2) |
| N4—H4 | 0.86 (2) | 2.56 (2) | 3.2268 (16) | 135 (2) |
| O5—H5 | 0.90 (2) | 2.34 (3) | 3.187 (3) | 158 (5) |
| O5—H5 | 0.93 (2) | 2.51 (2) | 3.429 (9) | 169 (5) |
| O5′—H5 | 0.91 (2) | 1.94 (3) | 2.815 (16) | 160 (5) |
Symmetry codes: (i) ; (ii) ; (iii) .