Literature DB >> 21579567

Bis(2-{[3-methyl-4-(2,2,2-trifluoro-eth-oxy)-2-pyrid-yl]methyl-sulfan-yl}-1H,3H-benzimidazolium) 2,5-dichloro-3,6-dioxocyclo-hexa-1,4-diene-1,4-diolate.

Q N M Hakim Al-Arique, Jerry P Jasinski, Ray J Butcher, H S Yathirajan, B Narayana.   

Abstract

The title salt, 2C(16)H(15)F(3)N(3)OS(+)·C(6)Cl(2)O(4) (2-), is composed of two independent cations of a lansoprazole {systematic name 2-([3-methyl-4-(2,2,2-trifluoroethoxy)pyridin-2-yl]methylsulfinyl)-1H-benzo[d]imidazole} inter-mediate and a dianion of chloranilic acid. In the cations of the lansoprazole inter-mediate, the dihedral angles between the least-squares planes of the pyridine and benzimidazole rings are 11.1 (6) and 13.1 (5)°, respectively. The dihedral angles between the mean plane of the benzene ring in the chloranilic acid dianion and the pryidine and benzimidazole rings of the two lansoprazole inter-mediate groups are 71.8 (1)/80.5 (7) and 74.2 (4)/74.8 (6)°. In addition to ionic bond inter-actions, the lansoprazole inter-mediate and chloranilic ions are connected by strong N-H⋯O hydrogen bonds, which produce a set of extended O-H⋯O-H⋯O-H chains along the b axis in the (011) plane. In addition, weak C-H⋯O, C-H⋯F, N-H⋯Cl and π-π [centroid-centroid distances = 3.5631 (15), 3.8187 (13), 3.7434 (17) and 3.842 (2) Å] inter-molecular inter-actions are observed, which contribute to crystal packing stability.

Entities:  

Year:  2010        PMID: 21579567      PMCID: PMC2979375          DOI: 10.1107/S1600536810019665

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bacterial growth inhibition by lansoprazole and its analogs, see: Iwahi et al. (1991 ▶). For related structures, see: Arslan et al. (2006 ▶); Gotoh et al. (2006 ▶, 2007 ▶, 2008 ▶); Ishida (2004a ▶,b ▶,c ▶); Ishida & Kashino (1999 ▶, 2000 ▶); Meng & Qian (2006 ▶); Refat et al. (2006 ▶); Swamy & Ravikumar (2007 ▶); Tabuchi et al. (2005 ▶); Vyas et al. (2000 ▶).

Experimental

Crystal data

2C16H15F3N3OSC6Cl2O4 2− M = 915.70 Monoclinic, a = 9.48575 (8) Å b = 23.6316 (2) Å c = 17.86775 (15) Å β = 100.2065 (9)° V = 3941.92 (6) Å3 Z = 4 Cu Kα radiation μ = 3.22 mm−1 T = 295 K 0.38 × 0.24 × 0.19 mm

Data collection

Oxford Diffraction Xcalibur Ruby Gemini diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.692, T max = 1.000 19572 measured reflections 8269 independent reflections 6572 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.158 S = 1.10 8269 reflections 600 parameters 138 restraints H-atom parameters constrained Δρmax = 0.87 e Å−3 Δρmin = −0.49 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810019665/bt5269sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810019665/bt5269Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C16H15F3N3OS+·C6Cl2O42F(000) = 1872
Mr = 915.70Dx = 1.543 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ynCell parameters from 10683 reflections
a = 9.48575 (8) Åθ = 4.5–77.4°
b = 23.6316 (2) ŵ = 3.22 mm1
c = 17.86775 (15) ÅT = 295 K
β = 100.2065 (9)°Prism, red-brown
V = 3941.92 (6) Å30.38 × 0.24 × 0.19 mm
Z = 4
Oxford Diffraction Xcalibur Ruby Gemini diffractometer8269 independent reflections
Radiation source: Enhance (Cu) X-ray Source6572 reflections with I > 2σ(I)
graphiteRint = 0.019
Detector resolution: 10.5081 pixels mm-1θmax = 77.6°, θmin = 4.5°
ω scansh = −11→10
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −29→21
Tmin = 0.692, Tmax = 1.000l = −21→22
19572 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.10w = 1/[σ2(Fo2) + (0.1054P)2 + 0.2084P] where P = (Fo2 + 2Fc2)/3
8269 reflections(Δ/σ)max = 0.007
600 parametersΔρmax = 0.87 e Å3
138 restraintsΔρmin = −0.49 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cl1−0.02389 (6)0.28125 (3)0.75775 (3)0.06238 (17)
Cl20.65326 (6)0.29242 (4)0.82221 (3)0.06540 (18)
O20.16831 (17)0.31643 (8)0.65093 (9)0.0562 (4)
O30.45465 (16)0.32221 (7)0.67875 (8)0.0499 (4)
O50.45948 (16)0.26157 (7)0.92935 (8)0.0487 (3)
O60.17567 (16)0.25255 (8)0.90012 (9)0.0518 (4)
C10.1616 (2)0.28648 (9)0.77553 (11)0.0401 (4)
C20.2306 (2)0.30329 (8)0.71610 (11)0.0387 (4)
C30.3966 (2)0.30515 (8)0.73206 (11)0.0380 (4)
C40.4674 (2)0.28877 (9)0.80369 (11)0.0410 (4)
C50.3979 (2)0.27343 (8)0.86360 (10)0.0372 (4)
C60.2333 (2)0.27039 (8)0.84730 (11)0.0368 (4)
S1A0.76555 (7)0.36213 (3)0.55737 (3)0.05601 (14)
F1A0.9879 (2)0.53715 (13)0.14545 (16)0.161 (4)0.361 (5)
F2A1.1807 (2)0.50633 (8)0.2122 (2)0.105 (2)0.361 (5)
F3A1.1443 (3)0.59488 (7)0.2010 (3)0.149 (3)0.361 (5)
F1AA1.0095 (2)0.51401 (8)0.15374 (14)0.1149 (16)0.639 (5)
F2AA1.21213 (17)0.52535 (11)0.2249 (2)0.153 (2)0.639 (5)
F3AA1.0897 (4)0.59702 (6)0.1800 (2)0.216 (3)0.639 (5)
O1A0.9921 (3)0.49361 (8)0.29873 (12)0.0721 (5)
N1A0.68513 (19)0.27244 (9)0.63087 (10)0.0479 (4)
H1AA0.63380.29310.65520.057*
N2A0.8291 (2)0.24764 (8)0.55373 (10)0.0469 (4)
H2AA0.88530.24970.52100.056*
N3A0.8120 (2)0.45798 (9)0.48750 (13)0.0592 (5)
C1A0.7631 (2)0.29124 (10)0.58035 (11)0.0450 (5)
C2A0.7007 (2)0.21455 (11)0.63736 (12)0.0496 (5)
C3A0.6439 (3)0.17509 (13)0.68139 (16)0.0650 (7)
H3AA0.58430.18580.71500.078*
C4A0.6802 (4)0.11919 (14)0.67281 (19)0.0813 (9)
H4AA0.64470.09160.70160.098*
C5A0.7691 (4)0.10301 (14)0.62188 (19)0.0781 (8)
H5AA0.78940.06480.61690.094*
C6A0.8277 (3)0.14224 (12)0.57871 (15)0.0634 (6)
H6AA0.88790.13150.54540.076*
C7A0.7919 (2)0.19858 (11)0.58771 (12)0.0492 (5)
C8A0.8823 (3)0.36051 (11)0.48755 (15)0.0570 (6)
H8AA0.97940.35130.51160.068*
H8AB0.84970.33230.44900.068*
C9A0.8769 (3)0.41856 (10)0.45245 (14)0.0517 (5)
C10A0.8074 (3)0.51054 (12)0.45988 (16)0.0653 (7)
H10A0.76200.53820.48400.078*
C11A0.8657 (3)0.52621 (12)0.39785 (16)0.0641 (6)
H11A0.86120.56340.38070.077*
C12A0.9315 (3)0.48433 (11)0.36190 (15)0.0577 (6)
C13A0.9393 (3)0.42859 (10)0.38825 (14)0.0526 (5)
C14A1.0114 (3)0.38352 (12)0.34966 (17)0.0673 (7)
H14A1.01940.34960.37970.101*
H14B1.10520.39610.34420.101*
H14C0.95580.37590.30040.101*
C15A1.0090 (6)0.54929 (14)0.2751 (2)0.0985 (12)
H15A1.06670.57080.31560.118*
H15B0.91650.56760.26150.118*
C16A1.08337 (16)0.54588 (6)0.20623 (10)0.1085 (15)
S1B0.37775 (7)0.35551 (3)0.47949 (3)0.05589 (14)
F1B0.46185 (16)0.52009 (8)0.0783 (2)0.144 (2)0.684 (5)
F2B0.68815 (15)0.52999 (10)0.10037 (18)0.1317 (14)0.684 (5)
F3B0.5535 (3)0.60246 (6)0.08372 (17)0.1343 (16)0.684 (5)
F1BB0.5025 (3)0.59349 (8)0.0729 (2)0.114 (3)0.316 (5)
F2BB0.5274 (3)0.50406 (7)0.0777 (2)0.115 (3)0.316 (5)
F3BB0.70535 (15)0.55741 (14)0.1178 (3)0.162 (4)0.316 (5)
O1B0.5855 (3)0.50090 (9)0.22645 (11)0.0748 (6)
N1B0.2888 (2)0.26340 (9)0.54297 (11)0.0492 (4)
H1BA0.23740.28350.56790.059*
N2B0.4330 (2)0.24045 (8)0.46559 (10)0.0467 (4)
H2BA0.48920.24340.43290.056*
N3B0.4174 (3)0.45403 (9)0.41534 (12)0.0618 (5)
C1B0.3674 (2)0.28334 (10)0.49428 (11)0.0446 (4)
C2B0.3029 (3)0.20543 (11)0.54709 (14)0.0540 (5)
C3B0.2441 (4)0.16568 (14)0.58983 (19)0.0760 (8)
H3BA0.18320.17590.62300.091*
C4B0.2813 (5)0.10991 (17)0.5801 (2)0.0975 (12)
H4BA0.24490.08170.60770.117*
C5B0.3720 (5)0.09494 (15)0.5299 (3)0.0991 (13)
H5BA0.39350.05690.52450.119*
C6B0.4311 (4)0.13501 (13)0.48792 (18)0.0744 (8)
H6BA0.49220.12470.45490.089*
C7B0.3950 (3)0.19064 (11)0.49732 (13)0.0526 (5)
C8B0.4554 (3)0.35551 (11)0.39369 (13)0.0556 (6)
H8BA0.54870.33750.40320.067*
H8BB0.39410.33500.35350.067*
C9B0.4691 (3)0.41622 (10)0.37107 (12)0.0495 (5)
C10B0.4281 (4)0.50877 (12)0.39791 (16)0.0680 (7)
H10B0.39620.53550.42930.082*
C11B0.4831 (3)0.52773 (12)0.33653 (15)0.0652 (7)
H11B0.48760.56620.32600.078*
C12B0.5319 (3)0.48743 (11)0.29059 (13)0.0566 (6)
C13B0.5295 (3)0.43033 (10)0.30822 (12)0.0513 (5)
C14B0.5910 (3)0.38603 (12)0.26233 (15)0.0655 (7)
H14D0.62830.40400.22180.098*
H14E0.51710.35980.24150.098*
H14F0.66670.36610.29460.098*
C15B0.5554 (4)0.55470 (13)0.19478 (18)0.0803 (9)
H15C0.62290.58220.22070.096*
H15D0.45950.56630.20010.096*
C16B0.56725 (15)0.55150 (6)0.11217 (10)0.0924 (11)
U11U22U33U12U13U23
Cl10.0340 (2)0.1034 (5)0.0508 (3)−0.0013 (2)0.0106 (2)0.0039 (3)
Cl20.0347 (2)0.1177 (5)0.0455 (3)−0.0089 (3)0.0117 (2)0.0020 (3)
O20.0479 (8)0.0864 (11)0.0365 (7)0.0193 (8)0.0130 (6)0.0129 (7)
O30.0493 (7)0.0665 (9)0.0389 (7)−0.0025 (7)0.0212 (6)0.0073 (6)
O50.0436 (7)0.0706 (9)0.0325 (7)−0.0026 (7)0.0081 (6)0.0078 (6)
O60.0443 (7)0.0765 (10)0.0379 (7)−0.0111 (7)0.0164 (6)0.0072 (7)
C10.0313 (8)0.0535 (10)0.0374 (9)−0.0002 (7)0.0110 (7)0.0003 (8)
C20.0398 (9)0.0452 (9)0.0334 (9)0.0063 (7)0.0127 (7)0.0008 (7)
C30.0396 (9)0.0429 (9)0.0346 (9)−0.0001 (7)0.0147 (7)0.0005 (7)
C40.0321 (8)0.0577 (11)0.0354 (9)−0.0044 (8)0.0117 (7)0.0010 (8)
C50.0382 (9)0.0430 (9)0.0320 (8)−0.0026 (7)0.0106 (7)0.0008 (7)
C60.0378 (9)0.0408 (9)0.0341 (8)−0.0045 (7)0.0130 (7)−0.0013 (7)
S1A0.0645 (3)0.0645 (3)0.0451 (3)0.0095 (3)0.0264 (2)−0.0001 (2)
F1A0.162 (7)0.194 (7)0.125 (6)−0.033 (6)0.018 (5)0.057 (6)
F2A0.113 (4)0.084 (3)0.136 (5)−0.031 (3)0.073 (4)−0.031 (3)
F3A0.227 (6)0.088 (4)0.166 (6)−0.049 (4)0.124 (5)0.007 (4)
F1AA0.176 (4)0.110 (3)0.0567 (18)0.033 (3)0.016 (2)−0.0122 (17)
F2AA0.109 (3)0.207 (5)0.149 (4)−0.066 (3)0.042 (3)−0.009 (4)
F3AA0.442 (8)0.104 (4)0.136 (4)−0.017 (5)0.142 (5)0.011 (3)
O1A0.0979 (14)0.0607 (10)0.0668 (11)−0.0055 (10)0.0391 (10)0.0041 (9)
N1A0.0432 (9)0.0682 (11)0.0350 (8)−0.0004 (8)0.0144 (7)−0.0060 (8)
N2A0.0453 (8)0.0673 (11)0.0309 (8)0.0023 (8)0.0142 (7)−0.0026 (7)
N3A0.0671 (12)0.0609 (11)0.0552 (11)0.0049 (10)0.0261 (9)−0.0069 (9)
C1A0.0412 (9)0.0653 (12)0.0298 (8)0.0003 (9)0.0097 (7)−0.0036 (8)
C2A0.0472 (11)0.0671 (13)0.0361 (10)−0.0062 (9)0.0119 (8)−0.0051 (9)
C3A0.0706 (15)0.0759 (16)0.0553 (13)−0.0119 (13)0.0301 (12)−0.0056 (12)
C4A0.107 (2)0.0754 (18)0.0710 (18)−0.0169 (17)0.0404 (17)−0.0002 (15)
C5A0.101 (2)0.0652 (16)0.0752 (18)−0.0023 (15)0.0363 (17)−0.0048 (14)
C6A0.0743 (16)0.0688 (15)0.0511 (13)0.0052 (12)0.0219 (12)−0.0066 (11)
C7A0.0501 (11)0.0659 (13)0.0330 (9)−0.0028 (10)0.0108 (8)−0.0056 (9)
C8A0.0640 (13)0.0591 (13)0.0554 (13)0.0039 (11)0.0313 (11)−0.0038 (10)
C9A0.0541 (11)0.0573 (12)0.0470 (11)0.0001 (10)0.0180 (9)−0.0068 (9)
C10A0.0741 (16)0.0620 (14)0.0636 (15)0.0097 (12)0.0230 (13)−0.0104 (12)
C11A0.0773 (16)0.0535 (13)0.0636 (15)0.0023 (12)0.0186 (13)−0.0012 (11)
C12A0.0625 (13)0.0615 (13)0.0522 (12)−0.0056 (11)0.0192 (10)−0.0022 (10)
C13A0.0557 (12)0.0576 (12)0.0488 (11)−0.0010 (10)0.0208 (10)−0.0052 (10)
C14A0.0813 (16)0.0654 (15)0.0651 (15)0.0067 (13)0.0399 (13)−0.0019 (12)
C15A0.162 (4)0.0620 (17)0.083 (2)−0.012 (2)0.054 (2)0.0002 (16)
C16A0.184 (5)0.072 (2)0.076 (2)−0.025 (3)0.040 (3)0.0107 (18)
S1B0.0684 (3)0.0580 (3)0.0482 (3)0.0082 (3)0.0293 (2)0.0006 (2)
F1B0.211 (5)0.118 (3)0.091 (3)−0.007 (3)−0.006 (3)−0.012 (2)
F2B0.191 (3)0.118 (3)0.117 (2)0.027 (3)0.110 (2)0.008 (2)
F3B0.265 (5)0.0703 (18)0.091 (2)0.014 (2)0.094 (3)0.0221 (16)
F1BB0.135 (6)0.123 (6)0.083 (5)0.006 (5)0.017 (4)0.047 (4)
F2BB0.188 (7)0.108 (5)0.053 (3)0.038 (5)0.028 (4)−0.009 (3)
F3BB0.150 (7)0.205 (9)0.149 (7)−0.009 (6)0.076 (6)0.030 (7)
O1B0.1124 (15)0.0664 (11)0.0570 (10)0.0159 (11)0.0467 (10)0.0109 (8)
N1B0.0446 (9)0.0646 (11)0.0415 (9)0.0019 (8)0.0158 (7)−0.0003 (8)
N2B0.0459 (9)0.0610 (10)0.0353 (8)0.0045 (8)0.0124 (7)−0.0030 (7)
N3B0.0853 (14)0.0589 (11)0.0494 (10)0.0164 (10)0.0340 (10)0.0038 (9)
C1B0.0416 (9)0.0599 (12)0.0332 (9)0.0020 (8)0.0088 (7)−0.0019 (8)
C2B0.0521 (12)0.0662 (14)0.0443 (11)−0.0036 (10)0.0103 (9)−0.0003 (10)
C3B0.0829 (18)0.0791 (18)0.0714 (18)−0.0151 (15)0.0283 (15)0.0081 (15)
C4B0.123 (3)0.079 (2)0.096 (3)−0.018 (2)0.036 (2)0.0131 (19)
C5B0.143 (4)0.0581 (17)0.097 (3)0.000 (2)0.024 (3)0.0009 (17)
C6B0.094 (2)0.0654 (16)0.0653 (17)0.0083 (15)0.0192 (15)−0.0082 (13)
C7B0.0550 (12)0.0615 (13)0.0408 (11)0.0016 (10)0.0071 (9)−0.0021 (9)
C8B0.0700 (14)0.0589 (13)0.0435 (11)0.0150 (11)0.0257 (10)0.0054 (9)
C9B0.0563 (11)0.0569 (12)0.0378 (10)0.0129 (10)0.0151 (9)0.0019 (9)
C10B0.0955 (18)0.0612 (14)0.0562 (13)0.0193 (13)0.0377 (13)−0.0011 (11)
C11B0.0927 (19)0.0547 (13)0.0548 (13)0.0128 (13)0.0310 (13)0.0052 (11)
C12B0.0704 (14)0.0635 (13)0.0404 (11)0.0083 (11)0.0223 (10)0.0047 (10)
C13B0.0613 (12)0.0585 (12)0.0363 (10)0.0128 (10)0.0148 (9)0.0012 (9)
C14B0.0878 (17)0.0666 (15)0.0495 (12)0.0172 (13)0.0321 (12)−0.0007 (11)
C15B0.129 (3)0.0583 (15)0.0645 (16)−0.0002 (16)0.0478 (17)0.0028 (12)
C16B0.148 (3)0.0671 (18)0.075 (2)0.002 (2)0.054 (2)0.0131 (16)
Cl1—C11.7363 (19)C14A—H14A0.9600
Cl2—C41.7370 (19)C14A—H14B0.9600
O2—C21.248 (2)C14A—H14C0.9600
O3—C31.249 (2)C15A—C16A1.525 (4)
O5—C51.248 (2)C15A—H15A0.9700
O6—C61.245 (2)C15A—H15B0.9700
C1—C61.394 (3)S1B—C1B1.731 (2)
C1—C21.400 (3)S1B—C8B1.814 (2)
C2—C31.551 (3)F1B—C16B1.3048 (11)
C3—C41.391 (3)F2B—C16B1.3053 (11)
C4—C51.401 (3)F3B—C16B1.3047 (11)
C5—C61.539 (3)F1BB—C16B1.3039 (12)
S1A—C1A1.726 (2)F2BB—C16B1.3026 (12)
S1A—C8A1.809 (2)F3BB—C16B1.3034 (11)
F1A—C16A1.3016 (12)O1B—C12B1.371 (3)
F2A—C16A1.3045 (11)O1B—C15B1.400 (4)
F3A—C16A1.3052 (12)N1B—C1B1.328 (3)
F1AA—C16A1.3056 (11)N1B—C2B1.377 (3)
F2AA—C16A1.3016 (11)N1B—H1BA0.8600
F3AA—C16A1.3014 (12)N2B—C1B1.338 (3)
O1A—C12A1.372 (3)N2B—C7B1.382 (3)
O1A—C15A1.400 (4)N2B—H2BA0.8600
N1A—C1A1.340 (3)N3B—C10B1.339 (4)
N1A—C2A1.379 (3)N3B—C9B1.342 (3)
N1A—H1AA0.8600C2B—C3B1.389 (4)
N2A—C1A1.336 (3)C2B—C7B1.397 (3)
N2A—C7A1.383 (3)C3B—C4B1.383 (5)
N2A—H2AA0.8600C3B—H3BA0.9300
N3A—C9A1.332 (3)C4B—C5B1.393 (6)
N3A—C10A1.334 (4)C4B—H4BA0.9300
C2A—C3A1.389 (4)C5B—C6B1.387 (5)
C2A—C7A1.397 (3)C5B—H5BA0.9300
C3A—C4A1.381 (5)C6B—C7B1.376 (4)
C3A—H3AA0.9300C6B—H6BA0.9300
C4A—C5A1.399 (4)C8B—C9B1.502 (3)
C4A—H4AA0.9300C8B—H8BA0.9700
C5A—C6A1.384 (4)C8B—H8BB0.9700
C5A—H5AA0.9300C9B—C13B1.389 (3)
C6A—C7A1.390 (4)C10B—C11B1.371 (4)
C6A—H6AA0.9300C10B—H10B0.9300
C8A—C9A1.505 (4)C11B—C12B1.389 (3)
C8A—H8AA0.9700C11B—H11B0.9300
C8A—H8AB0.9700C12B—C13B1.387 (4)
C9A—C13A1.401 (3)C13B—C14B1.509 (3)
C10A—C11A1.374 (4)C14B—H14D0.9600
C10A—H10A0.9300C14B—H14E0.9600
C11A—C12A1.387 (4)C14B—H14F0.9600
C11A—H11A0.9300C15B—C16B1.502 (3)
C12A—C13A1.396 (4)C15B—H15C0.9700
C13A—C14A1.498 (3)C15B—H15D0.9700
C6—C1—C2123.92 (18)F2AA—C16A—F1AA109.21 (12)
C6—C1—Cl1117.53 (15)F2A—C16A—F1AA85.83 (17)
C2—C1—Cl1118.44 (15)F3A—C16A—F1AA130.4 (2)
O2—C2—C1124.80 (18)F3AA—C16A—C15A107.4 (2)
O2—C2—C3117.51 (17)F2AA—C16A—C15A111.1 (3)
C1—C2—C3117.69 (17)F1A—C16A—C15A109.2 (3)
O3—C3—C4125.85 (18)F2A—C16A—C15A113.2 (3)
O3—C3—C2116.08 (17)F3A—C16A—C15A106.6 (3)
C4—C3—C2118.06 (16)F1AA—C16A—C15A110.1 (2)
C3—C4—C5124.00 (18)C1B—S1B—C8B99.87 (11)
C3—C4—Cl2118.02 (14)C12B—O1B—C15B118.0 (2)
C5—C4—Cl2117.81 (15)C1B—N1B—C2B109.11 (19)
O5—C5—C4124.93 (18)C1B—N1B—H1BA125.4
O5—C5—C6117.24 (16)C2B—N1B—H1BA125.4
C4—C5—C6117.83 (16)C1B—N2B—C7B108.40 (19)
O6—C6—C1125.59 (18)C1B—N2B—H2BA125.8
O6—C6—C5116.07 (17)C7B—N2B—H2BA125.8
C1—C6—C5118.34 (16)C10B—N3B—C9B117.1 (2)
C1A—S1A—C8A100.32 (11)N1B—C1B—N2B109.6 (2)
C12A—O1A—C15A119.0 (2)N1B—C1B—S1B120.19 (17)
C1A—N1A—C2A108.78 (19)N2B—C1B—S1B130.18 (17)
C1A—N1A—H1AA125.6N1B—C2B—C3B131.1 (3)
C2A—N1A—H1AA125.6N1B—C2B—C7B106.3 (2)
C1A—N2A—C7A108.54 (18)C3B—C2B—C7B122.6 (3)
C1A—N2A—H2AA125.7C4B—C3B—C2B116.0 (3)
C7A—N2A—H2AA125.7C4B—C3B—H3BA122.0
C9A—N3A—C10A117.7 (2)C2B—C3B—H3BA122.0
N2A—C1A—N1A109.5 (2)C3B—C4B—C5B121.5 (3)
N2A—C1A—S1A129.56 (16)C3B—C4B—H4BA119.2
N1A—C1A—S1A120.94 (17)C5B—C4B—H4BA119.2
N1A—C2A—C3A131.9 (2)C6B—C5B—C4B122.0 (3)
N1A—C2A—C7A106.5 (2)C6B—C5B—H5BA119.0
C3A—C2A—C7A121.6 (2)C4B—C5B—H5BA119.0
C4A—C3A—C2A116.7 (3)C7B—C6B—C5B117.0 (3)
C4A—C3A—H3AA121.6C7B—C6B—H6BA121.5
C2A—C3A—H3AA121.6C5B—C6B—H6BA121.5
C3A—C4A—C5A121.7 (3)C6B—C7B—N2B132.5 (3)
C3A—C4A—H4AA119.2C6B—C7B—C2B120.9 (3)
C5A—C4A—H4AA119.2N2B—C7B—C2B106.6 (2)
C6A—C5A—C4A121.8 (3)C9B—C8B—S1B107.15 (16)
C6A—C5A—H5AA119.1C9B—C8B—H8BA110.3
C4A—C5A—H5AA119.1S1B—C8B—H8BA110.3
C5A—C6A—C7A116.5 (3)C9B—C8B—H8BB110.3
C5A—C6A—H6AA121.7S1B—C8B—H8BB110.3
C7A—C6A—H6AA121.7H8BA—C8B—H8BB108.5
N2A—C7A—C6A131.7 (2)N3B—C9B—C13B124.2 (2)
N2A—C7A—C2A106.7 (2)N3B—C9B—C8B114.8 (2)
C6A—C7A—C2A121.6 (2)C13B—C9B—C8B121.0 (2)
C9A—C8A—S1A106.77 (16)N3B—C10B—C11B123.8 (2)
C9A—C8A—H8AA110.4N3B—C10B—H10B118.1
S1A—C8A—H8AA110.4C11B—C10B—H10B118.1
C9A—C8A—H8AB110.4C10B—C11B—C12B117.6 (2)
S1A—C8A—H8AB110.4C10B—C11B—H11B121.2
H8AA—C8A—H8AB108.6C12B—C11B—H11B121.2
N3A—C9A—C13A124.3 (2)O1B—C12B—C13B116.0 (2)
N3A—C9A—C8A115.2 (2)O1B—C12B—C11B123.1 (2)
C13A—C9A—C8A120.5 (2)C13B—C12B—C11B120.8 (2)
N3A—C10A—C11A123.9 (2)C12B—C13B—C9B116.3 (2)
N3A—C10A—H10A118.1C12B—C13B—C14B121.9 (2)
C11A—C10A—H10A118.1C9B—C13B—C14B121.8 (2)
C10A—C11A—C12A117.4 (3)C13B—C14B—H14D109.5
C10A—C11A—H11A121.3C13B—C14B—H14E109.5
C12A—C11A—H11A121.3H14D—C14B—H14E109.5
O1A—C12A—C11A123.7 (2)C13B—C14B—H14F109.5
O1A—C12A—C13A115.0 (2)H14D—C14B—H14F109.5
C11A—C12A—C13A121.2 (2)H14E—C14B—H14F109.5
C12A—C13A—C9A115.5 (2)O1B—C15B—C16B107.8 (2)
C12A—C13A—C14A121.1 (2)O1B—C15B—H15C110.1
C9A—C13A—C14A123.4 (2)C16B—C15B—H15C110.1
C13A—C14A—H14A109.5O1B—C15B—H15D110.1
C13A—C14A—H14B109.5C16B—C15B—H15D110.1
H14A—C14A—H14B109.5H15C—C15B—H15D108.5
C13A—C14A—H14C109.5F2BB—C16B—F3BB109.42 (13)
H14A—C14A—H14C109.5F2BB—C16B—F1BB109.35 (13)
H14B—C14A—H14C109.5F3BB—C16B—F1BB109.33 (13)
O1A—C15A—C16A106.7 (3)F2BB—C16B—F3B127.6 (2)
O1A—C15A—H15A110.4F3BB—C16B—F3B87.8 (2)
C16A—C15A—H15A110.4F3BB—C16B—F1B140.7 (2)
O1A—C15A—H15B110.4F1BB—C16B—F1B86.25 (16)
C16A—C15A—H15B110.4F3B—C16B—F1B109.20 (12)
H15A—C15A—H15B108.6F2BB—C16B—F2B77.19 (18)
F3AA—C16A—F2AA109.73 (12)F1BB—C16B—F2B123.6 (2)
F3AA—C16A—F1A85.21 (19)F3B—C16B—F2B109.08 (12)
F2AA—C16A—F1A129.6 (2)F1B—C16B—F2B109.06 (12)
F3AA—C16A—F2A128.2 (2)F2BB—C16B—C15B116.2 (3)
F1A—C16A—F2A109.42 (12)F3BB—C16B—C15B99.7 (3)
F2AA—C16A—F3A86.66 (18)F1BB—C16B—C15B112.3 (3)
F1A—C16A—F3A109.40 (13)F3B—C16B—C15B108.5 (2)
F2A—C16A—F3A109.00 (12)F1B—C16B—C15B107.4 (2)
F3AA—C16A—F1AA109.29 (12)F2B—C16B—C15B113.5 (2)
C6—C1—C2—O2178.1 (2)C11A—C12A—C13A—C14A−179.5 (3)
Cl1—C1—C2—O22.0 (3)N3A—C9A—C13A—C12A0.7 (4)
C6—C1—C2—C3−1.3 (3)C8A—C9A—C13A—C12A−178.2 (2)
Cl1—C1—C2—C3−177.35 (14)N3A—C9A—C13A—C14A−179.9 (3)
O2—C2—C3—O33.1 (3)C8A—C9A—C13A—C14A1.2 (4)
C1—C2—C3—O3−177.56 (19)C12A—O1A—C15A—C16A177.9 (2)
O2—C2—C3—C4−177.9 (2)O1A—C15A—C16A—F3AA175.1 (3)
C1—C2—C3—C41.5 (3)O1A—C15A—C16A—F2AA−64.9 (4)
O3—C3—C4—C5175.6 (2)O1A—C15A—C16A—F1A84.2 (4)
C2—C3—C4—C5−3.4 (3)O1A—C15A—C16A—F2A−38.0 (4)
O3—C3—C4—Cl20.4 (3)O1A—C15A—C16A—F3A−157.8 (3)
C2—C3—C4—Cl2−178.54 (14)O1A—C15A—C16A—F1AA56.2 (4)
C3—C4—C5—O5−175.9 (2)C2B—N1B—C1B—N2B0.2 (3)
Cl2—C4—C5—O5−0.8 (3)C2B—N1B—C1B—S1B−177.41 (16)
C3—C4—C5—C64.6 (3)C7B—N2B—C1B—N1B−0.1 (2)
Cl2—C4—C5—C6179.79 (14)C7B—N2B—C1B—S1B177.27 (18)
C2—C1—C6—O6−176.2 (2)C8B—S1B—C1B—N1B−165.94 (18)
Cl1—C1—C6—O6−0.1 (3)C8B—S1B—C1B—N2B17.0 (2)
C2—C1—C6—C52.5 (3)C1B—N1B—C2B—C3B179.3 (3)
Cl1—C1—C6—C5178.64 (14)C1B—N1B—C2B—C7B−0.3 (3)
O5—C5—C6—O6−4.7 (3)N1B—C2B—C3B—C4B−180.0 (3)
C4—C5—C6—O6174.79 (19)C7B—C2B—C3B—C4B−0.3 (5)
O5—C5—C6—C1176.48 (19)C2B—C3B—C4B—C5B−0.3 (6)
C4—C5—C6—C1−4.0 (3)C3B—C4B—C5B—C6B0.8 (7)
C7A—N2A—C1A—N1A0.5 (2)C4B—C5B—C6B—C7B−0.6 (6)
C7A—N2A—C1A—S1A−178.46 (17)C5B—C6B—C7B—N2B179.9 (3)
C2A—N1A—C1A—N2A−0.1 (2)C5B—C6B—C7B—C2B0.0 (5)
C2A—N1A—C1A—S1A178.96 (15)C1B—N2B—C7B—C6B179.9 (3)
C8A—S1A—C1A—N2A0.0 (2)C1B—N2B—C7B—C2B−0.1 (3)
C8A—S1A—C1A—N1A−178.86 (18)N1B—C2B—C7B—C6B−179.8 (2)
C1A—N1A—C2A—C3A179.8 (3)C3B—C2B—C7B—C6B0.5 (4)
C1A—N1A—C2A—C7A−0.3 (2)N1B—C2B—C7B—N2B0.3 (3)
N1A—C2A—C3A—C4A178.8 (3)C3B—C2B—C7B—N2B−179.4 (3)
C7A—C2A—C3A—C4A−1.0 (4)C1B—S1B—C8B—C9B178.68 (17)
C2A—C3A—C4A—C5A−0.4 (5)C10B—N3B—C9B—C13B−1.3 (4)
C3A—C4A—C5A—C6A1.4 (6)C10B—N3B—C9B—C8B179.5 (3)
C4A—C5A—C6A—C7A−0.9 (5)S1B—C8B—C9B—N3B−2.7 (3)
C1A—N2A—C7A—C6A178.2 (3)S1B—C8B—C9B—C13B178.04 (19)
C1A—N2A—C7A—C2A−0.7 (2)C9B—N3B—C10B—C11B2.5 (5)
C5A—C6A—C7A—N2A−179.2 (3)N3B—C10B—C11B—C12B−0.8 (5)
C5A—C6A—C7A—C2A−0.5 (4)C15B—O1B—C12B—C13B163.0 (3)
N1A—C2A—C7A—N2A0.6 (2)C15B—O1B—C12B—C11B−17.4 (4)
C3A—C2A—C7A—N2A−179.5 (2)C10B—C11B—C12B—O1B178.1 (3)
N1A—C2A—C7A—C6A−178.4 (2)C10B—C11B—C12B—C13B−2.4 (5)
C3A—C2A—C7A—C6A1.5 (4)O1B—C12B—C13B—C9B−177.0 (2)
C1A—S1A—C8A—C9A171.22 (17)C11B—C12B—C13B—C9B3.4 (4)
C10A—N3A—C9A—C13A−0.6 (4)O1B—C12B—C13B—C14B3.7 (4)
C10A—N3A—C9A—C8A178.4 (2)C11B—C12B—C13B—C14B−175.8 (3)
S1A—C8A—C9A—N3A10.6 (3)N3B—C9B—C13B—C12B−1.6 (4)
S1A—C8A—C9A—C13A−170.4 (2)C8B—C9B—C13B—C12B177.5 (2)
C9A—N3A—C10A—C11A−0.2 (4)N3B—C9B—C13B—C14B177.6 (3)
N3A—C10A—C11A—C12A0.8 (5)C8B—C9B—C13B—C14B−3.3 (4)
C15A—O1A—C12A—C11A10.1 (5)C12B—O1B—C15B—C16B−156.3 (2)
C15A—O1A—C12A—C13A−170.4 (3)O1B—C15B—C16B—F2BB34.4 (4)
C10A—C11A—C12A—O1A178.9 (3)O1B—C15B—C16B—F3BB−82.9 (3)
C10A—C11A—C12A—C13A−0.6 (4)O1B—C15B—C16B—F1BB161.4 (2)
O1A—C12A—C13A—C9A−179.6 (2)O1B—C15B—C16B—F3B−173.8 (2)
C11A—C12A—C13A—C9A−0.1 (4)O1B—C15B—C16B—F1B68.3 (3)
O1A—C12A—C13A—C14A0.9 (4)O1B—C15B—C16B—F2B−52.4 (3)
D—H···AD—HH···AD···AD—H···A
N1A—H1AA···O30.861.952.749 (2)155
N1A—H1AA···Cl20.862.963.5169 (18)125
N2A—H2AA···O5i0.861.912.737 (2)160
N1B—H1BA···O20.861.892.717 (2)160
N2B—H2BA···O6i0.861.962.766 (2)155
C8A—H8AB···O5i0.972.503.195 (3)127
C8B—H8BA···O6i0.972.453.289 (3)145
C6B—H6BA···F3AAii0.932.493.104 (5)124
Cg···CgD···A
Cg1···Cg4i3.8187 (13)
Cg2···Cg2ii3.5631 (15)
Cg2···Cg5i3.7434 (17)
Cg3···Cg6i3.842 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H1AA⋯O30.861.952.749 (2)155
N1A—H1AA⋯Cl20.862.963.5169 (18)125
N2A—H2AA⋯O5i0.861.912.737 (2)160
N1B—H1BA⋯O20.861.892.717 (2)160
N2B—H2BA⋯O6i0.861.962.766 (2)155
C8A—H8AB⋯O5i0.972.503.195 (3)127
C8B—H8BA⋯O6i0.972.453.289 (3)145
C6B—H6BA⋯F3AAii0.932.493.104 (5)124

Symmetry codes: (i) ; (ii) .

  4 in total

1.  Lansoprazole, a novel benzimidazole proton pump inhibitor, and its related compounds have selective activity against Helicobacter pylori.

Authors:  T Iwahi; H Satoh; M Nakao; T Iwasaki; T Yamazaki; K Kubo; T Tamura; A Imada
Journal:  Antimicrob Agents Chemother       Date:  1991-03       Impact factor: 5.191

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Redetermination of pyridine-4-carbonitrile-chloranilic acid (1/1) at 180 K.

Authors:  Kazuma Gotoh; Hirokazu Nagoshi; Hiroyuki Ishida
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-06-13

4.  Ethylammonium and diethylammonium salts of chloranilic acid.

Authors:  H Ishida; S Kashino
Journal:  Acta Crystallogr C       Date:  2000-05-15       Impact factor: 1.172

  4 in total
  4 in total

1.  2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole monohydrate: a monoclinic polymorph.

Authors:  Yu-Feng Chen; Jin-Yao Chen; Ming-Huang Hong; Jie Lu; Guo-Bin Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

2.  2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole monohydrate.

Authors:  Guo-Bin Ren; Ming-Huang Hong; Jia-Liang Zhong; Dong-Xu Yi; Le-Hui Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-01-08

3.  2-{[3-Methyl-4-(2,2,2-trifluoro-eth-oxy)pyridin-2-yl]methyl-sulfan-yl}-1H-benzimidazole propan-2-ol monosolvate: a second monoclinic polymorph.

Authors:  Jin-Ju Ma; Ming-Hui Qi; Ming-Huang Hong; Jie Lu; Guo-Bin Ren
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13

4.  Triprolidinium dichloranilate-chloranilic acid-methanol-water (2/1/2/2).

Authors:  A S Dayananda; Ray J Butcher; Mehmet Akkurt; H S Yathirajan; B Narayana
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-10
  4 in total

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