| Literature DB >> 26870579 |
Billava J Mohan1, Balladka K Sarojini2, Hemmige S Yathirajan3, Ravindranath Rathore4, Christopher Glidewell5.
Abstract
The title compound, C19H17Cl3N2O3, has been prepared in a cyclo-condensation reaction between 2,3,5-tri-chloro-benzaldehye and 4-acetyl-2-methyl-1H-imidazole. The cyclo-hexenone ring adopts an envelope conformation with the C atom substituted by the tri-chloro-phenyl ring as the flap. The mutually trans ester and aryl substituents both occupy equatorial sites. In the crystal, a combination of N-H⋯O and C-H⋯N hydrogen bonds links the mol-ecules into ribbons of edge-fused centrosymmetric rings, which enclose R 2 (2)(14) and R 4 (4)(16) alternate ring motifs, propagating along the b-axis direction.Entities:
Keywords: crystal structure; cyclocondensation reaction; hydrogen bonding; molecular conformation; molecular stereochemistry
Year: 2016 PMID: 26870579 PMCID: PMC4704750 DOI: 10.1107/S2056989015023245
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The synthesis of the title compound (I).
Figure 2The molecular structure of the (1R,6S) enantiomer of compound (I), showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N41—H41⋯O2i | 0.79 (4) | 2.10 (4) | 2.878 (3) | 167 (3) |
| C1—H1⋯N43ii | 0.98 | 2.60 | 3.538 (4) | 161 |
Symmetry codes: (i) ; (ii) .
Figure 3A partial view of the crystal packing of compound (I), showing the formation of a ribbon of edge-fused hydrogen-bonded (14) and (16) rings running parallel to the [100] direction (see Table 1 ▸). Hydrogen bonds are shown as dashed lines and, for the sake of clarity, the H atoms not involved in the motifs shown have been omitted.
Experimental details
| Crystal data | |
| Chemical formula | C19H17Cl3N2O3 |
|
| 427.70 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 295 |
|
| 9.753 (5), 10.029 (6), 11.099 (5) |
| α, β, γ (°) | 106.281 (4), 96.420 (5), 104.913 (5) |
|
| 987.0 (9) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.49 |
| Crystal size (mm) | 0.26 × 0.21 × 0.18 |
| Data collection | |
| Diffractometer | Bruker APEXII area detector |
| Absorption correction | Multi-scan ( |
|
| 0.789, 0.916 |
| No. of measured, independent and observed [ | 18900, 4534, 3178 |
|
| 0.026 |
| (sin θ/λ)max (Å−1) | 0.651 |
| Refinement | |
|
| 0.050, 0.146, 1.03 |
| No. of reflections | 4534 |
| No. of parameters | 249 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.58, −0.54 |
Computer programs: APEX2 and SAINT-Plus (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and PLATON (Spek, 2009 ▸).
| C19H17Cl3N2O3 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 5020 reflections | |
| θ = 2.7–28.7° | |
| α = 106.281 (4)° | µ = 0.49 mm−1 |
| β = 96.420 (5)° | |
| γ = 104.913 (5)° | Block, colourless |
| 0.26 × 0.21 × 0.18 mm |
| Bruker APEXII area-detector diffractometer | 4534 independent reflections |
| Radiation source: fine-focus sealed tube | 3178 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 27.6°, θmin = 2.2° |
| Absorption correction: multi-scan ( | |
| 18900 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 4534 reflections | Δρmax = 0.58 e Å−3 |
| 249 parameters | Δρmin = −0.54 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| C1 | 0.6401 (2) | 0.3358 (2) | 0.5952 (2) | 0.0332 (5) | |
| H1 | 0.6710 | 0.4417 | 0.6366 | 0.040* | |
| C2 | 0.6017 (2) | 0.3076 (3) | 0.4517 (2) | 0.0343 (5) | |
| O2 | 0.69386 (18) | 0.3027 (2) | 0.38603 (16) | 0.0473 (4) | |
| C3 | 0.4555 (2) | 0.2959 (3) | 0.3987 (2) | 0.0354 (5) | |
| H3 | 0.4295 | 0.2757 | 0.3108 | 0.042* | |
| C4 | 0.3547 (2) | 0.3129 (2) | 0.4705 (2) | 0.0331 (5) | |
| C5 | 0.3877 (2) | 0.3355 (3) | 0.6115 (2) | 0.0370 (5) | |
| H5A | 0.3007 | 0.2896 | 0.6373 | 0.044* | |
| H5B | 0.4171 | 0.4391 | 0.6583 | 0.044* | |
| C6 | 0.5070 (2) | 0.2725 (3) | 0.6461 (2) | 0.0336 (5) | |
| H6 | 0.4723 | 0.1671 | 0.6021 | 0.040* | |
| C11 | 0.7669 (3) | 0.2835 (3) | 0.6267 (2) | 0.0378 (5) | |
| O11 | 0.88835 (19) | 0.3608 (2) | 0.66651 (19) | 0.0516 (5) | |
| O12 | 0.7266 (2) | 0.1410 (2) | 0.6038 (2) | 0.0547 (5) | |
| C12 | 0.8381 (4) | 0.0789 (4) | 0.6394 (4) | 0.0731 (10) | |
| H12A | 0.9302 | 0.1321 | 0.6260 | 0.088* | |
| H12B | 0.8140 | −0.0219 | 0.5857 | 0.088* | |
| C13 | 0.8502 (6) | 0.0866 (5) | 0.7739 (5) | 0.1074 (16) | |
| H13A | 0.7588 | 0.0341 | 0.7870 | 0.161* | |
| H13B | 0.8767 | 0.1867 | 0.8270 | 0.161* | |
| H13C | 0.9229 | 0.0441 | 0.7961 | 0.161* | |
| N41 | −0.0094 (2) | 0.3117 (3) | 0.3823 (2) | 0.0491 (6) | |
| H41 | −0.086 (4) | 0.321 (3) | 0.393 (3) | 0.059* | |
| C42 | 0.0373 (3) | 0.2879 (3) | 0.2703 (3) | 0.0452 (6) | |
| N43 | 0.1716 (2) | 0.2869 (2) | 0.28599 (19) | 0.0404 (5) | |
| C44 | 0.2128 (2) | 0.3098 (3) | 0.4154 (2) | 0.0344 (5) | |
| C45 | 0.1003 (3) | 0.3263 (3) | 0.4751 (3) | 0.0435 (6) | |
| H45 | 0.0996 | 0.3440 | 0.5618 | 0.052* | |
| C46 | −0.0557 (3) | 0.2675 (4) | 0.1471 (3) | 0.0726 (10) | |
| H46A | −0.0195 | 0.2161 | 0.0773 | 0.109* | |
| H46B | −0.0548 | 0.3609 | 0.1399 | 0.109* | |
| H46C | −0.1530 | 0.2122 | 0.1442 | 0.109* | |
| C61 | 0.5373 (2) | 0.2972 (3) | 0.7887 (2) | 0.0351 (5) | |
| C62 | 0.4533 (3) | 0.2008 (3) | 0.8401 (2) | 0.0453 (6) | |
| Cl62 | 0.31485 (11) | 0.05093 (9) | 0.74148 (7) | 0.0798 (3) | |
| C63 | 0.4784 (3) | 0.2242 (3) | 0.9712 (3) | 0.0538 (7) | |
| Cl63 | 0.37058 (14) | 0.10827 (13) | 1.03524 (9) | 0.1058 (5) | |
| C64 | 0.5884 (3) | 0.3421 (3) | 1.0529 (2) | 0.0508 (7) | |
| H64 | 0.6071 | 0.3565 | 1.1404 | 0.061* | |
| C65 | 0.6695 (3) | 0.4379 (3) | 1.0018 (2) | 0.0454 (6) | |
| Cl65 | 0.80666 (9) | 0.58707 (10) | 1.10331 (7) | 0.0736 (3) | |
| C66 | 0.6450 (3) | 0.4174 (3) | 0.8725 (2) | 0.0401 (5) | |
| H66 | 0.7012 | 0.4848 | 0.8410 | 0.048* |
| C1 | 0.0278 (10) | 0.0376 (12) | 0.0331 (11) | 0.0076 (9) | 0.0063 (9) | 0.0118 (9) |
| C2 | 0.0283 (11) | 0.0410 (12) | 0.0354 (12) | 0.0108 (9) | 0.0097 (9) | 0.0134 (10) |
| O2 | 0.0297 (8) | 0.0772 (13) | 0.0393 (9) | 0.0183 (8) | 0.0135 (7) | 0.0209 (9) |
| C3 | 0.0285 (11) | 0.0505 (14) | 0.0285 (11) | 0.0115 (10) | 0.0070 (8) | 0.0144 (10) |
| C4 | 0.0287 (11) | 0.0377 (12) | 0.0328 (11) | 0.0086 (9) | 0.0073 (9) | 0.0121 (9) |
| C5 | 0.0330 (12) | 0.0501 (14) | 0.0313 (11) | 0.0154 (10) | 0.0118 (9) | 0.0140 (10) |
| C6 | 0.0309 (11) | 0.0405 (12) | 0.0293 (11) | 0.0088 (9) | 0.0077 (9) | 0.0123 (9) |
| C11 | 0.0357 (12) | 0.0470 (14) | 0.0335 (12) | 0.0142 (10) | 0.0089 (9) | 0.0150 (10) |
| O11 | 0.0310 (9) | 0.0553 (11) | 0.0652 (12) | 0.0095 (8) | 0.0048 (8) | 0.0193 (9) |
| O12 | 0.0439 (10) | 0.0450 (11) | 0.0700 (13) | 0.0124 (8) | −0.0010 (9) | 0.0161 (9) |
| C12 | 0.063 (2) | 0.0548 (19) | 0.107 (3) | 0.0243 (16) | 0.0036 (19) | 0.0332 (19) |
| C13 | 0.121 (4) | 0.098 (3) | 0.113 (4) | 0.033 (3) | −0.008 (3) | 0.061 (3) |
| N41 | 0.0257 (10) | 0.0629 (15) | 0.0679 (15) | 0.0175 (10) | 0.0148 (10) | 0.0295 (12) |
| C42 | 0.0323 (12) | 0.0508 (15) | 0.0526 (15) | 0.0106 (11) | 0.0030 (11) | 0.0208 (12) |
| N43 | 0.0308 (10) | 0.0521 (12) | 0.0397 (11) | 0.0137 (9) | 0.0050 (8) | 0.0166 (9) |
| C44 | 0.0268 (10) | 0.0400 (12) | 0.0375 (12) | 0.0091 (9) | 0.0082 (9) | 0.0144 (10) |
| C45 | 0.0312 (12) | 0.0572 (16) | 0.0476 (14) | 0.0154 (11) | 0.0142 (10) | 0.0209 (12) |
| C46 | 0.0450 (17) | 0.099 (3) | 0.070 (2) | 0.0196 (17) | −0.0092 (15) | 0.0305 (19) |
| C61 | 0.0336 (11) | 0.0425 (13) | 0.0310 (11) | 0.0139 (9) | 0.0075 (9) | 0.0120 (10) |
| C62 | 0.0542 (15) | 0.0442 (14) | 0.0324 (12) | 0.0069 (11) | 0.0110 (11) | 0.0109 (10) |
| Cl62 | 0.0963 (7) | 0.0659 (5) | 0.0445 (4) | −0.0258 (4) | 0.0122 (4) | 0.0142 (4) |
| C63 | 0.0669 (18) | 0.0590 (17) | 0.0371 (14) | 0.0121 (14) | 0.0189 (13) | 0.0212 (13) |
| Cl63 | 0.1377 (10) | 0.1048 (8) | 0.0488 (5) | −0.0215 (7) | 0.0276 (5) | 0.0344 (5) |
| C64 | 0.0556 (16) | 0.0693 (18) | 0.0284 (12) | 0.0232 (14) | 0.0089 (11) | 0.0132 (12) |
| C65 | 0.0390 (13) | 0.0565 (16) | 0.0340 (12) | 0.0166 (11) | 0.0019 (10) | 0.0044 (11) |
| Cl65 | 0.0584 (5) | 0.0874 (6) | 0.0435 (4) | −0.0011 (4) | −0.0029 (3) | −0.0008 (4) |
| C66 | 0.0354 (12) | 0.0484 (14) | 0.0353 (12) | 0.0111 (10) | 0.0077 (10) | 0.0130 (10) |
| C1—C11 | 1.506 (3) | C13—H13C | 0.9600 |
| C1—C2 | 1.522 (3) | N41—C45 | 1.348 (3) |
| C1—C6 | 1.532 (3) | N41—C42 | 1.351 (4) |
| C1—H1 | 0.9800 | N41—H41 | 0.79 (3) |
| C2—O2 | 1.221 (3) | C42—N43 | 1.306 (3) |
| C2—C3 | 1.443 (3) | C42—C46 | 1.485 (4) |
| C3—C4 | 1.347 (3) | N43—C44 | 1.384 (3) |
| C3—H3 | 0.9300 | C44—C45 | 1.365 (3) |
| C4—C44 | 1.438 (3) | C45—H45 | 0.9300 |
| C4—C5 | 1.502 (3) | C46—H46A | 0.9600 |
| C5—C6 | 1.521 (3) | C46—H46B | 0.9600 |
| C5—H5A | 0.9700 | C46—H46C | 0.9600 |
| C5—H5B | 0.9700 | C61—C66 | 1.387 (3) |
| C6—C61 | 1.514 (3) | C61—C62 | 1.391 (3) |
| C6—H6 | 0.9800 | C62—C63 | 1.390 (4) |
| C11—O11 | 1.191 (3) | C62—Cl62 | 1.727 (3) |
| C11—O12 | 1.322 (3) | C63—C64 | 1.378 (4) |
| O12—C12 | 1.454 (4) | C63—Cl63 | 1.722 (3) |
| C12—C13 | 1.463 (6) | C64—C65 | 1.373 (4) |
| C12—H12A | 0.9700 | C64—H64 | 0.9300 |
| C12—H12B | 0.9700 | C65—C66 | 1.376 (3) |
| C13—H13A | 0.9600 | C65—Cl65 | 1.727 (3) |
| C13—H13B | 0.9600 | C66—H66 | 0.9300 |
| C11—C1—C2 | 110.53 (18) | C12—C13—H13C | 109.5 |
| C11—C1—C6 | 113.77 (19) | H13A—C13—H13C | 109.5 |
| C2—C1—C6 | 110.99 (18) | H13B—C13—H13C | 109.5 |
| C11—C1—H1 | 107.1 | C45—N41—C42 | 108.0 (2) |
| C2—C1—H1 | 107.1 | C45—N41—H41 | 125 (2) |
| C6—C1—H1 | 107.1 | C42—N41—H41 | 127 (2) |
| O2—C2—C3 | 121.8 (2) | N43—C42—N41 | 111.5 (2) |
| O2—C2—C1 | 120.7 (2) | N43—C42—C46 | 125.8 (3) |
| C3—C2—C1 | 117.43 (18) | N41—C42—C46 | 122.7 (3) |
| C4—C3—C2 | 123.1 (2) | C42—N43—C44 | 105.2 (2) |
| C4—C3—H3 | 118.4 | C45—C44—N43 | 109.6 (2) |
| C2—C3—H3 | 118.4 | C45—C44—C4 | 128.4 (2) |
| C3—C4—C44 | 121.5 (2) | N43—C44—C4 | 121.97 (19) |
| C3—C4—C5 | 120.7 (2) | N41—C45—C44 | 105.8 (2) |
| C44—C4—C5 | 117.83 (19) | N41—C45—H45 | 127.1 |
| C4—C5—C6 | 111.86 (18) | C44—C45—H45 | 127.1 |
| C4—C5—H5A | 109.2 | C42—C46—H46A | 109.5 |
| C6—C5—H5A | 109.2 | C42—C46—H46B | 109.5 |
| C4—C5—H5B | 109.2 | H46A—C46—H46B | 109.5 |
| C6—C5—H5B | 109.2 | C42—C46—H46C | 109.5 |
| H5A—C5—H5B | 107.9 | H46A—C46—H46C | 109.5 |
| C61—C6—C5 | 110.43 (18) | H46B—C46—H46C | 109.5 |
| C61—C6—C1 | 113.84 (18) | C66—C61—C62 | 117.8 (2) |
| C5—C6—C1 | 109.12 (19) | C66—C61—C6 | 121.8 (2) |
| C61—C6—H6 | 107.7 | C62—C61—C6 | 120.3 (2) |
| C5—C6—H6 | 107.7 | C63—C62—C61 | 120.7 (2) |
| C1—C6—H6 | 107.7 | C63—C62—Cl62 | 119.0 (2) |
| O11—C11—O12 | 124.3 (2) | C61—C62—Cl62 | 120.26 (19) |
| O11—C11—C1 | 124.2 (2) | C64—C63—C62 | 120.7 (2) |
| O12—C11—C1 | 111.6 (2) | C64—C63—Cl63 | 118.6 (2) |
| C11—O12—C12 | 116.6 (2) | C62—C63—Cl63 | 120.7 (2) |
| O12—C12—C13 | 110.1 (3) | C65—C64—C63 | 118.3 (2) |
| O12—C12—H12A | 109.6 | C65—C64—H64 | 120.9 |
| C13—C12—H12A | 109.6 | C63—C64—H64 | 120.9 |
| O12—C12—H12B | 109.6 | C64—C65—C66 | 121.7 (2) |
| C13—C12—H12B | 109.6 | C64—C65—Cl65 | 118.8 (2) |
| H12A—C12—H12B | 108.1 | C66—C65—Cl65 | 119.5 (2) |
| C12—C13—H13A | 109.5 | C65—C66—C61 | 120.7 (2) |
| C12—C13—H13B | 109.5 | C65—C66—H66 | 119.7 |
| H13A—C13—H13B | 109.5 | C61—C66—H66 | 119.7 |
| C11—C1—C2—O2 | −27.7 (3) | C42—N43—C44—C4 | 178.7 (2) |
| C6—C1—C2—O2 | −154.8 (2) | C3—C4—C44—C45 | −179.5 (3) |
| C11—C1—C2—C3 | 156.0 (2) | C5—C4—C44—C45 | 0.7 (4) |
| C6—C1—C2—C3 | 28.9 (3) | C3—C4—C44—N43 | 1.1 (4) |
| O2—C2—C3—C4 | −174.3 (2) | C5—C4—C44—N43 | −178.8 (2) |
| C1—C2—C3—C4 | 1.9 (3) | C42—N41—C45—C44 | −0.3 (3) |
| C2—C3—C4—C44 | 175.9 (2) | N43—C44—C45—N41 | 0.8 (3) |
| C2—C3—C4—C5 | −4.2 (4) | C4—C44—C45—N41 | −178.8 (2) |
| C3—C4—C5—C6 | −24.9 (3) | C5—C6—C61—C66 | −93.7 (3) |
| C44—C4—C5—C6 | 154.9 (2) | C1—C6—C61—C66 | 29.5 (3) |
| C4—C5—C6—C61 | −179.98 (19) | C5—C6—C61—C62 | 84.2 (3) |
| C4—C5—C6—C1 | 54.2 (3) | C1—C6—C61—C62 | −152.7 (2) |
| C11—C1—C6—C61 | 54.8 (3) | C66—C61—C62—C63 | −0.7 (4) |
| C2—C1—C6—C61 | −179.81 (19) | C6—C61—C62—C63 | −178.6 (2) |
| C11—C1—C6—C5 | 178.64 (19) | C66—C61—C62—Cl62 | 178.65 (19) |
| C2—C1—C6—C5 | −56.0 (2) | C6—C61—C62—Cl62 | 0.7 (3) |
| C2—C1—C11—O11 | 99.8 (3) | C61—C62—C63—C64 | −1.0 (4) |
| C6—C1—C11—O11 | −134.6 (2) | Cl62—C62—C63—C64 | 179.6 (2) |
| C2—C1—C11—O12 | −79.8 (2) | C61—C62—C63—Cl63 | 177.8 (2) |
| C6—C1—C11—O12 | 45.8 (3) | Cl62—C62—C63—Cl63 | −1.5 (4) |
| O11—C11—O12—C12 | 4.8 (4) | C62—C63—C64—C65 | 1.9 (4) |
| C1—C11—O12—C12 | −175.6 (2) | Cl63—C63—C64—C65 | −177.0 (2) |
| C11—O12—C12—C13 | 86.1 (4) | C63—C64—C65—C66 | −1.1 (4) |
| C45—N41—C42—N43 | −0.2 (3) | C63—C64—C65—Cl65 | 179.4 (2) |
| C45—N41—C42—C46 | −179.7 (3) | C64—C65—C66—C61 | −0.7 (4) |
| N41—C42—N43—C44 | 0.7 (3) | Cl65—C65—C66—C61 | 178.85 (19) |
| C46—C42—N43—C44 | −179.9 (3) | C62—C61—C66—C65 | 1.5 (4) |
| C42—N43—C44—C45 | −0.9 (3) | C6—C61—C66—C65 | 179.4 (2) |
| H··· | ||||
| N41—H41···O2i | 0.79 (4) | 2.10 (4) | 2.878 (3) | 167 (3) |
| C1—H1···N43ii | 0.98 | 2.60 | 3.538 (4) | 161 |