Literature DB >> 21522962

2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole monohydrate.

Guo-Bin Ren1, Ming-Huang Hong, Jia-Liang Zhong, Dong-Xu Yi, Le-Hui Xu.   

Abstract

The asymmetric unit of the title compound, C(16)H(14)F(3)N(3)OS·H(2)O, contains two independent mol-ecules (A and B) and two water mol-ecules, one of which is disordered over two positions in a 0.790 (8):0.210 (8) ratio. The mol-ecular conformations are close, the benzimidazole mean plane and pyridine ring forming dihedral angles of 1.8 (3) and 0.1 (2)° in mol-ecules A and B, respectively. The water mol-ecules are involved in formation of two independent hydrogen-bonded chains via N-H⋯O and O-H⋯N hydrogen bonds. Chains propagating along the a axis are formed by mol-ecule A and one independent water mol-ecule, while chains propagating along the b axis are formed by mol-ecule B and the other independent water mol-ecule. The crystal packing exhibits π-π inter-actions, as indicated by short distances of 3.607 (3) and 3.701 (3) Å between the centroids of the imidazole and pyridine rings of neighbouring mol-ecules.

Entities:  

Year:  2011        PMID: 21522962      PMCID: PMC3051707          DOI: 10.1107/S1600536810053730

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate in the synthesis of the anti-ulcer drug lansoprazole [systematic name (RS)-2-([3-methyl-4-(2,2,2-trifluoro­eth­oxy)pyridin-2-yl]methyl­sulfin­yl)-1H-benzo[d]imidazole], see: Del Rio et al. (2007 ▶); Reddy et al. (2008 ▶); Iwahi et al. (1991 ▶). For related structures, see: Swamy & Ravikumar (2007 ▶); Hakim Al-arique et al. (2010 ▶).

Experimental

Crystal data

C16H14F3N3OS·H2O M = 371.39 Triclinic, a = 7.3526 (1) Å b = 7.4702 (1) Å c = 30.6500 (3) Å α = 88.27° β = 87.79° γ = 89.13° V = 1681.27 (4) Å3 Z = 4 Cu Kα radiation μ = 2.15 mm−1 T = 296 K 0.28 × 0.12 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer 12461 measured reflections 5446 independent reflections 5282 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.117 S = 1.06 5446 reflections 462 parameters H-atom parameters constrained Δρmax = 0.41 e Å−3 Δρmin = −0.32 e Å−3 Data collection: SMART (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810053730/cv5015sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810053730/cv5015Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H14F3N3OS·H2OZ = 4
Mr = 371.39F(000) = 768
Triclinic, P1Dx = 1.467 Mg m3
Hall symbol: -P 1Cu Kα radiation, λ = 1.54178 Å
a = 7.3526 (1) ÅCell parameters from 9679 reflections
b = 7.4702 (1) Åθ = 5.8–67.1°
c = 30.6500 (3) ŵ = 2.15 mm1
α = 88.27°T = 296 K
β = 87.79°Prism, colourless
γ = 89.13°0.28 × 0.12 × 0.10 mm
V = 1681.27 (4) Å3
Bruker SMART APEX diffractometer5282 reflections with I > 2σ(I)
Radiation source: sealed tubeRint = 0.017
graphiteθmax = 67.4°, θmin = 4.3°
φ and ω scansh = −7→8
12461 measured reflectionsk = −8→8
5446 independent reflectionsl = −33→36
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.041H-atom parameters constrained
wR(F2) = 0.117w = 1/[σ2(Fo2) + (0.0671P)2 + 0.6061P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max = 0.001
5446 reflectionsΔρmax = 0.41 e Å3
462 parametersΔρmin = −0.32 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0062 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S1A0.20282 (6)0.80754 (6)0.034292 (14)0.04220 (15)
F1A−0.4248 (3)0.4400 (3)−0.22095 (6)0.1133 (7)
F2A−0.5441 (2)0.6396 (2)−0.18024 (5)0.0767 (4)
F3A−0.5417 (2)0.3690 (2)−0.15787 (6)0.0898 (5)
O1A−0.28512 (19)0.57155 (19)−0.11848 (4)0.0499 (3)
N1A−0.0279 (2)0.8860 (2)0.10435 (5)0.0449 (4)
N2A0.2693 (2)0.9203 (2)0.11406 (5)0.0419 (3)
H2AA0.38470.91960.10830.050*
N3A0.1655 (2)0.6976 (2)−0.04904 (5)0.0480 (4)
C1A0.1826 (3)0.9679 (2)0.15275 (6)0.0414 (4)
C2A0.2464 (3)1.0248 (3)0.19196 (7)0.0516 (5)
H2AB0.37021.03470.19640.062*
C3A0.1170 (3)1.0661 (3)0.22414 (7)0.0593 (6)
H3AA0.15461.10590.25080.071*
C4A−0.0675 (3)1.0495 (3)0.21770 (7)0.0615 (6)
H4AA−0.15071.08060.23990.074*
C5A−0.1308 (3)0.9882 (3)0.17920 (7)0.0568 (5)
H5AA−0.25470.97510.17540.068*
C6A−0.0026 (3)0.9463 (2)0.14626 (6)0.0432 (4)
C7A0.1375 (2)0.8745 (2)0.08674 (6)0.0390 (4)
C8A−0.0216 (2)0.7654 (2)0.01491 (6)0.0407 (4)
H8AA−0.07980.67260.03310.049*
H8AB−0.09610.87340.01670.049*
C9A−0.0052 (2)0.7070 (2)−0.03177 (6)0.0384 (4)
C10A0.1846 (3)0.6412 (3)−0.08980 (7)0.0543 (5)
H10A0.30190.6321−0.10210.065*
C11A0.0431 (3)0.5958 (3)−0.11481 (6)0.0504 (5)
H11A0.06380.5563−0.14310.061*
C12A−0.1325 (3)0.6103 (2)−0.09671 (6)0.0415 (4)
C13A−0.1595 (2)0.6663 (2)−0.05382 (6)0.0388 (4)
C14A−0.2595 (3)0.5145 (3)−0.16192 (6)0.0495 (5)
H14A−0.19140.4023−0.16240.059*
H14B−0.19210.6033−0.17940.059*
C15A−0.4423 (4)0.4908 (3)−0.17966 (7)0.0618 (6)
C16A−0.3470 (3)0.6790 (3)−0.03280 (7)0.0491 (5)
H16A−0.33890.7198−0.00350.074*
H16B−0.40210.5632−0.03210.074*
H16C−0.41980.7621−0.04940.074*
OA0.6171 (2)0.9501 (2)0.07662 (6)0.0674 (4)
HA10.71280.90710.08670.101*
HA20.63921.04470.06300.101*
S1B0.26211 (7)0.81787 (6)0.488240 (15)0.04885 (16)
F1B0.0052 (3)1.4472 (3)0.75578 (5)0.1092 (7)
F2B0.1852 (3)1.5488 (2)0.70486 (6)0.0992 (6)
F3B−0.0976 (3)1.5730 (2)0.69808 (6)0.1053 (6)
O1B0.0650 (2)1.30722 (19)0.64771 (4)0.0576 (4)
N1B0.3484 (2)1.0373 (2)0.41683 (5)0.0485 (4)
N2B0.3662 (3)0.7438 (2)0.40584 (5)0.0506 (4)
H2BA0.36050.63050.41140.061*
N3B0.1553 (3)0.8612 (2)0.57285 (6)0.0578 (5)
C1B0.4148 (3)0.8255 (3)0.36638 (6)0.0479 (4)
C2B0.4657 (3)0.7591 (3)0.32581 (7)0.0604 (6)
H2BB0.47330.63670.32120.072*
C3B0.5043 (3)0.8839 (4)0.29259 (7)0.0652 (6)
H3BA0.53860.84440.26490.078*
C4B0.4932 (3)1.0663 (4)0.29952 (7)0.0648 (6)
H4BA0.52051.14630.27650.078*
C5B0.4428 (3)1.1314 (3)0.33978 (7)0.0605 (6)
H5BA0.43541.25400.34420.073*
C6B0.4032 (3)1.0091 (3)0.37361 (6)0.0480 (4)
C7B0.3289 (3)0.8765 (3)0.43438 (6)0.0443 (4)
C8B0.2354 (3)1.0420 (3)0.50903 (6)0.0473 (4)
H8BA0.34981.10470.50580.057*
H8BB0.14501.10880.49270.057*
C9B0.1760 (3)1.0277 (3)0.55651 (6)0.0461 (4)
C10B0.1024 (4)0.8433 (3)0.61464 (7)0.0637 (6)
H10B0.08670.72800.62630.076*
C11B0.0695 (3)0.9845 (3)0.64178 (7)0.0562 (5)
H11B0.03270.96570.67090.067*
C12B0.0929 (3)1.1550 (3)0.62422 (6)0.0479 (4)
C13B0.1465 (3)1.1813 (3)0.58049 (6)0.0458 (4)
C14B0.0293 (3)1.2837 (3)0.69304 (6)0.0558 (5)
H14C0.12161.20650.70580.067*
H14D−0.08841.22880.69860.067*
C15B0.0308 (4)1.4636 (4)0.71260 (8)0.0706 (7)
C16B0.1682 (4)1.3666 (3)0.56065 (7)0.0620 (6)
H16D0.14121.45350.58250.093*
H16E0.08611.38360.53720.093*
H16F0.29111.38110.54950.093*
OB0.4154 (6)0.3918 (3)0.43764 (9)0.0886 (14)0.790 (8)
OB'0.251 (2)0.3984 (11)0.4323 (3)0.090 (5)0.210 (8)
HB10.35860.29710.43390.134*0.790 (8)
HB1'0.33610.32610.43120.134*0.210 (8)
HB20.51390.35490.44550.134*0.790 (8)
HB2'0.15810.33750.42720.134*0.210 (8)
U11U22U33U12U13U23
S1A0.0356 (3)0.0494 (3)0.0416 (3)−0.00072 (17)0.00079 (18)−0.00341 (18)
F1A0.0937 (13)0.179 (2)0.0719 (10)0.0062 (12)−0.0171 (9)−0.0662 (12)
F2A0.0676 (10)0.0855 (10)0.0770 (9)0.0115 (7)−0.0118 (7)0.0009 (7)
F3A0.0722 (11)0.0777 (10)0.1210 (14)−0.0239 (8)−0.0155 (9)−0.0013 (9)
O1A0.0464 (8)0.0642 (8)0.0394 (7)−0.0068 (6)0.0000 (6)−0.0081 (6)
N1A0.0361 (9)0.0526 (9)0.0458 (8)−0.0014 (6)−0.0003 (7)−0.0009 (7)
N2A0.0322 (8)0.0490 (8)0.0445 (8)−0.0006 (6)−0.0006 (6)−0.0029 (6)
N3A0.0378 (9)0.0584 (10)0.0476 (9)−0.0039 (7)0.0042 (7)−0.0056 (7)
C1A0.0427 (11)0.0390 (9)0.0423 (9)0.0002 (7)0.0001 (8)0.0014 (7)
C2A0.0512 (13)0.0535 (11)0.0506 (11)−0.0028 (9)−0.0058 (9)−0.0042 (9)
C3A0.0729 (16)0.0612 (13)0.0440 (11)−0.0026 (10)0.0011 (10)−0.0059 (9)
C4A0.0666 (16)0.0698 (14)0.0469 (11)0.0042 (11)0.0141 (10)−0.0032 (10)
C5A0.0449 (12)0.0698 (14)0.0547 (12)0.0005 (9)0.0086 (9)0.0013 (10)
C6A0.0416 (11)0.0453 (10)0.0424 (9)0.0005 (7)0.0013 (8)0.0016 (7)
C7A0.0359 (10)0.0379 (9)0.0431 (9)0.0007 (7)−0.0021 (7)0.0024 (7)
C8A0.0368 (10)0.0440 (9)0.0411 (9)−0.0010 (7)−0.0004 (7)−0.0010 (7)
C9A0.0375 (10)0.0368 (9)0.0404 (9)−0.0013 (7)0.0023 (7)0.0012 (7)
C10A0.0404 (11)0.0708 (13)0.0513 (11)−0.0056 (9)0.0109 (9)−0.0083 (9)
C11A0.0508 (12)0.0587 (12)0.0414 (10)−0.0043 (9)0.0089 (8)−0.0065 (8)
C12A0.0425 (11)0.0407 (9)0.0410 (9)−0.0049 (7)−0.0005 (8)0.0010 (7)
C13A0.0398 (10)0.0361 (9)0.0400 (9)−0.0011 (7)0.0036 (7)0.0010 (7)
C14A0.0578 (13)0.0492 (11)0.0416 (10)0.0000 (8)0.0010 (9)−0.0073 (8)
C15A0.0673 (15)0.0666 (14)0.0526 (12)0.0008 (11)−0.0056 (10)−0.0176 (10)
C16A0.0382 (11)0.0578 (11)0.0512 (11)−0.0022 (8)0.0025 (8)−0.0053 (9)
OA0.0362 (9)0.0880 (12)0.0770 (11)−0.0009 (7)0.0032 (7)0.0062 (9)
S1B0.0613 (3)0.0435 (3)0.0417 (3)−0.0018 (2)0.0023 (2)−0.00479 (19)
F1B0.184 (2)0.0958 (12)0.0464 (8)0.0074 (12)0.0272 (10)−0.0194 (8)
F2B0.1211 (15)0.0910 (12)0.0870 (11)−0.0297 (10)0.0105 (10)−0.0319 (9)
F3B0.1288 (16)0.0833 (11)0.1016 (13)0.0405 (11)0.0145 (11)−0.0096 (9)
O1B0.0808 (11)0.0539 (8)0.0378 (7)0.0024 (7)0.0050 (7)−0.0076 (6)
N1B0.0569 (10)0.0439 (9)0.0445 (8)0.0010 (7)0.0025 (7)−0.0065 (7)
N2B0.0636 (11)0.0399 (8)0.0485 (9)−0.0004 (7)0.0033 (8)−0.0091 (7)
N3B0.0814 (14)0.0469 (9)0.0449 (9)−0.0054 (8)0.0032 (9)−0.0030 (7)
C1B0.0470 (12)0.0527 (11)0.0443 (10)0.0000 (8)−0.0010 (8)−0.0089 (8)
C2B0.0628 (15)0.0654 (13)0.0539 (12)−0.0007 (10)0.0010 (10)−0.0197 (10)
C3B0.0583 (15)0.0947 (18)0.0430 (11)−0.0019 (12)0.0022 (10)−0.0127 (11)
C4B0.0622 (15)0.0843 (17)0.0470 (11)−0.0021 (11)0.0016 (10)0.0063 (11)
C5B0.0670 (15)0.0596 (13)0.0545 (12)−0.0006 (10)0.0006 (10)0.0029 (10)
C6B0.0473 (12)0.0528 (11)0.0438 (10)0.0017 (8)−0.0009 (8)−0.0043 (8)
C7B0.0458 (11)0.0443 (10)0.0430 (10)−0.0001 (7)−0.0016 (8)−0.0080 (8)
C8B0.0554 (12)0.0438 (10)0.0428 (10)−0.0037 (8)0.0031 (8)−0.0070 (8)
C9B0.0480 (12)0.0484 (10)0.0420 (10)−0.0038 (8)−0.0018 (8)−0.0031 (8)
C10B0.0935 (19)0.0489 (12)0.0483 (11)−0.0076 (11)0.0039 (11)0.0012 (9)
C11B0.0701 (15)0.0587 (12)0.0393 (10)−0.0053 (10)0.0018 (9)0.0002 (9)
C12B0.0508 (12)0.0532 (11)0.0404 (10)−0.0020 (8)−0.0022 (8)−0.0087 (8)
C13B0.0499 (12)0.0472 (10)0.0407 (9)−0.0037 (8)−0.0012 (8)−0.0037 (8)
C14B0.0641 (14)0.0643 (13)0.0386 (10)0.0024 (10)0.0058 (9)−0.0062 (9)
C15B0.092 (2)0.0712 (15)0.0477 (12)0.0052 (14)0.0155 (12)−0.0112 (11)
C16B0.0879 (18)0.0469 (11)0.0511 (12)−0.0078 (10)0.0046 (11)−0.0043 (9)
OB0.121 (4)0.0422 (11)0.1049 (19)−0.0115 (12)−0.0339 (17)0.0035 (11)
OB'0.119 (13)0.046 (4)0.103 (7)0.015 (5)0.006 (7)−0.008 (4)
S1A—C7A1.7453 (18)F1B—C15B1.332 (3)
S1A—C8A1.8107 (18)F2B—C15B1.320 (3)
F1A—C15A1.333 (3)F3B—C15B1.321 (3)
F2A—C15A1.331 (3)O1B—C12B1.373 (2)
F3A—C15A1.324 (3)O1B—C14B1.410 (2)
O1A—C12A1.367 (2)N1B—C7B1.309 (3)
O1A—C14A1.415 (2)N1B—C6B1.391 (2)
N1A—C7A1.314 (2)N2B—C7B1.360 (2)
N1A—C6A1.394 (2)N2B—C1B1.375 (3)
N2A—C7A1.359 (2)N2B—H2BA0.8600
N2A—C1A1.379 (2)N3B—C10B1.328 (3)
N2A—H2AA0.8600N3B—C9B1.335 (3)
N3A—C10A1.332 (3)C1B—C2B1.388 (3)
N3A—C9A1.344 (2)C1B—C6B1.397 (3)
C1A—C2A1.387 (3)C2B—C3B1.384 (4)
C1A—C6A1.396 (3)C2B—H2BB0.9300
C2A—C3A1.382 (3)C3B—C4B1.386 (4)
C2A—H2AB0.9300C3B—H3BA0.9300
C3A—C4A1.386 (4)C4B—C5B1.376 (3)
C3A—H3AA0.9300C4B—H4BA0.9300
C4A—C5A1.378 (3)C5B—C6B1.386 (3)
C4A—H4AA0.9300C5B—H5BA0.9300
C5A—C6A1.393 (3)C8B—C9B1.504 (3)
C5A—H5AA0.9300C8B—H8BA0.9700
C8A—C9A1.508 (2)C8B—H8BB0.9700
C8A—H8AA0.9700C9B—C13B1.391 (3)
C8A—H8AB0.9700C10B—C11B1.376 (3)
C9A—C13A1.385 (3)C10B—H10B0.9300
C10A—C11A1.369 (3)C11B—C12B1.378 (3)
C10A—H10A0.9300C11B—H11B0.9300
C11A—C12A1.389 (3)C12B—C13B1.391 (3)
C11A—H11A0.9300C13B—C16B1.504 (3)
C12A—C13A1.398 (3)C14B—C15B1.488 (3)
C13A—C16A1.502 (3)C14B—H14C0.9700
C14A—C15A1.485 (3)C14B—H14D0.9700
C14A—H14A0.9700C16B—H16D0.9600
C14A—H14B0.9700C16B—H16E0.9600
C16A—H16A0.9600C16B—H16F0.9600
C16A—H16B0.9600OB—HB10.8399
C16A—H16C0.9600OB—HB1'0.8013
OA—HA10.8349OB—HB20.8132
OA—HA20.8249OB'—HB11.0873
S1B—C7B1.7490 (19)OB'—HB1'0.8201
S1B—C8B1.8146 (19)OB'—HB2'0.8488
C7A—S1A—C8A98.11 (8)C7B—N2B—C1B106.89 (16)
C12A—O1A—C14A117.06 (15)C7B—N2B—H2BA126.6
C7A—N1A—C6A104.30 (16)C1B—N2B—H2BA126.6
C7A—N2A—C1A106.86 (15)C10B—N3B—C9B117.15 (18)
C7A—N2A—H2AA126.6N2B—C1B—C2B132.8 (2)
C1A—N2A—H2AA126.6N2B—C1B—C6B105.28 (16)
C10A—N3A—C9A116.71 (17)C2B—C1B—C6B122.0 (2)
N2A—C1A—C2A132.64 (19)C3B—C2B—C1B116.8 (2)
N2A—C1A—C6A105.19 (16)C3B—C2B—H2BB121.6
C2A—C1A—C6A122.17 (18)C1B—C2B—H2BB121.6
C3A—C2A—C1A116.8 (2)C2B—C3B—C4B121.6 (2)
C3A—C2A—H2AB121.6C2B—C3B—H3BA119.2
C1A—C2A—H2AB121.6C4B—C3B—H3BA119.2
C2A—C3A—C4A121.6 (2)C5B—C4B—C3B121.4 (2)
C2A—C3A—H3AA119.2C5B—C4B—H4BA119.3
C4A—C3A—H3AA119.2C3B—C4B—H4BA119.3
C5A—C4A—C3A121.7 (2)C4B—C5B—C6B118.1 (2)
C5A—C4A—H4AA119.2C4B—C5B—H5BA120.9
C3A—C4A—H4AA119.2C6B—C5B—H5BA120.9
C4A—C5A—C6A117.7 (2)C5B—C6B—N1B130.08 (19)
C4A—C5A—H5AA121.2C5B—C6B—C1B120.15 (19)
C6A—C5A—H5AA121.2N1B—C6B—C1B109.77 (17)
C5A—C6A—N1A129.8 (2)N1B—C7B—N2B113.33 (17)
C5A—C6A—C1A120.08 (19)N1B—C7B—S1B127.96 (14)
N1A—C6A—C1A110.09 (16)N2B—C7B—S1B118.72 (14)
N1A—C7A—N2A113.55 (16)C9B—C8B—S1B108.66 (13)
N1A—C7A—S1A127.99 (14)C9B—C8B—H8BA110.0
N2A—C7A—S1A118.46 (13)S1B—C8B—H8BA110.0
C9A—C8A—S1A109.41 (12)C9B—C8B—H8BB110.0
C9A—C8A—H8AA109.8S1B—C8B—H8BB110.0
S1A—C8A—H8AA109.8H8BA—C8B—H8BB108.3
C9A—C8A—H8AB109.8N3B—C9B—C13B124.19 (18)
S1A—C8A—H8AB109.8N3B—C9B—C8B115.44 (17)
H8AA—C8A—H8AB108.2C13B—C9B—C8B120.37 (17)
N3A—C9A—C13A124.41 (16)N3B—C10B—C11B124.2 (2)
N3A—C9A—C8A115.40 (16)N3B—C10B—H10B117.9
C13A—C9A—C8A120.19 (15)C11B—C10B—H10B117.9
N3A—C10A—C11A124.36 (18)C10B—C11B—C12B117.57 (19)
N3A—C10A—H10A117.8C10B—C11B—H11B121.2
C11A—C10A—H10A117.8C12B—C11B—H11B121.2
C10A—C11A—C12A118.03 (18)O1B—C12B—C11B123.44 (18)
C10A—C11A—H11A121.0O1B—C12B—C13B115.97 (17)
C12A—C11A—H11A121.0C11B—C12B—C13B120.59 (18)
O1A—C12A—C11A123.68 (17)C9B—C13B—C12B116.33 (18)
O1A—C12A—C13A116.54 (16)C9B—C13B—C16B122.53 (18)
C11A—C12A—C13A119.78 (18)C12B—C13B—C16B121.12 (18)
C9A—C13A—C12A116.69 (16)O1B—C14B—C15B107.66 (18)
C9A—C13A—C16A122.08 (16)O1B—C14B—H14C110.2
C12A—C13A—C16A121.23 (17)C15B—C14B—H14C110.2
O1A—C14A—C15A107.55 (17)O1B—C14B—H14D110.2
O1A—C14A—H14A110.2C15B—C14B—H14D110.2
C15A—C14A—H14A110.2H14C—C14B—H14D108.5
O1A—C14A—H14B110.2F2B—C15B—F3B105.5 (2)
C15A—C14A—H14B110.2F2B—C15B—F1B107.3 (2)
H14A—C14A—H14B108.5F3B—C15B—F1B107.3 (2)
F3A—C15A—F2A105.6 (2)F2B—C15B—C14B113.3 (2)
F3A—C15A—F1A107.3 (2)F3B—C15B—C14B113.3 (2)
F2A—C15A—F1A106.2 (2)F1B—C15B—C14B109.8 (2)
F3A—C15A—C14A113.8 (2)C13B—C16B—H16D109.5
F2A—C15A—C14A113.79 (19)C13B—C16B—H16E109.5
F1A—C15A—C14A109.6 (2)H16D—C16B—H16E109.5
C13A—C16A—H16A109.5C13B—C16B—H16F109.5
C13A—C16A—H16B109.5H16D—C16B—H16F109.5
H16A—C16A—H16B109.5H16E—C16B—H16F109.5
C13A—C16A—H16C109.5HB1—OB—HB1'19.7
H16A—C16A—H16C109.5HB1—OB—HB2102.8
H16B—C16A—H16C109.5HB1'—OB—HB2122.4
HA1—OA—HA2109.7HB1—OB'—HB1'5.6
C7B—S1B—C8B98.24 (9)HB1—OB'—HB2'102.8
C12B—O1B—C14B116.91 (16)HB1'—OB'—HB2'104.6
C7B—N1B—C6B104.74 (16)
C7A—N2A—C1A—C2A179.6 (2)C7B—N2B—C1B—C2B−179.7 (2)
C7A—N2A—C1A—C6A0.33 (19)C7B—N2B—C1B—C6B−0.1 (2)
N2A—C1A—C2A—C3A178.4 (2)N2B—C1B—C2B—C3B179.3 (2)
C6A—C1A—C2A—C3A−2.4 (3)C6B—C1B—C2B—C3B−0.1 (3)
C1A—C2A—C3A—C4A0.7 (3)C1B—C2B—C3B—C4B0.1 (4)
C2A—C3A—C4A—C5A1.2 (4)C2B—C3B—C4B—C5B−0.2 (4)
C3A—C4A—C5A—C6A−1.3 (3)C3B—C4B—C5B—C6B0.1 (4)
C4A—C5A—C6A—N1A−178.5 (2)C4B—C5B—C6B—N1B−179.5 (2)
C4A—C5A—C6A—C1A−0.3 (3)C4B—C5B—C6B—C1B−0.1 (3)
C7A—N1A—C6A—C5A177.7 (2)C7B—N1B—C6B—C5B179.6 (2)
C7A—N1A—C6A—C1A−0.6 (2)C7B—N1B—C6B—C1B0.1 (2)
N2A—C1A—C6A—C5A−178.36 (18)N2B—C1B—C6B—C5B−179.5 (2)
C2A—C1A—C6A—C5A2.2 (3)C2B—C1B—C6B—C5B0.1 (3)
N2A—C1A—C6A—N1A0.2 (2)N2B—C1B—C6B—N1B0.0 (2)
C2A—C1A—C6A—N1A−179.23 (17)C2B—C1B—C6B—N1B179.6 (2)
C6A—N1A—C7A—N2A0.8 (2)C6B—N1B—C7B—N2B−0.2 (2)
C6A—N1A—C7A—S1A−179.74 (14)C6B—N1B—C7B—S1B179.98 (16)
C1A—N2A—C7A—N1A−0.8 (2)C1B—N2B—C7B—N1B0.2 (2)
C1A—N2A—C7A—S1A179.75 (12)C1B—N2B—C7B—S1B−179.95 (15)
C8A—S1A—C7A—N1A0.36 (18)C8B—S1B—C7B—N1B−0.7 (2)
C8A—S1A—C7A—N2A179.76 (14)C8B—S1B—C7B—N2B179.57 (16)
C7A—S1A—C8A—C9A178.84 (12)C7B—S1B—C8B—C9B179.89 (14)
C10A—N3A—C9A—C13A−1.6 (3)C10B—N3B—C9B—C13B0.3 (3)
C10A—N3A—C9A—C8A178.03 (17)C10B—N3B—C9B—C8B−179.8 (2)
S1A—C8A—C9A—N3A0.16 (19)S1B—C8B—C9B—N3B−0.3 (2)
S1A—C8A—C9A—C13A179.79 (13)S1B—C8B—C9B—C13B179.63 (16)
C9A—N3A—C10A—C11A1.0 (3)C9B—N3B—C10B—C11B−0.5 (4)
N3A—C10A—C11A—C12A0.4 (3)N3B—C10B—C11B—C12B0.1 (4)
C14A—O1A—C12A—C11A−0.3 (3)C14B—O1B—C12B—C11B6.8 (3)
C14A—O1A—C12A—C13A−179.93 (16)C14B—O1B—C12B—C13B−173.54 (19)
C10A—C11A—C12A—O1A179.03 (18)C10B—C11B—C12B—O1B−179.9 (2)
C10A—C11A—C12A—C13A−1.4 (3)C10B—C11B—C12B—C13B0.5 (3)
N3A—C9A—C13A—C12A0.7 (3)N3B—C9B—C13B—C12B0.2 (3)
C8A—C9A—C13A—C12A−178.93 (16)C8B—C9B—C13B—C12B−179.64 (18)
N3A—C9A—C13A—C16A179.90 (17)N3B—C9B—C13B—C16B−178.9 (2)
C8A—C9A—C13A—C16A0.3 (3)C8B—C9B—C13B—C16B1.2 (3)
O1A—C12A—C13A—C9A−179.52 (15)O1B—C12B—C13B—C9B179.70 (18)
C11A—C12A—C13A—C9A0.8 (3)C11B—C12B—C13B—C9B−0.7 (3)
O1A—C12A—C13A—C16A1.2 (2)O1B—C12B—C13B—C16B−1.1 (3)
C11A—C12A—C13A—C16A−178.39 (17)C11B—C12B—C13B—C16B178.5 (2)
C12A—O1A—C14A—C15A−176.73 (17)C12B—O1B—C14B—C15B171.8 (2)
O1A—C14A—C15A—F3A−60.9 (2)O1B—C14B—C15B—F2B−57.4 (3)
O1A—C14A—C15A—F2A60.1 (2)O1B—C14B—C15B—F3B62.7 (3)
O1A—C14A—C15A—F1A178.9 (2)O1B—C14B—C15B—F1B−177.4 (2)
D—H···AD—HH···AD···AD—H···A
N2A—H2AA···OA0.861.952.771 (2)161
OA—HA1···N1Ai0.832.002.806 (2)161
N2B—H2BA···OB0.861.982.799 (3)160
OB—HB1···N1Bii0.842.032.798 (3)152
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2A—H2AA⋯OA0.861.952.771 (2)161
OA—HA1⋯N1Ai0.832.002.806 (2)161
N2B—H2BA⋯OB0.861.982.799 (3)160
OB—HB1⋯N1Bii0.842.032.798 (3)152

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Lansoprazole, a novel benzimidazole proton pump inhibitor, and its related compounds have selective activity against Helicobacter pylori.

Authors:  T Iwahi; H Satoh; M Nakao; T Iwasaki; T Yamazaki; K Kubo; T Tamura; A Imada
Journal:  Antimicrob Agents Chemother       Date:  1991-03       Impact factor: 5.191

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Bis(2-{[3-methyl-4-(2,2,2-trifluoro-eth-oxy)-2-pyrid-yl]methyl-sulfan-yl}-1H,3H-benzimidazolium) 2,5-dichloro-3,6-dioxocyclo-hexa-1,4-diene-1,4-diolate.

Authors:  Q N M Hakim Al-Arique; Jerry P Jasinski; Ray J Butcher; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-29

4.  Highly enantioselective oxidation of sulfides to sulfoxides by a new oxaziridinium salt.

Authors:  R E del Río; B Wang; S Achab; L Bohé
Journal:  Org Lett       Date:  2007-05-09       Impact factor: 6.005

  4 in total
  2 in total

1.  2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole monohydrate: a monoclinic polymorph.

Authors:  Yu-Feng Chen; Jin-Yao Chen; Ming-Huang Hong; Jie Lu; Guo-Bin Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole propan-2-ol monosolvate: a second monoclinic polymorph.

Authors:  Jin-Ju Ma; Ming-Hui Qi; Ming-Huang Hong; Jie Lu; Guo-Bin Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  2 in total

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