Literature DB >> 21522964

(1S,4S)-2-(2,4-Difluoro-phen-yl)-5-[(4-methyl-phen-yl)sulfon-yl]-2,5-diaza-bicyclo-[2.2.1]hepta-ne.

Chunli Wu, Jingyu Zhang, Pan Li, Junxia Zhang, Jizhou Wu.   

Abstract

In the title mol-ecule, C(18)H(18)F(2)N(2)O(2)S, the two benzene rings, which are oriented in opposite directions with respect to the rigid 2,5-diaza-bicyclo-[2.2.1]heptane core, form a dihedral angle of 17.2 (1)°. Weak inter-molecular C-H⋯O, C-H⋯F and C-H⋯N contacts consolidate the crystal packing.

Entities:  

Year:  2011        PMID: 21522964      PMCID: PMC3051594          DOI: 10.1107/S1600536810054541

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For details of the synthesis, see: Portoghese et al. (1966 ▶); Braish & Fox (1990 ▶); Ulrich et al. (1990 ▶). For a recent study of the biological activity of 2,5-diaza­bicyclo­[2.2.1]heptane deriv­atives, see: Li et al. (2010 ▶).

Experimental

Crystal data

C18H18F2N2O2S M = 364.40 Monoclinic, a = 9.9615 (11) Å b = 7.6586 (8) Å c = 11.3461 (14) Å β = 98.979 (1)° V = 855.00 (17) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 298 K 0.38 × 0.33 × 0.15 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.920, T max = 0.967 4425 measured reflections 2891 independent reflections 2045 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.103 S = 1.00 2891 reflections 227 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.28 e Å−3 Absolute structure: Flack (1983 ▶), 1569 Friedel pairs Flack parameter: 0.00 (10) Data collection: SMART (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810054541/cv5024sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810054541/cv5024Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H18F2N2O2SF(000) = 380
Mr = 364.40Dx = 1.415 Mg m3
Monoclinic, P21Melting point = 460–465 K
Hall symbol: P 2ybMo Kα radiation, λ = 0.71073 Å
a = 9.9615 (11) ÅCell parameters from 1315 reflections
b = 7.6586 (8) Åθ = 3.0–20.7°
c = 11.3461 (14) ŵ = 0.22 mm1
β = 98.979 (1)°T = 298 K
V = 855.00 (17) Å3Block, colourless
Z = 20.38 × 0.33 × 0.15 mm
Bruker SMART CCD area-detector diffractometer2891 independent reflections
Radiation source: fine-focus sealed tube2045 reflections with I > 2σ(I)
graphiteRint = 0.028
phi and ω scansθmax = 25.0°, θmin = 2.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→11
Tmin = 0.920, Tmax = 0.967k = −9→8
4425 measured reflectionsl = −11→13
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.103w = 1/[σ2(Fo2) + (0.0457P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
2891 reflectionsΔρmax = 0.17 e Å3
227 parametersΔρmin = −0.28 e Å3
1 restraintAbsolute structure: Flack (1983), 1569 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.00 (10)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.4098 (2)0.6800 (3)−0.03940 (17)0.0765 (8)
F20.8825 (2)0.6799 (4)0.0177 (2)0.1001 (9)
N10.2867 (3)0.7976 (4)0.3031 (2)0.0461 (8)
N20.4040 (3)0.5378 (4)0.1917 (2)0.0433 (7)
O10.2878 (3)0.9129 (4)0.5023 (2)0.0763 (10)
O20.2841 (2)1.1122 (3)0.3288 (3)0.0727 (9)
S10.24048 (8)0.95563 (13)0.38078 (9)0.0536 (3)
C10.2683 (4)0.8049 (5)0.1708 (3)0.0542 (10)
H1A0.34210.86650.14250.065*
H1B0.18240.85830.13750.065*
C20.2704 (3)0.6110 (5)0.1432 (3)0.0521 (10)
H20.23840.58150.05950.063*
C30.4094 (3)0.5309 (5)0.3233 (3)0.0469 (9)
H3A0.48510.59810.36430.056*
H3B0.41580.41170.35250.056*
C40.2756 (3)0.6122 (5)0.3370 (3)0.0501 (9)
H40.24540.59210.41400.060*
C50.1836 (4)0.5390 (6)0.2296 (3)0.0607 (10)
H5A0.17930.41250.22930.073*
H5B0.09280.58850.21880.073*
C60.0621 (3)0.9624 (5)0.3636 (3)0.0417 (8)
C7−0.0068 (4)0.8662 (5)0.4375 (3)0.0516 (9)
H70.04080.79620.49680.062*
C8−0.1472 (4)0.8740 (5)0.4234 (3)0.0552 (10)
H8−0.19310.80590.47200.066*
C9−0.2197 (3)0.9795 (5)0.3395 (3)0.0512 (9)
C10−0.1492 (4)1.0745 (5)0.2650 (3)0.0556 (10)
H10−0.19711.14520.20630.067*
C11−0.0098 (4)1.0664 (5)0.2761 (3)0.0528 (10)
H110.03581.13060.22500.063*
C12−0.3720 (3)0.9925 (7)0.3276 (4)0.0750 (13)
H12A−0.41280.93660.25500.112*
H12B−0.39831.11320.32580.112*
H12C−0.40210.93600.39440.112*
C130.5230 (3)0.5761 (4)0.1463 (3)0.0415 (9)
C140.5274 (4)0.6452 (5)0.0333 (3)0.0494 (9)
C150.6459 (4)0.6818 (5)−0.0094 (3)0.0578 (11)
H150.64430.7309−0.08450.069*
C160.7645 (4)0.6445 (6)0.0606 (4)0.0609 (11)
C170.7683 (4)0.5735 (6)0.1699 (4)0.0633 (12)
H170.85140.54730.21620.076*
C180.6496 (4)0.5398 (5)0.2126 (3)0.0518 (9)
H180.65370.49130.28820.062*
U11U22U33U12U13U23
F10.0681 (16)0.109 (2)0.0488 (13)0.0138 (14)−0.0023 (11)0.0168 (13)
F20.0703 (17)0.134 (3)0.104 (2)−0.0124 (16)0.0408 (14)0.0063 (17)
N10.0493 (18)0.0448 (19)0.0458 (18)0.0052 (16)0.0121 (14)0.0034 (15)
N20.0394 (16)0.0426 (17)0.0466 (17)0.0031 (13)0.0027 (13)−0.0024 (14)
O10.0636 (18)0.099 (3)0.0592 (17)0.0166 (16)−0.0120 (13)−0.0166 (16)
O20.0501 (17)0.0422 (17)0.128 (2)−0.0106 (14)0.0201 (16)−0.0099 (17)
S10.0412 (5)0.0511 (6)0.0669 (7)−0.0008 (5)0.0035 (4)−0.0114 (5)
C10.049 (2)0.056 (3)0.056 (2)0.015 (2)0.0062 (18)0.012 (2)
C20.046 (2)0.057 (3)0.049 (2)−0.0056 (19)−0.0040 (17)−0.0054 (19)
C30.052 (2)0.043 (2)0.046 (2)0.0041 (17)0.0080 (17)0.0080 (16)
C40.051 (2)0.046 (2)0.056 (2)0.0032 (18)0.0165 (18)0.0146 (18)
C50.041 (2)0.056 (2)0.083 (3)−0.0127 (18)0.004 (2)0.002 (2)
C60.0401 (18)0.0419 (19)0.0434 (18)−0.001 (2)0.0075 (15)−0.006 (2)
C70.056 (2)0.046 (2)0.053 (2)0.0065 (19)0.0103 (18)0.0060 (19)
C80.053 (2)0.051 (2)0.065 (3)−0.0021 (19)0.019 (2)0.002 (2)
C90.0420 (19)0.053 (3)0.058 (2)−0.005 (2)0.0054 (17)−0.011 (2)
C100.042 (2)0.063 (3)0.060 (2)0.000 (2)0.0004 (18)0.006 (2)
C110.054 (2)0.053 (3)0.051 (2)−0.0060 (19)0.0105 (19)0.0052 (19)
C120.046 (2)0.083 (3)0.096 (3)−0.009 (2)0.010 (2)−0.014 (3)
C130.044 (2)0.038 (2)0.042 (2)0.0035 (16)0.0062 (16)−0.0026 (16)
C140.055 (2)0.043 (2)0.047 (2)0.0085 (19)−0.0013 (18)−0.0001 (19)
C150.071 (3)0.054 (3)0.051 (2)−0.001 (2)0.021 (2)0.0008 (19)
C160.051 (3)0.063 (3)0.073 (3)−0.002 (2)0.023 (2)−0.004 (2)
C170.041 (2)0.084 (3)0.064 (3)0.003 (2)0.0040 (19)0.000 (2)
C180.050 (2)0.059 (2)0.047 (2)0.0077 (19)0.0060 (17)0.0014 (18)
F1—C141.350 (4)C6—C71.378 (4)
F2—C161.367 (4)C6—C111.382 (5)
N1—C41.480 (4)C7—C81.383 (5)
N1—C11.485 (4)C7—H70.9300
N1—S11.606 (3)C8—C91.366 (5)
N2—C131.395 (4)C8—H80.9300
N2—C21.470 (4)C9—C101.387 (5)
N2—C31.486 (4)C9—C121.506 (4)
O1—S11.424 (3)C10—C111.376 (5)
O2—S11.434 (3)C10—H100.9300
S1—C61.758 (3)C11—H110.9300
C1—C21.518 (5)C12—H12A0.9600
C1—H1A0.9700C12—H12B0.9600
C1—H1B0.9700C12—H12C0.9600
C2—C51.509 (5)C13—C181.391 (5)
C2—H20.9800C13—C141.394 (4)
C3—C41.501 (4)C14—C151.372 (5)
C3—H3A0.9700C15—C161.348 (5)
C3—H3B0.9700C15—H150.9300
C4—C51.514 (5)C16—C171.349 (5)
C4—H40.9800C17—C181.371 (5)
C5—H5A0.9700C17—H170.9300
C5—H5B0.9700C18—H180.9300
C4—N1—C1107.2 (3)C7—C6—C11119.6 (3)
C4—N1—S1122.8 (2)C7—C6—S1120.5 (3)
C1—N1—S1121.7 (2)C11—C6—S1119.9 (3)
C13—N2—C2123.6 (3)C6—C7—C8119.8 (3)
C13—N2—C3118.6 (3)C6—C7—H7120.1
C2—N2—C3106.1 (3)C8—C7—H7120.1
O1—S1—O2120.99 (18)C9—C8—C7121.4 (3)
O1—S1—N1106.15 (17)C9—C8—H8119.3
O2—S1—N1105.85 (14)C7—C8—H8119.3
O1—S1—C6106.89 (15)C8—C9—C10118.2 (3)
O2—S1—C6107.21 (17)C8—C9—C12121.2 (4)
N1—S1—C6109.44 (16)C10—C9—C12120.6 (4)
N1—C1—C299.7 (3)C11—C10—C9121.4 (3)
N1—C1—H1A111.8C11—C10—H10119.3
C2—C1—H1A111.8C9—C10—H10119.3
N1—C1—H1B111.8C10—C11—C6119.6 (3)
C2—C1—H1B111.8C10—C11—H11120.2
H1A—C1—H1B109.6C6—C11—H11120.2
N2—C2—C5101.2 (3)C9—C12—H12A109.5
N2—C2—C1109.7 (3)C9—C12—H12B109.5
C5—C2—C1101.3 (3)H12A—C12—H12B109.5
N2—C2—H2114.4C9—C12—H12C109.5
C5—C2—H2114.4H12A—C12—H12C109.5
C1—C2—H2114.4H12B—C12—H12C109.5
N2—C3—C4101.3 (2)C18—C13—C14114.7 (3)
N2—C3—H3A111.5C18—C13—N2120.6 (3)
C4—C3—H3A111.5C14—C13—N2124.7 (3)
N2—C3—H3B111.5F1—C14—C15117.1 (3)
C4—C3—H3B111.5F1—C14—C13119.2 (3)
H3A—C3—H3B109.3C15—C14—C13123.6 (3)
N1—C4—C3105.5 (3)C16—C15—C14118.2 (3)
N1—C4—C5101.9 (3)C16—C15—H15120.9
C3—C4—C5101.5 (3)C14—C15—H15120.9
N1—C4—H4115.4C15—C16—C17121.6 (4)
C3—C4—H4115.4C15—C16—F2118.1 (4)
C5—C4—H4115.4C17—C16—F2120.3 (4)
C2—C5—C492.9 (3)C16—C17—C18119.9 (4)
C2—C5—H5A113.1C16—C17—H17120.0
C4—C5—H5A113.1C18—C17—H17120.0
C2—C5—H5B113.1C17—C18—C13122.0 (3)
C4—C5—H5B113.1C17—C18—H18119.0
H5A—C5—H5B110.5C13—C18—H18119.0
C4—N1—S1—O142.5 (3)O2—S1—C6—C1121.9 (3)
C1—N1—S1—O1−173.3 (3)N1—S1—C6—C11−92.5 (3)
C4—N1—S1—O2172.2 (3)C11—C6—C7—C80.2 (5)
C1—N1—S1—O2−43.5 (3)S1—C6—C7—C8179.5 (3)
C4—N1—S1—C6−72.6 (3)C6—C7—C8—C9−2.0 (5)
C1—N1—S1—C671.7 (3)C7—C8—C9—C102.5 (6)
C4—N1—C1—C2−8.7 (3)C7—C8—C9—C12−177.7 (4)
S1—N1—C1—C2−157.7 (2)C8—C9—C10—C11−1.3 (5)
C13—N2—C2—C5−175.9 (3)C12—C9—C10—C11178.9 (3)
C3—N2—C2—C5−33.6 (3)C9—C10—C11—C6−0.4 (5)
C13—N2—C2—C1−69.4 (4)C7—C6—C11—C100.9 (5)
C3—N2—C2—C172.9 (4)S1—C6—C11—C10−178.4 (3)
N1—C1—C2—N2−63.7 (3)C2—N2—C13—C18163.7 (3)
N1—C1—C2—C542.7 (3)C3—N2—C13—C1825.7 (5)
C13—N2—C3—C4141.8 (3)C2—N2—C13—C14−18.8 (5)
C2—N2—C3—C4−2.7 (3)C3—N2—C13—C14−156.8 (3)
C1—N1—C4—C377.7 (3)C18—C13—C14—F1178.0 (3)
S1—N1—C4—C3−133.7 (3)N2—C13—C14—F10.4 (5)
C1—N1—C4—C5−28.0 (3)C18—C13—C14—C15−2.4 (5)
S1—N1—C4—C5120.6 (3)N2—C13—C14—C15180.0 (3)
N2—C3—C4—N1−67.9 (3)F1—C14—C15—C16−178.5 (3)
N2—C3—C4—C538.0 (3)C13—C14—C15—C161.8 (6)
N2—C2—C5—C454.4 (3)C14—C15—C16—C17−0.1 (6)
C1—C2—C5—C4−58.5 (3)C14—C15—C16—F2179.6 (4)
N1—C4—C5—C251.9 (3)C15—C16—C17—C18−0.9 (6)
C3—C4—C5—C2−56.9 (3)F2—C16—C17—C18179.4 (4)
O1—S1—C6—C7−26.3 (3)C16—C17—C18—C130.2 (6)
O2—S1—C6—C7−157.4 (3)C14—C13—C18—C171.3 (5)
N1—S1—C6—C788.2 (3)N2—C13—C18—C17179.0 (3)
O1—S1—C6—C11153.0 (3)
D—H···AD—HH···AD···AD—H···A
C3—H3B···O2i0.972.633.445 (5)141
C5—H5A···O2i0.972.703.550 (5)147
C10—H10···F1ii0.932.633.445 (4)147
C18—H18···O1iii0.932.433.342 (5)166
C15—H15···N2iv0.932.663.412 (5)139
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C3—H3B⋯O2i0.972.633.445 (5)141
C5—H5A⋯O2i0.972.703.550 (5)147
C10—H10⋯F1ii0.932.633.445 (4)147
C18—H18⋯O1iii0.932.433.342 (5)166
C15—H15⋯N2iv0.932.663.412 (5)139

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Syntheses and structure-activity relationship (SAR) studies of 2,5-diazabicyclo[2.2.1]heptanes as novel alpha7 neuronal nicotinic receptor (NNR) ligands.

Authors:  Tao Li; William H Bunnelle; Keith B Ryther; David J Anderson; John Malysz; Rosalind Helfrich; Jens H Grønlien; Monika Håkerud; Dan Peters; Michael R Schrimpf; Murali Gopalakrishnan; Jianguo Ji
Journal:  Bioorg Med Chem Lett       Date:  2010-04-28       Impact factor: 2.823

  2 in total
  1 in total

1.  Crystal structure of (1S,4S)-2,5-diazo-niabi-cyclo[2.2.1]heptane dibromide.

Authors:  Sergey N Britvin; Andrey M Rumyantsev
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-11-17
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.