Literature DB >> 21522799

1,4-Bis(1H-benzimidazol-2-yl)benzene methanol monosolvate.

Jiang-Bo Su1, Shen Lin, Li-Juan Chen, Ming-Xing Yang, Hua Huang.   

Abstract

The asymmetric unit of the title compound, C(20)H(14)N(4)·CH(4)O, contains two independent half-mol-ecules, each located on an inversion centre, and a methanol solvent mol-ecule. The benzimidazolyl groups form different dihedral angles [24.0 (1) and 11.6 (1)°] with the plane of the central benzene ring in the two mol-ecules. In the crystal, a two-dimensional network is formed through N-H⋯ N, N-H⋯O and O-H⋯N hydrogen-bonding inter-actions between the benzimidazole units and methanol solvent mol-ecules. π-π stacking inter-actions also occur between the benzimidazole rings of adjacent mol-ecules, with centroid-centroid distances of 3.720 (14) Å and inter-planar distances of 3.53 (1) Å .

Entities:  

Year:  2010        PMID: 21522799      PMCID: PMC3050263          DOI: 10.1107/S1600536810049238

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of the title compound see: Wu et al. (2009 ▶). For the properties and applications of benzimidazoles, see: Tidwell et al. (1993 ▶); Salunke et al. (1994 ▶); Hoorn et al. (1995 ▶); van Berkel et al. (1995 ▶); Dinolfo et al. (2005 ▶); Yang et al. (2008 ▶). For structures of 1,4-bis­(benzimidazol-2-yl)benzene analogues, see: Bei et al. (2000 ▶); Wu et al. (2009 ▶). For bond lengths and angles in similar structures, see: Matthews et al. (1996 ▶); Ozbey et al. (1998 ▶).

Experimental

Crystal data

C20H14N4·CH4O M = 342.39 Triclinic, a = 7.1730 (14) Å b = 10.599 (2) Å c = 12.260 (3) Å α = 76.21 (3)° β = 88.37 (3)° γ = 77.01 (3)° V = 881.7 (3) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 293 K 0.31 × 0.16 × 0.12 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2002 ▶) T min = 0.432, T max = 1.000 4565 measured reflections 3139 independent reflections 2577 reflections with I > 2σ(I) R int = 0.016

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.119 S = 1.04 3139 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL/PC (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810049238/bg2370sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810049238/bg2370Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14N4·CH4OZ = 2
Mr = 342.39F(000) = 360
Triclinic, P1Dx = 1.290 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1730 (14) ÅCell parameters from 3188 reflections
b = 10.599 (2) Åθ = 3.0–27.5°
c = 12.260 (3) ŵ = 0.08 mm1
α = 76.21 (3)°T = 293 K
β = 88.37 (3)°Prism, yellow
γ = 77.01 (3)°0.31 × 0.16 × 0.12 mm
V = 881.7 (3) Å3
Rigaku Mercury CCD diffractometer3139 independent reflections
Radiation source: fine-focus sealed tube2577 reflections with I > 2σ(I)
graphiteRint = 0.016
ω scansθmax = 25.2°, θmin = 1.7°
Absorption correction: multi-scan (CrystalClear; Rigaku, 2002)h = −8→8
Tmin = 0.432, Tmax = 1.000k = −12→11
4565 measured reflectionsl = −12→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.119H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.058P)2 + 0.2072P] where P = (Fo2 + 2Fc2)/3
3139 reflections(Δ/σ)max = 0.001
240 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.4353 (2)0.72851 (15)−0.20907 (11)0.0655 (4)
H10.466 (4)0.773 (3)−0.157 (2)0.099 (9)*
N10.5137 (2)0.81332 (14)−0.01667 (11)0.0462 (4)
N20.4593 (2)0.81243 (13)0.16469 (11)0.0431 (4)
H2A0.39990.82850.22360.052*
N30.3135 (2)0.86666 (13)0.37352 (11)0.0404 (3)
N40.34446 (19)0.84695 (13)0.55855 (11)0.0388 (3)
H4A0.37310.81060.62830.047*
C10.6775 (3)0.74325 (16)0.04753 (14)0.0438 (4)
C20.8563 (3)0.67915 (19)0.01578 (17)0.0569 (5)
H2B0.88180.6801−0.05920.068*
C30.9931 (3)0.6147 (2)0.09908 (19)0.0624 (6)
H3B1.11260.57170.07950.075*
C40.9576 (3)0.61209 (19)0.21223 (18)0.0584 (5)
H4B1.05360.56700.26600.070*
C50.7826 (3)0.67513 (18)0.24601 (16)0.0502 (5)
H5A0.75840.67330.32120.060*
C60.6448 (2)0.74142 (16)0.16162 (14)0.0412 (4)
C70.3870 (3)0.85267 (16)0.05676 (13)0.0403 (4)
C80.1892 (2)0.92809 (15)0.02858 (13)0.0394 (4)
C90.1321 (3)0.98685 (17)−0.08376 (14)0.0456 (4)
H9A0.22040.9784−0.14010.055*
C10−0.0540 (3)1.05739 (17)−0.11194 (13)0.0451 (4)
H10A−0.08961.0955−0.18700.068*
C110.2500 (2)0.99128 (16)0.39671 (14)0.0394 (4)
C120.1739 (3)1.11565 (18)0.32434 (16)0.0541 (5)
H12A0.16471.12520.24720.065*
C130.1133 (3)1.22324 (18)0.37161 (18)0.0590 (5)
H13A0.06131.30650.32540.071*
C140.1282 (3)1.21002 (18)0.48749 (18)0.0551 (5)
H14A0.08441.28460.51640.066*
C150.2059 (3)1.08975 (17)0.55992 (16)0.0484 (4)
H15A0.21731.08160.63680.058*
C160.2667 (2)0.98057 (16)0.51249 (13)0.0379 (4)
C170.3672 (2)0.78377 (15)0.47268 (13)0.0358 (4)
C180.4362 (2)0.63846 (15)0.48859 (13)0.0356 (4)
C190.5493 (2)0.55926 (16)0.58125 (13)0.0421 (4)
H19C0.58290.59820.63600.063*
C200.3879 (3)0.57685 (16)0.40750 (14)0.0426 (4)
H20B0.31250.62810.34520.064*
C210.3492 (5)0.6260 (3)−0.1553 (2)0.0971 (9)
H21A0.26850.6545−0.09790.117*
H21B0.44810.5516−0.11900.117*
H21C0.27390.5965−0.20430.174 (16)*
U11U22U33U12U13U23
O10.1004 (12)0.0687 (9)0.0363 (7)−0.0341 (8)0.0012 (7)−0.0157 (7)
N10.0571 (9)0.0468 (8)0.0349 (8)−0.0070 (7)−0.0014 (7)−0.0143 (6)
N20.0505 (9)0.0457 (8)0.0305 (7)−0.0023 (7)−0.0035 (6)−0.0115 (6)
N30.0500 (8)0.0365 (7)0.0327 (7)−0.0029 (6)−0.0045 (6)−0.0097 (6)
N40.0495 (8)0.0389 (8)0.0280 (7)−0.0082 (6)−0.0005 (6)−0.0093 (6)
C10.0525 (11)0.0401 (9)0.0406 (9)−0.0095 (8)0.0004 (8)−0.0138 (7)
C20.0608 (13)0.0566 (12)0.0539 (12)−0.0086 (10)0.0084 (10)−0.0195 (9)
C30.0517 (12)0.0574 (12)0.0775 (15)−0.0048 (10)0.0052 (11)−0.0226 (11)
C40.0532 (12)0.0514 (11)0.0690 (14)−0.0085 (9)−0.0142 (10)−0.0125 (10)
C50.0556 (12)0.0501 (11)0.0451 (10)−0.0100 (9)−0.0089 (8)−0.0126 (8)
C60.0481 (10)0.0373 (9)0.0392 (9)−0.0085 (7)−0.0028 (7)−0.0117 (7)
C70.0546 (10)0.0354 (8)0.0315 (8)−0.0086 (7)−0.0031 (7)−0.0100 (7)
C80.0524 (10)0.0336 (8)0.0320 (9)−0.0073 (7)−0.0060 (7)−0.0087 (7)
C90.0550 (11)0.0481 (10)0.0310 (9)−0.0064 (8)0.0005 (7)−0.0090 (7)
C100.0585 (11)0.0451 (10)0.0281 (8)−0.0057 (8)−0.0069 (8)−0.0063 (7)
C110.0417 (9)0.0366 (9)0.0400 (9)−0.0066 (7)−0.0033 (7)−0.0108 (7)
C120.0682 (13)0.0429 (10)0.0471 (11)−0.0068 (9)−0.0139 (9)−0.0063 (8)
C130.0660 (13)0.0350 (10)0.0711 (14)−0.0029 (9)−0.0159 (10)−0.0092 (9)
C140.0553 (12)0.0420 (10)0.0718 (14)−0.0055 (9)−0.0010 (10)−0.0254 (9)
C150.0542 (11)0.0471 (10)0.0491 (10)−0.0115 (8)0.0049 (8)−0.0222 (8)
C160.0392 (9)0.0377 (9)0.0386 (9)−0.0096 (7)0.0021 (7)−0.0118 (7)
C170.0380 (9)0.0388 (9)0.0313 (8)−0.0075 (7)−0.0006 (6)−0.0109 (7)
C180.0380 (9)0.0366 (8)0.0313 (8)−0.0063 (7)−0.0011 (7)−0.0082 (7)
C190.0541 (11)0.0405 (9)0.0332 (9)−0.0089 (8)−0.0084 (7)−0.0122 (7)
C200.0526 (10)0.0392 (9)0.0337 (9)−0.0063 (8)−0.0122 (7)−0.0064 (7)
C210.141 (3)0.107 (2)0.0643 (16)−0.072 (2)0.0164 (16)−0.0224 (15)
O1—C211.391 (3)C9—C101.384 (3)
O1—H10.93 (3)C9—H9A0.9300
N1—C71.331 (2)C10—C8i1.400 (2)
N1—C11.391 (2)C10—H10A0.9300
N2—C71.368 (2)C11—C161.403 (2)
N2—C61.378 (2)C11—C121.403 (2)
N2—H2A0.8600C12—C131.380 (3)
N3—C171.328 (2)C12—H12A0.9300
N3—C111.391 (2)C13—C141.399 (3)
N4—C171.3640 (19)C13—H13A0.9300
N4—C161.385 (2)C14—C151.376 (3)
N4—H4A0.8600C14—H14A0.9300
C1—C21.401 (3)C15—C161.395 (2)
C1—C61.408 (2)C15—H15A0.9300
C2—C31.377 (3)C17—C181.475 (2)
C2—H2B0.9300C18—C191.395 (2)
C3—C41.398 (3)C18—C201.402 (2)
C3—H3B0.9300C19—C20ii1.386 (2)
C4—C51.385 (3)C19—H19C0.9300
C4—H4B0.9300C20—C19ii1.386 (2)
C5—C61.393 (2)C20—H20B0.9300
C5—H5A0.9300C21—H21A0.9600
C7—C81.469 (2)C21—H21B0.9600
C8—C10i1.400 (2)C21—H21C0.9600
C8—C91.400 (2)
C21—O1—H1109.8 (16)C8i—C10—H10A119.7
C7—N1—C1104.98 (14)N3—C11—C16110.02 (14)
C7—N2—C6107.32 (14)N3—C11—C12130.11 (16)
C7—N2—H2A126.3C16—C11—C12119.85 (16)
C6—N2—H2A126.3C13—C12—C11117.72 (18)
C17—N3—C11104.91 (13)C13—C12—H12A121.1
C17—N4—C16107.26 (13)C11—C12—H12A121.1
C17—N4—H4A126.4C12—C13—C14121.53 (18)
C16—N4—H4A126.4C12—C13—H13A119.2
N1—C1—C2130.63 (17)C14—C13—H13A119.2
N1—C1—C6109.80 (15)C15—C14—C13121.84 (17)
C2—C1—C6119.57 (17)C15—C14—H14A119.1
C3—C2—C1117.88 (19)C13—C14—H14A119.1
C3—C2—H2B121.1C14—C15—C16116.80 (17)
C1—C2—H2B121.1C14—C15—H15A121.6
C2—C3—C4121.92 (19)C16—C15—H15A121.6
C2—C3—H3B119.0N4—C16—C15132.62 (16)
C4—C3—H3B119.0N4—C16—C11105.12 (14)
C5—C4—C3121.46 (19)C15—C16—C11122.22 (16)
C5—C4—H4B119.3N3—C17—N4112.68 (14)
C3—C4—H4B119.3N3—C17—C18123.53 (14)
C4—C5—C6116.64 (18)N4—C17—C18123.74 (14)
C4—C5—H5A121.7C19—C18—C20118.34 (15)
C6—C5—H5A121.7C19—C18—C17122.54 (14)
N2—C6—C5132.09 (16)C20—C18—C17119.12 (14)
N2—C6—C1105.38 (15)C20ii—C19—C18120.63 (15)
C5—C6—C1122.52 (17)C20ii—C19—H19C119.7
N1—C7—N2112.51 (15)C18—C19—H19C119.7
N1—C7—C8125.12 (15)C19ii—C20—C18121.03 (15)
N2—C7—C8122.36 (15)C19ii—C20—H20B119.5
C10i—C8—C9118.54 (16)C18—C20—H20B119.5
C10i—C8—C7121.45 (15)O1—C21—H21A109.0
C9—C8—C7120.00 (16)O1—C21—H21B108.1
C10—C9—C8120.80 (16)H21A—C21—H21B107.6
C10—C9—H9A119.6O1—C21—H21C114.6
C8—C9—H9A119.6H21A—C21—H21C108.7
C9—C10—C8i120.66 (15)H21B—C21—H21C108.7
C9—C10—H10A119.7
D—H···AD—HH···AD···AD—H···A
O1—H1···N10.93 (3)1.93 (3)2.829 (2)162 (2)
N2—H2A···N30.862.032.873 (2)168.
N4—H4A···O1iii0.861.992.855 (2)179.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯N10.93 (3)1.93 (3)2.829 (2)162 (2)
N2—H2A⋯N30.862.032.873 (2)168
N4—H4A⋯O1i0.861.992.855 (2)179

Symmetry code: (i) .

  5 in total

1.  1,4-bis(2-benzimidazolyl)benzene

Authors: 
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2.  C- and Z-shaped coordination compounds. synthesis, structure, and spectroelectrochemistry of cis- and trans-[Re(CO)3(L)]2-2,2'-bisbenzimidizolate with L = 4-phenylpyridine, 2,4'-bipyridine, or pyridine.

Authors:  Peter H Dinolfo; Kurt D Benkstein; Charlotte L Stern; Joseph T Hupp
Journal:  Inorg Chem       Date:  2005-11-28       Impact factor: 5.165

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Activity of cationically substituted bis-benzimidazoles against experimental Pneumocystis carinii pneumonia.

Authors:  R R Tidwell; S K Jones; N A Naiman; L C Berger; W B Brake; C C Dykstra; J E Hall
Journal:  Antimicrob Agents Chemother       Date:  1993-08       Impact factor: 5.191

5.  1,4-Bis(benzimidazol-2-yl)benzene dimethyl-formamide disolvate.

Authors:  De-Hong Wu; Ling Hu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-02-13
  5 in total
  1 in total

1.  A third polymorph of 1,4-bis-(1H-benzimid-azol-2-yl)benzene.

Authors:  Wei-Wei Fu; Yan-Fei Liang; Yang Liu; Xiao-Ming Zhu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-05-24
  1 in total

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