Literature DB >> 22412501

Ethyl 2-amino-4,6-bis-(4-fluoro-phen-yl)cyclo-hexa-1,3-diene-1-carboxyl-ate.

Jerry P Jasinski, James A Golen, S Samshuddin, B Narayana, H S Yathirajan.   

Abstract

In the title compound, C(21)H(19)F(2)NO(2), the cyclo-hexa-1,3-diene ring is in a distorted envelope conformation. The dihedral angles between the mean planes of the diene moiety and the two fluoro-phenyl rings are 42.8 (2) and 75.0 (5)°. The two fluoro-phenyl rings are inclined to one another by 87.0 (3)°. In the crystal, intra-molecular N-H⋯O hydrogen bonds and weak N-H⋯O and N-H⋯F inter-molecular inter-actions are observed forming an infinite two-dimensional network along [011].

Entities:  

Year:  2012        PMID: 22412501      PMCID: PMC3297311          DOI: 10.1107/S160053681200373X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the applications of cyclo­hexenones, see: Padmavathi et al. (1999 ▶, 2000 ▶); Padmavathi, Sharmila, Balaiah et al. (2001 ▶); Padmavathi, Sharmila, Somashekara Reddy & Bhaskar Reddy (2001 ▶). For the structure of the precursor of the title compound, see: Dutkiewicz et al. (2011 ▶). For various derivatives of 4,4-difluoro­chalcone, see: Fun et al. (2010a ▶,b ▶); Jasinski et al. (2010a ▶,b ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H19F2NO2 M = 355.37 Orthorhombic, a = 18.0199 (5) Å b = 9.6391 (2) Å c = 21.0754 (7) Å V = 3660.70 (18) Å3 Z = 8 Cu Kα radiation μ = 0.80 mm−1 T = 173 K 0.20 × 0.14 × 0.12 mm

Data collection

Oxford Xcalibur Eos Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010 ▶) T min = 0.856, T max = 0.910 10556 measured reflections 3461 independent reflections 2612 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.180 S = 1.04 3461 reflections 245 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.41 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S160053681200373X/mw2046sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681200373X/mw2046Isup2.hkl Supplementary material file. DOI: 10.1107/S160053681200373X/mw2046Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H19F2NO2F(000) = 1488
Mr = 355.37Dx = 1.290 Mg m3
Orthorhombic, PbcnCu Kα radiation, λ = 1.54178 Å
Hall symbol: -P 2n 2abCell parameters from 4418 reflections
a = 18.0199 (5) Åθ = 3.2–71.3°
b = 9.6391 (2) ŵ = 0.80 mm1
c = 21.0754 (7) ÅT = 173 K
V = 3660.70 (18) Å3Block, yellow
Z = 80.20 × 0.14 × 0.12 mm
Oxford Xcalibur Eos Gemini diffractometer3461 independent reflections
Radiation source: Enhance (Cu) X-ray Source2612 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
Detector resolution: 16.1500 pixels mm-1θmax = 71.4°, θmin = 4.2°
ω scansh = −21→16
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2010)k = −11→11
Tmin = 0.856, Tmax = 0.910l = −22→25
10556 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.180w = 1/[σ2(Fo2) + (0.1072P)2 + 0.4506P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
3461 reflectionsΔρmax = 0.41 e Å3
245 parametersΔρmin = −0.21 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0010 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.28820 (7)0.39132 (16)0.58085 (8)0.0963 (5)
F20.66890 (12)0.94956 (19)0.80642 (12)0.1445 (8)
O10.57361 (8)0.00028 (13)0.57519 (7)0.0679 (4)
O20.66652 (8)0.05261 (14)0.50837 (8)0.0695 (4)
N10.72288 (11)0.3120 (2)0.51875 (9)0.0692 (5)
H1B0.7509 (15)0.380 (3)0.5083 (10)0.076 (7)*
H1A0.7197 (12)0.239 (2)0.4942 (11)0.066 (6)*
C10.49783 (15)−0.1988 (2)0.57203 (16)0.0931 (8)
H1C0.4854−0.28320.54840.140*
H1D0.4545−0.13750.57340.140*
H1E0.5124−0.22350.61540.140*
C20.56045 (13)−0.12602 (19)0.53997 (12)0.0746 (6)
H2A0.6054−0.18500.54010.089*
H2B0.5473−0.10430.49540.089*
C30.62737 (10)0.08577 (18)0.55369 (10)0.0578 (5)
C40.63143 (11)0.21328 (19)0.58891 (10)0.0572 (5)
C50.67799 (11)0.31852 (19)0.56986 (10)0.0572 (5)
C60.68054 (11)0.44920 (19)0.60540 (10)0.0609 (5)
H6A0.70400.52740.58670.073*
C70.65069 (11)0.4618 (2)0.66361 (10)0.0600 (5)
C80.61518 (13)0.3357 (2)0.69326 (10)0.0667 (5)
H8A0.57630.36680.72320.080*
H8B0.65320.28520.71810.080*
C90.58026 (11)0.23520 (19)0.64523 (10)0.0592 (5)
H9A0.57590.14350.66710.071*
C100.50212 (11)0.27746 (17)0.62632 (9)0.0559 (5)
C110.44170 (12)0.2002 (2)0.64594 (11)0.0684 (6)
H11A0.44990.11950.67090.082*
C120.37006 (13)0.2363 (2)0.63060 (12)0.0770 (6)
H12A0.32930.18130.64430.092*
C130.35890 (12)0.3530 (2)0.59515 (11)0.0690 (6)
C140.41611 (13)0.4322 (2)0.57387 (12)0.0748 (6)
H14A0.40700.51260.54900.090*
C150.48779 (12)0.3937 (2)0.58902 (11)0.0715 (6)
H15A0.52810.44760.57370.086*
C160.65610 (11)0.5913 (2)0.70079 (11)0.0648 (5)
C170.66870 (14)0.7180 (2)0.67350 (13)0.0781 (6)
H17A0.67530.72260.62880.094*
C180.67220 (15)0.8387 (3)0.70790 (17)0.0898 (8)
H18A0.67900.92560.68740.108*
C190.66577 (16)0.8309 (3)0.77206 (18)0.0979 (9)
C200.6589 (2)0.7078 (3)0.80307 (16)0.1065 (10)
H20A0.65800.70390.84810.128*
C210.65327 (18)0.5888 (3)0.76701 (13)0.0934 (8)
H21A0.64730.50230.78790.112*
U11U22U33U12U13U23
F10.0684 (8)0.0980 (10)0.1224 (13)0.0017 (7)−0.0188 (8)−0.0061 (8)
F20.1599 (17)0.0981 (12)0.175 (2)−0.0024 (11)0.0216 (15)−0.0716 (13)
O10.0700 (8)0.0498 (7)0.0838 (10)−0.0096 (6)0.0083 (7)−0.0045 (6)
O20.0641 (8)0.0553 (7)0.0891 (11)0.0019 (6)0.0118 (8)−0.0099 (7)
N10.0711 (11)0.0588 (10)0.0776 (13)−0.0125 (8)0.0186 (10)−0.0101 (9)
C10.0954 (18)0.0609 (12)0.123 (2)−0.0220 (12)0.0001 (16)0.0023 (13)
C20.0793 (14)0.0475 (10)0.0970 (17)−0.0052 (9)−0.0028 (12)−0.0052 (10)
C30.0523 (9)0.0474 (9)0.0737 (13)0.0016 (7)−0.0012 (10)0.0031 (8)
C40.0568 (10)0.0500 (9)0.0646 (12)−0.0010 (8)0.0013 (9)0.0002 (8)
C50.0565 (10)0.0524 (9)0.0627 (12)−0.0008 (8)0.0039 (9)−0.0009 (8)
C60.0622 (11)0.0510 (9)0.0696 (13)−0.0085 (8)0.0040 (10)−0.0006 (8)
C70.0620 (11)0.0568 (10)0.0613 (12)−0.0023 (8)−0.0005 (9)−0.0001 (8)
C80.0737 (13)0.0658 (11)0.0607 (12)−0.0078 (9)0.0050 (10)0.0020 (9)
C90.0644 (11)0.0490 (9)0.0642 (12)−0.0044 (8)0.0068 (9)0.0062 (8)
C100.0627 (11)0.0452 (8)0.0598 (11)−0.0051 (8)0.0086 (9)−0.0033 (7)
C110.0690 (12)0.0577 (11)0.0784 (14)−0.0072 (9)0.0090 (11)0.0090 (9)
C120.0653 (12)0.0725 (13)0.0932 (17)−0.0160 (10)0.0096 (12)0.0049 (12)
C130.0622 (12)0.0663 (12)0.0786 (14)0.0002 (9)−0.0066 (11)−0.0128 (10)
C140.0780 (14)0.0578 (11)0.0886 (16)−0.0029 (10)−0.0080 (12)0.0086 (10)
C150.0680 (13)0.0568 (11)0.0897 (16)−0.0090 (9)0.0015 (11)0.0141 (10)
C160.0651 (11)0.0623 (11)0.0671 (13)0.0023 (9)0.0036 (10)−0.0047 (9)
C170.0852 (15)0.0661 (13)0.0831 (16)−0.0069 (10)0.0037 (12)−0.0076 (11)
C180.0873 (17)0.0642 (13)0.118 (2)−0.0003 (11)0.0098 (16)−0.0136 (14)
C190.0881 (18)0.0780 (16)0.128 (3)0.0035 (13)0.0108 (16)−0.0422 (16)
C200.129 (3)0.098 (2)0.092 (2)0.0000 (17)0.0041 (18)−0.0281 (16)
C210.119 (2)0.0792 (15)0.0816 (18)−0.0014 (14)0.0062 (15)−0.0085 (13)
F1—C131.360 (2)C8—H8B0.9900
F2—C191.355 (3)C9—C101.519 (3)
O1—C31.350 (2)C9—H9A1.0000
O1—C21.445 (2)C10—C111.382 (3)
O2—C31.230 (2)C10—C151.393 (3)
N1—C51.348 (3)C11—C121.375 (3)
N1—H1B0.86 (3)C11—H11A0.9500
N1—H1A0.88 (2)C12—C131.366 (3)
C1—C21.491 (3)C12—H12A0.9500
C1—H1C0.9800C13—C141.359 (3)
C1—H1D0.9800C14—C151.381 (3)
C1—H1E0.9800C14—H14A0.9500
C2—H2A0.9900C15—H15A0.9500
C2—H2B0.9900C16—C171.369 (3)
C3—C41.438 (3)C16—C211.397 (4)
C4—C51.376 (3)C17—C181.372 (3)
C4—C91.518 (3)C17—H17A0.9500
C5—C61.466 (3)C18—C191.359 (5)
C6—C71.345 (3)C18—H18A0.9500
C6—H6A0.9500C19—C201.360 (4)
C7—C161.478 (3)C20—C211.379 (4)
C7—C81.508 (3)C20—H20A0.9500
C8—C91.536 (3)C21—H21A0.9500
C8—H8A0.9900
C3—O1—C2117.35 (16)C4—C9—H9A106.6
C5—N1—H1B121.5 (15)C10—C9—H9A106.6
C5—N1—H1A118.0 (15)C8—C9—H9A106.6
H1B—N1—H1A120 (2)C11—C10—C15117.13 (19)
C2—C1—H1C109.5C11—C10—C9120.48 (17)
C2—C1—H1D109.5C15—C10—C9122.39 (17)
H1C—C1—H1D109.5C12—C11—C10122.20 (19)
C2—C1—H1E109.5C12—C11—H11A118.9
H1C—C1—H1E109.5C10—C11—H11A118.9
H1D—C1—H1E109.5C13—C12—C11118.4 (2)
O1—C2—C1106.7 (2)C13—C12—H12A120.8
O1—C2—H2A110.4C11—C12—H12A120.8
C1—C2—H2A110.4C14—C13—F1119.0 (2)
O1—C2—H2B110.4C14—C13—C12122.1 (2)
C1—C2—H2B110.4F1—C13—C12118.9 (2)
H2A—C2—H2B108.6C13—C14—C15118.8 (2)
O2—C3—O1120.91 (17)C13—C14—H14A120.6
O2—C3—C4126.45 (17)C15—C14—H14A120.6
O1—C3—C4112.64 (17)C14—C15—C10121.3 (2)
C5—C4—C3120.69 (18)C14—C15—H15A119.3
C5—C4—C9119.73 (17)C10—C15—H15A119.3
C3—C4—C9119.46 (16)C17—C16—C21116.2 (2)
N1—C5—C4124.37 (18)C17—C16—C7122.8 (2)
N1—C5—C6115.42 (17)C21—C16—C7120.8 (2)
C4—C5—C6120.21 (18)C16—C17—C18122.8 (3)
C7—C6—C5122.06 (17)C16—C17—H17A118.6
C7—C6—H6A119.0C18—C17—H17A118.6
C5—C6—H6A119.0C19—C18—C17118.3 (3)
C6—C7—C16122.23 (18)C19—C18—H18A120.8
C6—C7—C8118.36 (18)C17—C18—H18A120.8
C16—C7—C8119.27 (18)F2—C19—C18118.8 (3)
C7—C8—C9114.13 (17)F2—C19—C20118.9 (3)
C7—C8—H8A108.7C18—C19—C20122.3 (2)
C9—C8—H8A108.7C19—C20—C21117.9 (3)
C7—C8—H8B108.7C19—C20—H20A121.1
C9—C8—H8B108.7C21—C20—H20A121.1
H8A—C8—H8B107.6C20—C21—C16122.2 (3)
C4—C9—C10113.29 (17)C20—C21—H21A118.9
C4—C9—C8110.75 (16)C16—C21—H21A118.9
C10—C9—C8112.54 (17)
C3—O1—C2—C1−178.43 (19)C8—C9—C10—C1570.1 (2)
C2—O1—C3—O2−4.5 (3)C15—C10—C11—C12−1.0 (3)
C2—O1—C3—C4175.00 (17)C9—C10—C11—C12179.0 (2)
O2—C3—C4—C55.9 (3)C10—C11—C12—C13−0.5 (4)
O1—C3—C4—C5−173.59 (18)C11—C12—C13—C141.2 (4)
O2—C3—C4—C9−177.93 (19)C11—C12—C13—F1−178.6 (2)
O1—C3—C4—C92.6 (3)F1—C13—C14—C15179.4 (2)
C3—C4—C5—N1−0.6 (3)C12—C13—C14—C15−0.5 (4)
C9—C4—C5—N1−176.69 (19)C13—C14—C15—C10−1.1 (4)
C3—C4—C5—C6178.74 (18)C11—C10—C15—C141.8 (3)
C9—C4—C5—C62.6 (3)C9—C10—C15—C14−178.2 (2)
N1—C5—C6—C7−166.7 (2)C6—C7—C16—C1722.1 (3)
C4—C5—C6—C714.0 (3)C8—C7—C16—C17−162.2 (2)
C5—C6—C7—C16177.17 (19)C6—C7—C16—C21−153.7 (2)
C5—C6—C7—C81.4 (3)C8—C7—C16—C2122.1 (3)
C6—C7—C8—C9−31.0 (3)C21—C16—C17—C18−5.4 (4)
C16—C7—C8—C9153.08 (18)C7—C16—C17—C18178.6 (2)
C5—C4—C9—C1096.8 (2)C16—C17—C18—C192.7 (4)
C3—C4—C9—C10−79.4 (2)C17—C18—C19—F2−179.8 (2)
C5—C4—C9—C8−30.7 (3)C17—C18—C19—C202.6 (5)
C3—C4—C9—C8153.10 (17)F2—C19—C20—C21177.8 (3)
C7—C8—C9—C443.9 (2)C18—C19—C20—C21−4.5 (5)
C7—C8—C9—C10−84.0 (2)C19—C20—C21—C161.5 (5)
C4—C9—C10—C11123.5 (2)C17—C16—C21—C203.3 (4)
C8—C9—C10—C11−109.9 (2)C7—C16—C21—C20179.4 (3)
C4—C9—C10—C15−56.5 (2)
D—H···AD—HH···AD···AD—H···A
N1—H1B···O2i0.86 (3)2.23 (3)3.066 (2)165 (2)
N1—H1A···O20.88 (2)2.06 (2)2.708 (2)130.3 (19)
N1—H1A···F1ii0.88 (2)2.37 (2)3.104 (2)141.9 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1B⋯O2i0.86 (3)2.23 (3)3.066 (2)165 (2)
N1—H1A⋯O20.88 (2)2.06 (2)2.708 (2)130.3 (19)
N1—H1A⋯F1ii0.88 (2)2.37 (2)3.104 (2)141.9 (19)

Symmetry codes: (i) ; (ii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-[3,5-Bis(4-fluoro-phen-yl)-4,5-dihydro-1H-pyrazol-1-yl]ethanone.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-10

3.  Methyl 4,6-bis-(4-fluoro-phen-yl)-2-oxo-cyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Hoong-Kun Fun; Madhukar Hemamalini; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-03-17

4.  (1RS,6SR)-Ethyl 4,6-bis-(4-fluoro-phen-yl)-2-oxocyclo-hex-3-ene-1-carboxyl-ate.

Authors:  Grzegorz Dutkiewicz; B Narayana; K Veena; H S Yathirajan; Maciej Kubicki
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-12

5.  2,3-Dibromo-1,3-bis-(4-fluoro-phen-yl)propan-1-one.

Authors:  Jerry P Jasinski; Curtis J Guild; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-14

6.  3,5-Bis(4-fluoro-phen-yl)-1-phenyl-4,5-dihydro-1H-pyrazole.

Authors:  Jerry P Jasinski; Curtis J Guild; S Samshuddin; B Narayana; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-07
  6 in total
  1 in total

1.  Ethyl 2-amino-6-(4-bromo-phen-yl)-4-(4-fluoro-phen-yl)cyclo-hexa-1,3-diene-1-carboxyl-ate.

Authors:  B Narayana; M Sapnakumari; Jerry P Jasinski; Peter M Fraiser; H S Yathirajan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-23
  1 in total

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