Literature DB >> 21200798

Piperazinediium bis-(2-carboxy-pyridine-3-carboxyl-ate).

Hossein Aghabozorg, Faranak Manteghi, Mohammad Ghadermazi.   

Abstract

The asymmetric unit of the title salt, C(4)H(12)N(2) (2+)·2C(7)H(4)NO(4) (-) or pipzH(2) (2+)·2(py-2,3-dcH(-)), prepared by a reaction between pyridine-2,3-dicarboxylic acid (py-2,3-dcH(2)) and piperazine (pipz), contains a monoanion and half of a centrosymmetric dication. The anionic fragment individually has two intra-molecular hydrogen bonds, an almost linear O-H⋯O bond between two carboxyl-ate groups and a C-H⋯O bond between the aromatic ring and carboxyl-ate group. Other O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds are responsible for three-dimensional expansion of the structure.

Entities:  

Year:  2007        PMID: 21200798      PMCID: PMC2915291          DOI: 10.1107/S1600536807065002

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related literature, see: Aghabozorg et al. (2006 ▶); Aghabozorg, Daneshvar et al. (2007 ▶); Aghabozorg, Sadr-khanlou et al. (2007 ▶); Khalil & Attia (1999 ▶); Manteghi et al. (2007 ▶).

Experimental

Crystal data

C4H12N2 2+·2C7H4NO4 − M = 420.38 Monoclinic, a = 8.0116 (6) Å b = 11.0588 (9) Å c = 10.4621 (7) Å β = 106.574 (2)° V = 888.42 (11) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 100 (2) K 0.20 × 0.15 × 0.15 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: none 6962 measured reflections 2341 independent reflections 2104 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.084 S = 1.03 2341 reflections 136 parameters H-atom parameters constrained Δρmax = 0.43 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: APEX2; data reduction: APEX2; program(s) used to solve structure: SHELXTL (Sheldrick, 1998 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL and Mercury (Version 1.4.2; Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536807065002/om2187sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536807065002/om2187Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2C7H4NO4F(000) = 440
Mr = 420.38Dx = 1.571 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2095 reflections
a = 8.0116 (6) Åθ = 2.7–28.6°
b = 11.0588 (9) ŵ = 0.13 mm1
c = 10.4621 (7) ÅT = 100 K
β = 106.574 (2)°Prism, colourless
V = 888.42 (11) Å30.20 × 0.15 × 0.15 mm
Z = 2
Bruker SMART APEXII diffractometer2104 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.015
graphiteθmax = 29.0°, θmin = 2.7°
φ and ω scansh = −10→10
6962 measured reflectionsk = −15→15
2341 independent reflectionsl = −14→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: mixed
wR(F2) = 0.084H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.035P)2 + 0.450P] where P = (Fo2 + 2Fc2)/3
2341 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.43 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.88615 (11)0.17340 (7)0.51531 (8)0.02036 (18)
O20.98274 (10)0.08122 (7)0.70930 (8)0.02041 (18)
O30.72179 (11)0.13267 (7)0.28657 (8)0.02033 (18)
H3O0.78420.14670.36570.030*
O40.54664 (10)−0.00934 (8)0.17740 (8)0.02126 (18)
N10.77161 (11)−0.10247 (8)0.63974 (9)0.01409 (18)
N20.98062 (11)0.40793 (8)0.59237 (8)0.01352 (17)
H2A1.00470.44410.67260.016*
H2B0.95550.33000.60360.016*
C10.76624 (12)−0.02324 (8)0.54104 (10)0.01174 (18)
C20.65530 (12)−0.04141 (9)0.41030 (10)0.01209 (19)
C30.54476 (13)−0.14260 (9)0.39063 (10)0.0147 (2)
H3A0.4655−0.15650.30520.018*
C40.54919 (13)−0.22223 (9)0.49329 (11)0.0161 (2)
H4A0.4736−0.29020.48020.019*
C50.66802 (14)−0.19939 (9)0.61616 (10)0.0160 (2)
H5A0.6760−0.25520.68670.019*
C60.88903 (13)0.08412 (9)0.59330 (10)0.01317 (19)
C70.63871 (13)0.03075 (9)0.28268 (10)0.01448 (19)
C81.13286 (13)0.40868 (9)0.53727 (10)0.0146 (2)
H8A1.10670.35800.45600.018*
H8B1.23530.37360.60360.018*
C90.82508 (13)0.46401 (9)0.49653 (10)0.0147 (2)
H9A0.72700.46590.53650.018*
H9B0.78920.41490.41410.018*
U11U22U33U12U13U23
O10.0283 (4)0.0139 (3)0.0167 (4)−0.0056 (3)0.0029 (3)0.0024 (3)
O20.0234 (4)0.0200 (4)0.0146 (4)−0.0074 (3)0.0003 (3)0.0013 (3)
O30.0268 (4)0.0184 (4)0.0135 (3)−0.0025 (3)0.0021 (3)0.0034 (3)
O40.0197 (4)0.0294 (4)0.0129 (4)−0.0027 (3)0.0019 (3)0.0005 (3)
N10.0165 (4)0.0130 (4)0.0133 (4)0.0001 (3)0.0051 (3)0.0006 (3)
N20.0147 (4)0.0136 (4)0.0120 (4)−0.0018 (3)0.0033 (3)0.0006 (3)
C10.0120 (4)0.0110 (4)0.0129 (4)0.0007 (3)0.0047 (3)−0.0008 (3)
C20.0119 (4)0.0128 (4)0.0123 (4)0.0023 (3)0.0047 (3)−0.0005 (3)
C30.0124 (4)0.0162 (4)0.0158 (5)0.0002 (3)0.0044 (4)−0.0040 (4)
C40.0160 (4)0.0131 (4)0.0209 (5)−0.0022 (3)0.0082 (4)−0.0034 (4)
C50.0202 (5)0.0125 (4)0.0171 (5)−0.0004 (4)0.0084 (4)0.0011 (4)
C60.0136 (4)0.0123 (4)0.0145 (4)−0.0005 (3)0.0054 (3)−0.0009 (3)
C70.0130 (4)0.0181 (5)0.0128 (4)0.0035 (3)0.0044 (3)0.0017 (4)
C80.0143 (4)0.0156 (4)0.0143 (4)0.0032 (3)0.0046 (4)0.0000 (3)
C90.0113 (4)0.0181 (5)0.0138 (4)−0.0013 (3)0.0023 (3)0.0003 (4)
O1—C61.2769 (12)C2—C31.4053 (14)
O2—C61.2319 (12)C2—C71.5284 (14)
O3—C71.3036 (13)C3—C41.3815 (15)
O3—H3O0.8501C3—H3A0.9500
O4—C71.2209 (13)C4—C51.3872 (15)
N1—C51.3348 (13)C4—H4A0.9500
N1—C11.3456 (12)C5—H5A0.9500
N2—C81.4903 (13)C8—C9i1.5129 (14)
N2—C91.4933 (13)C8—H8A0.9900
N2—H2A0.9000C8—H8B0.9900
N2—H2B0.9000C9—C8i1.5129 (14)
C1—C21.4169 (13)C9—H9A0.9900
C1—C61.5394 (13)C9—H9B0.9900
C7—O3—H3O110.0N1—C5—H5A118.5
C5—N1—C1119.93 (9)C4—C5—H5A118.5
C8—N2—C9110.87 (7)O2—C6—O1122.99 (9)
C8—N2—H2A112.1O2—C6—C1118.55 (9)
C9—N2—H2A110.9O1—C6—C1118.44 (9)
C8—N2—H2B107.1O4—C7—O3120.92 (9)
C9—N2—H2B108.1O4—C7—C2118.56 (9)
H2A—N2—H2B107.5O3—C7—C2120.51 (9)
N1—C1—C2121.50 (9)N2—C8—C9i110.92 (8)
N1—C1—C6110.63 (8)N2—C8—H8A109.5
C2—C1—C6127.85 (9)C9i—C8—H8A109.5
C3—C2—C1116.74 (9)N2—C8—H8B109.5
C3—C2—C7113.19 (8)C9i—C8—H8B109.5
C1—C2—C7130.06 (9)H8A—C8—H8B108.0
C4—C3—C2121.22 (9)N2—C9—C8i110.15 (8)
C4—C3—H3A119.4N2—C9—H9A109.6
C2—C3—H3A119.4C8i—C9—H9A109.6
C3—C4—C5117.58 (9)N2—C9—H9B109.6
C3—C4—H4A121.2C8i—C9—H9B109.6
C5—C4—H4A121.2H9A—C9—H9B108.1
N1—C5—C4122.94 (9)
C5—N1—C1—C2−1.52 (14)N1—C1—C6—O25.34 (13)
C5—N1—C1—C6176.91 (9)C2—C1—C6—O2−176.36 (10)
N1—C1—C2—C33.28 (14)N1—C1—C6—O1−173.07 (9)
C6—C1—C2—C3−174.85 (9)C2—C1—C6—O15.23 (15)
N1—C1—C2—C7−174.82 (9)C3—C2—C7—O4−6.01 (13)
C6—C1—C2—C77.04 (16)C1—C2—C7—O4172.15 (10)
C1—C2—C3—C4−2.13 (14)C3—C2—C7—O3174.22 (9)
C7—C2—C3—C4176.30 (9)C1—C2—C7—O3−7.62 (16)
C2—C3—C4—C5−0.66 (15)C9—N2—C8—C9i57.28 (11)
C1—N1—C5—C4−1.56 (15)C8—N2—C9—C8i−56.84 (11)
C3—C4—C5—N12.64 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3O···O10.851.572.4219 (11)175
N2—H2A···O2ii0.901.942.7778 (12)154
N2—H2B···O10.901.972.7571 (11)146
C3—H3A···O40.952.312.6773 (13)102
C8—H8A···O2iii0.992.583.2982 (13)130
C9—H9A···O4iv0.992.393.3491 (14)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3O⋯O10.851.572.4219 (11)175
N2—H2A⋯O2i0.901.942.7778 (12)154
N2—H2B⋯O10.901.972.7571 (11)146
C3—H3A⋯O40.952.312.6773 (13)102
C8—H8A⋯O2ii0.992.583.2982 (13)130
C9—H9A⋯O4iii0.992.393.3491 (14)163

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  4,4'-Bipyridinium bis-(2-carboxy-pyridine-3-carboxyl-ate).

Authors:  Janet Soleimannejad; Hossein Aghabozorg; Ali Morsali; Foruzan Hemmati; Faranak Manteghi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-12-17

2.  2,2'-Azanediyl-diethanaminium pyridine-2,5-dicarboxyl-ate.

Authors:  Hossein Aghabozorg; Maryam Saemi; Zeynab Khazaei; Vahid Amani; Behrouz Notash
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  Piperazine-1,4-diium pyridine-2,3-dicarboxyl-ate methanol monosolvate.

Authors:  Faranak Manteghi; Mohammad Ghadermazi; Nasrin Kakaei
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-04-13
  3 in total

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