Literature DB >> 21523019

(1RS,6SR)-Ethyl 4,6-bis-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Grzegorz Dutkiewicz, B Narayana, K Veena, H S Yathirajan, Maciej Kubicki.   

Abstract

In the crystal structure of the title compound, C(21)H(18)F(2)O(3), the cyclo-hexene ring has a slightly distorted sofa conformation; the two benzene rings are inclined by 76.27 (8)° and their planes make dihedral angles of 16.65 (10) and 67.53 (7)° with the approximately planar part of the cyclo-hexenone ring [maximum deviation 0.044 (2) Å, while the sixth atom is displaced by 0.648 (3) Å from this plane]. In the crystal, weak inter-molecular C-H⋯O, C-H⋯F and C-H⋯π inter-actions join mol-ecules into a three-dimensional structure.

Entities:  

Year:  2011        PMID: 21523019      PMCID: PMC3051537          DOI: 10.1107/S1600536811000171

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For some biological applications of cyclo­hexa­nones, see: Li & Strobel (2001 ▶). For general properties, see: Jung (1991 ▶); Tabba et al. (1995 ▶). For asymmetry parameters, see: Duax & Norton (1975 ▶). For related structures, see: Anuradha et al. (2009 ▶); Li et al. (2009 ▶); Fun et al. (2008 ▶, 2009 ▶, 2010 ▶); Badshah et al. (2009 ▶).

Experimental

Crystal data

C21H18F2O3 M = 356.35 Monoclinic, a = 11.062 (2) Å b = 11.675 (3) Å c = 13.854 (3) Å β = 92.89 (2)° V = 1787.0 (7) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 295 K 0.45 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire2 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.947, T max = 1.000 14582 measured reflections 3926 independent reflections 2590 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.168 S = 1.11 3926 reflections 235 parameters H-atom parameters constrained Δρmax = 0.60 e Å−3 Δρmin = −0.24 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811000171/dn2648sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811000171/dn2648Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H18F2O3F(000) = 744
Mr = 356.35Dx = 1.325 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6918 reflections
a = 11.062 (2) Åθ = 2.9–28.1°
b = 11.675 (3) ŵ = 0.10 mm1
c = 13.854 (3) ÅT = 295 K
β = 92.89 (2)°Block, colourless
V = 1787.0 (7) Å30.45 × 0.2 × 0.2 mm
Z = 4
Oxford Diffraction Xcalibur Sapphire2 diffractometer3926 independent reflections
Radiation source: Enhance (Mo) X-ray Source2590 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 8.1929 pixels mm-1θmax = 28.2°, θmin = 2.9°
ω–scanh = −14→13
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)k = −15→14
Tmin = 0.947, Tmax = 1.000l = −16→17
14582 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.168H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0925P)2 + 0.1094P] where P = (Fo2 + 2Fc2)/3
3926 reflections(Δ/σ)max < 0.001
235 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.74323 (18)0.34723 (16)0.44006 (15)0.0454 (5)
H10.77160.34450.50820.054*
C110.61584 (18)0.29820 (17)0.43248 (16)0.0454 (5)
O120.55538 (16)0.28780 (15)0.35870 (12)0.0687 (5)
O130.58204 (14)0.26686 (13)0.51815 (11)0.0580 (4)
C140.4670 (2)0.2089 (2)0.5236 (2)0.0717 (7)
H1420.44850.16620.46470.086*
H1410.40290.26420.53200.086*
C150.4771 (4)0.1311 (4)0.6066 (3)0.1367 (17)
H1530.40180.09140.61250.205*
H1520.49560.17430.66450.205*
H1510.54040.07650.59740.205*
C20.74302 (18)0.47139 (15)0.40859 (14)0.0419 (5)
O20.65172 (14)0.52929 (12)0.41192 (11)0.0585 (4)
C30.85742 (17)0.51786 (15)0.37999 (14)0.0405 (5)
H30.86080.59560.36590.049*
C40.95848 (16)0.45610 (14)0.37261 (12)0.0338 (4)
C411.07396 (16)0.50657 (15)0.34287 (12)0.0360 (4)
C421.18418 (18)0.45216 (16)0.36282 (14)0.0431 (5)
H421.18560.38260.39560.052*
C431.2921 (2)0.49924 (19)0.33490 (16)0.0525 (5)
H431.36560.46290.34940.063*
C441.2873 (2)0.60004 (19)0.28573 (15)0.0533 (6)
F441.39211 (13)0.64622 (13)0.25678 (11)0.0824 (5)
C451.1821 (2)0.6560 (2)0.26431 (16)0.0609 (6)
H451.18200.72500.23090.073*
C461.0748 (2)0.60919 (17)0.29278 (15)0.0508 (5)
H461.00220.64710.27810.061*
C50.95652 (16)0.32986 (14)0.39434 (14)0.0381 (4)
H520.98850.31750.46000.046*
H511.00910.29060.35120.046*
C60.82998 (18)0.27777 (15)0.38320 (15)0.0440 (5)
H60.80350.28470.31490.053*
C610.83451 (16)0.15033 (15)0.40669 (15)0.0417 (5)
C620.8266 (2)0.10661 (18)0.49880 (16)0.0557 (6)
H620.81610.15620.55020.067*
C630.8341 (2)−0.0113 (2)0.51561 (18)0.0629 (6)
H630.8284−0.04110.57750.075*
C640.8499 (2)−0.08081 (17)0.4390 (2)0.0567 (6)
F640.85470 (16)−0.19620 (11)0.45443 (14)0.0970 (6)
C650.8613 (2)−0.04147 (17)0.34810 (19)0.0593 (6)
H650.8746−0.09140.29740.071*
C660.85233 (19)0.07498 (16)0.33294 (16)0.0491 (5)
H660.85860.10330.27070.059*
U11U22U33U12U13U23
C10.0443 (11)0.0402 (11)0.0518 (12)0.0010 (8)0.0040 (9)0.0007 (9)
C110.0393 (11)0.0390 (10)0.0576 (14)0.0033 (8)0.0016 (10)−0.0015 (9)
O120.0698 (12)0.0782 (12)0.0573 (10)−0.0158 (9)−0.0052 (9)−0.0040 (8)
O130.0470 (9)0.0678 (10)0.0592 (10)−0.0111 (7)0.0014 (7)0.0059 (8)
C140.0485 (14)0.0813 (17)0.0861 (18)−0.0126 (12)0.0113 (13)0.0076 (14)
C150.122 (3)0.164 (4)0.122 (3)−0.078 (3)−0.019 (2)0.057 (3)
C20.0448 (11)0.0346 (10)0.0462 (11)0.0060 (8)0.0004 (9)−0.0021 (8)
O20.0509 (9)0.0459 (8)0.0795 (11)0.0148 (7)0.0093 (8)0.0028 (7)
C30.0488 (12)0.0242 (8)0.0483 (11)0.0018 (8)0.0000 (9)0.0004 (8)
C40.0424 (10)0.0291 (9)0.0297 (9)−0.0012 (7)0.0005 (7)−0.0009 (7)
C410.0451 (11)0.0296 (9)0.0334 (10)−0.0040 (8)0.0028 (8)−0.0023 (7)
C420.0467 (11)0.0351 (9)0.0478 (12)−0.0016 (8)0.0057 (9)−0.0003 (8)
C430.0462 (12)0.0543 (12)0.0578 (13)−0.0023 (10)0.0113 (10)−0.0058 (11)
C440.0573 (14)0.0563 (13)0.0480 (12)−0.0163 (11)0.0189 (10)−0.0014 (10)
F440.0719 (10)0.0901 (11)0.0885 (10)−0.0272 (8)0.0355 (8)0.0064 (8)
C450.0766 (17)0.0492 (12)0.0581 (14)−0.0137 (12)0.0132 (12)0.0146 (11)
C460.0587 (13)0.0440 (11)0.0499 (12)−0.0008 (9)0.0046 (10)0.0142 (9)
C50.0398 (10)0.0301 (9)0.0450 (11)0.0022 (7)0.0073 (8)0.0018 (8)
C60.0482 (12)0.0328 (10)0.0512 (12)0.0010 (8)0.0048 (9)0.0011 (8)
C610.0360 (10)0.0313 (9)0.0581 (13)−0.0032 (7)0.0061 (9)0.0024 (9)
C620.0621 (14)0.0476 (12)0.0579 (14)−0.0016 (10)0.0069 (11)−0.0028 (10)
C630.0655 (16)0.0566 (14)0.0661 (16)−0.0028 (11)−0.0015 (11)0.0240 (12)
C640.0511 (13)0.0287 (10)0.0884 (18)−0.0007 (9)−0.0142 (11)0.0060 (11)
F640.1057 (13)0.0316 (7)0.1500 (15)0.0013 (7)−0.0293 (11)0.0191 (8)
C650.0605 (15)0.0387 (11)0.0777 (17)0.0028 (10)−0.0064 (12)−0.0118 (11)
C660.0511 (12)0.0362 (10)0.0597 (13)−0.0016 (9)0.0014 (10)−0.0003 (9)
C1—C61.508 (3)C43—C441.359 (3)
C1—C21.514 (3)C43—H430.9300
C1—C111.520 (3)C44—C451.354 (3)
C1—H10.9800C44—F441.358 (2)
C11—O121.199 (2)C45—C461.382 (3)
C11—O131.314 (2)C45—H450.9300
O13—C141.446 (3)C46—H460.9300
C14—C151.466 (4)C5—C61.527 (3)
C14—H1420.9700C5—H520.9700
C14—H1410.9700C5—H510.9700
C15—H1530.9600C6—C611.523 (2)
C15—H1520.9600C6—H60.9800
C15—H1510.9600C61—C661.370 (3)
C2—O21.218 (2)C61—C621.381 (3)
C2—C31.450 (3)C62—C631.398 (3)
C3—C41.339 (3)C62—H620.9300
C3—H30.9300C63—C641.354 (3)
C4—C411.484 (2)C63—H630.9300
C4—C51.505 (2)C64—C651.352 (3)
C41—C461.385 (3)C64—F641.365 (2)
C41—C421.390 (3)C65—C661.379 (3)
C42—C431.387 (3)C65—H650.9300
C42—H420.9300C66—H660.9300
C6—C1—C2110.86 (16)C45—C44—F44118.8 (2)
C6—C1—C11111.93 (17)C45—C44—C43122.6 (2)
C2—C1—C11110.66 (16)F44—C44—C43118.6 (2)
C6—C1—H1107.7C44—C45—C46119.2 (2)
C2—C1—H1107.7C44—C45—H45120.4
C11—C1—H1107.7C46—C45—H45120.4
O12—C11—O13124.74 (19)C45—C46—C41120.8 (2)
O12—C11—C1124.9 (2)C45—C46—H46119.6
O13—C11—C1110.33 (18)C41—C46—H46119.6
C11—O13—C14117.95 (18)C4—C5—C6113.10 (15)
O13—C14—C15107.4 (2)C4—C5—H52109.0
O13—C14—H142110.2C6—C5—H52109.0
C15—C14—H142110.2C4—C5—H51109.0
O13—C14—H141110.2C6—C5—H51109.0
C15—C14—H141110.2H52—C5—H51107.8
H142—C14—H141108.5C1—C6—C61115.37 (16)
C14—C15—H153109.5C1—C6—C5109.70 (16)
C14—C15—H152109.5C61—C6—C5110.32 (15)
H153—C15—H152109.5C1—C6—H6107.0
C14—C15—H151109.5C61—C6—H6107.0
H153—C15—H151109.5C5—C6—H6107.0
H152—C15—H151109.5C66—C61—C62118.03 (18)
O2—C2—C3122.63 (17)C66—C61—C6118.18 (18)
O2—C2—C1120.65 (17)C62—C61—C6123.74 (18)
C3—C2—C1116.63 (16)C61—C62—C63120.8 (2)
C4—C3—C2124.26 (17)C61—C62—H62119.6
C4—C3—H3117.9C63—C62—H62119.6
C2—C3—H3117.9C64—C63—C62117.9 (2)
C3—C4—C41122.77 (16)C64—C63—H63121.0
C3—C4—C5119.46 (16)C62—C63—H63121.0
C41—C4—C5117.76 (15)C65—C64—C63123.24 (19)
C46—C41—C42117.85 (17)C65—C64—F64118.5 (2)
C46—C41—C4120.67 (17)C63—C64—F64118.3 (2)
C42—C41—C4121.47 (16)C64—C65—C66117.9 (2)
C43—C42—C41121.47 (19)C64—C65—H65121.1
C43—C42—H42119.3C66—C65—H65121.1
C41—C42—H42119.3C61—C66—C65122.1 (2)
C44—C43—C42118.0 (2)C61—C66—H66118.9
C44—C43—H43121.0C65—C66—H66118.9
C42—C43—H43121.0
C6—C1—C11—O12−60.8 (3)C44—C45—C46—C410.2 (3)
C2—C1—C11—O1263.4 (3)C42—C41—C46—C45−0.4 (3)
C6—C1—C11—O13118.10 (19)C4—C41—C46—C45−179.49 (18)
C2—C1—C11—O13−117.69 (18)C3—C4—C5—C623.3 (2)
O12—C11—O13—C144.2 (3)C41—C4—C5—C6−156.25 (16)
C1—C11—O13—C14−174.69 (18)C2—C1—C6—C61−178.09 (16)
C11—O13—C14—C15149.6 (3)C11—C1—C6—C61−54.0 (2)
C6—C1—C2—O2148.72 (19)C2—C1—C6—C556.6 (2)
C11—C1—C2—O223.9 (3)C11—C1—C6—C5−179.31 (16)
C6—C1—C2—C3−34.5 (2)C4—C5—C6—C1−51.6 (2)
C11—C1—C2—C3−159.36 (17)C4—C5—C6—C61−179.72 (15)
O2—C2—C3—C4−177.82 (19)C1—C6—C61—C66144.90 (19)
C1—C2—C3—C45.5 (3)C5—C6—C61—C66−90.1 (2)
C2—C3—C4—C41179.85 (16)C1—C6—C61—C62−37.8 (3)
C2—C3—C4—C50.3 (3)C5—C6—C61—C6287.2 (2)
C3—C4—C41—C46−20.5 (3)C66—C61—C62—C63−1.3 (3)
C5—C4—C41—C46159.02 (18)C6—C61—C62—C63−178.6 (2)
C3—C4—C41—C42160.47 (18)C61—C62—C63—C640.3 (3)
C5—C4—C41—C42−20.0 (2)C62—C63—C64—C651.4 (3)
C46—C41—C42—C430.9 (3)C62—C63—C64—F64−178.6 (2)
C4—C41—C42—C43179.90 (17)C63—C64—C65—C66−2.1 (4)
C41—C42—C43—C44−1.0 (3)F64—C64—C65—C66177.94 (19)
C42—C43—C44—C450.8 (3)C62—C61—C66—C650.6 (3)
C42—C43—C44—F44−179.08 (18)C6—C61—C66—C65178.04 (19)
F44—C44—C45—C46179.47 (18)C64—C65—C66—C611.0 (3)
C43—C44—C45—C46−0.4 (4)
D—H···AD—HH···AD···AD—H···A
C46—H46···O12i0.932.563.244 (3)130
C5—H52···F64ii0.972.493.278 (2)138
C5—H51···F44iii0.972.543.484 (2)165
C1—H1···Cg1iv0.982.763.653 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C46—H46⋯O12i0.932.563.244 (3)130
C5—H52⋯F64ii0.972.493.278 (2)138
C5—H51⋯F44iii0.972.543.484 (2)165
C1—H1⋯Cg1iv0.982.763.653 (3)152

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  8 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Jesterone and hydroxy-jesterone antioomycete cyclohexenone epoxides from the endophytic fungus Pestalotiopsis jesteri.

Authors:  J Y Li; G A Strobel
Journal:  Phytochemistry       Date:  2001-05       Impact factor: 4.072

3.  Ethyl 6-(4-chloro-phen-yl)-4-(4-methoxy-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; K S Girish; Balakrishna Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

4.  Methyl 4,6-bis-(4-fluoro-phen-yl)-2-oxo-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-17

5.  Ethyl 6-r-(2-chlorophenyl)-2-oxo-4-phenyl-cyclohex-3-ene-1-t-carboxylate.

Authors:  N Anuradha; A Thiruvalluvar; K Pandiarajan; C Yuvaraj
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-20

6.  Ethyl 4-(4-methoxy-phen-yl)-2-oxo-6-phenyl-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hoong-Kun Fun; Samuel Robinson Jebas; Jyothi N Rao; B Kalluraya
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-11-26

7.  (±)-Ethyl 6-(6-meth-oxy-2-naphth-yl)-4-(4-methyl-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hongqi Li; A N Mayekar; B Narayana; H S Yathirajan; William T A Harrison
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-07

8.  Ethyl 4-(4-bromo-phen-yl)-6-(4-ethoxy-phen-yl)-2-oxocyclo-hex-3-enecarboxyl-ate.

Authors:  Amir Badshah; Aurangzeb Hasan; Cecilia R Barbarín
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-06
  8 in total
  6 in total

1.  (1RS,6SR)-Ethyl 4-(2,4-dichloro-phen-yl)-6-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Grzegorz Dutkiewicz; B Narayana; K Veena; H S Yathirajan; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-22

2.  Ethyl 2-amino-4,6-bis-(4-fluoro-phen-yl)cyclo-hexa-1,3-diene-1-carboxyl-ate.

Authors:  Jerry P Jasinski; James A Golen; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-04

3.  Ethyl 6-(4-chloro-phen-yl)-4-(4-fluoro-phen-yl)-2-oxo-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  M Sapnakumari; B Narayana; H S Yathirajan; Jerry P Jasinski; Ray J Butcher
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-11-30

4.  Crystal structure of ethyl (1RS,6SR)-4-(2-methyl-1H-imidazol-4-yl)-2-oxo-6-(2,3,5-tri-chloro-phen-yl)cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Billava J Mohan; Balladka K Sarojini; Hemmige S Yathirajan; Ravindranath Rathore; Christopher Glidewell
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-01-01

5.  Ethyl 6-(4-meth-oxy-phen-yl)-2-oxo-4-phenyl-cyclo-hex-3-ene-carboxyl-ate.

Authors:  Hoong-Kun Fun; Abbas Farhadikoutenaei; B K Sarojini; B J Mohan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-08-25

6.  Ethyl 6-(4-bromo-phen-yl)-4-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; M Sapnakumari; B Narayana; B K Sarojini
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-09-12
  6 in total

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