Literature DB >> 21582185

1,4-Bis(benzimidazol-2-yl)benzene dimethyl-formamide disolvate.

De-Hong Wu1, Ling Hu.   

Abstract

The aromatic mol-ecule of the title compound, C(20)H(14)N(4)·2C(3)H(7)NO, occupies a special position on an inversion center. The benzimidazole unit (planar to within 0.008 Å) forms a dihedral angle of 9.1 (2)° with the central benzene ring. The benzimidazole H atom participates in a hydrogen bond with the dimethyl-formamide solvent molecule, thus giving rise to the title 1:2 aggregate. These aggregates are further linked in the crystal structure by aromatic π-π stacking inter-actions [centroid-centroid distance = 6.356 (2) Å].

Entities:  

Year:  2009        PMID: 21582185      PMCID: PMC2968526          DOI: 10.1107/S1600536809004759

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background literature concerning benzimidazole compounds, see: Zarrinmayeh et al. (1998 ▶); Gallagher et al. (2001 ▶); Howarth & Hanlon (2001 ▶). For the unsolvated structure, see: Bei et al. (2000 ▶); Dudd et al. (2003 ▶).

Experimental

Crystal data

C20H14N4·2C3H7NO M = 456.54 Monoclinic, a = 6.3556 (13) Å b = 20.931 (2) Å c = 9.0097 (18) Å β = 98.26 (2)° V = 1186.1 (4) Å3 Z = 2 Mo Kα radiation μ = 0.08 mm−1 T = 291 K 0.32 × 0.26 × 0.24 mm

Data collection

Rigaku Mercury2 diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.970, T max = 0.990 12310 measured reflections 2723 independent reflections 1718 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.158 S = 1.00 2723 reflections 154 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.21 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809004759/ya2086sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809004759/ya2086Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H14N4·2C3H7NOF(000) = 484
Mr = 456.54Dx = 1.278 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 9216 reflections
a = 6.3556 (13) Åθ = 3.0–27.7°
b = 20.931 (2) ŵ = 0.08 mm1
c = 9.0097 (18) ÅT = 291 K
β = 98.26 (2)°Block, yellow
V = 1186.1 (4) Å30.32 × 0.26 × 0.24 mm
Z = 2
Rigaku Mercury2 diffractometer2723 independent reflections
Radiation source: fine-focus sealed tube1718 reflections with I > 2σ(I)
graphiteRint = 0.054
Detector resolution: 13.6612 pixels mm-1θmax = 27.5°, θmin = 3.0°
CCD profile fitting scansh = −8→8
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −27→27
Tmin = 0.970, Tmax = 0.990l = −11→11
12310 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.158H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.0615P)2 + 0.4757P] where P = (Fo2 + 2Fc2)/3
2723 reflections(Δ/σ)max < 0.001
154 parametersΔρmax = 0.24 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.4424 (3)0.03145 (10)0.6222 (2)0.0442 (5)
H1A0.40270.05270.70450.053*
C20.6334 (3)0.04722 (9)0.5722 (2)0.0394 (5)
C30.6877 (3)0.01491 (10)0.4482 (2)0.0454 (5)
H3A0.81400.02490.41260.054*
C40.7705 (3)0.09548 (9)0.6530 (2)0.0396 (5)
C50.9076 (3)0.16201 (10)0.8206 (2)0.0431 (5)
C61.0397 (3)0.16157 (9)0.7099 (2)0.0425 (5)
C71.2235 (4)0.19770 (11)0.7212 (3)0.0563 (6)
H7A1.31190.19660.64740.068*
C81.2694 (4)0.23526 (12)0.8464 (3)0.0655 (7)
H8A1.39140.26040.85750.079*
C91.1379 (4)0.23673 (12)0.9574 (3)0.0638 (7)
H9A1.17340.26301.04040.077*
C100.9577 (4)0.20035 (11)0.9471 (3)0.0578 (6)
H10A0.87130.20121.02210.069*
C110.7511 (4)0.87860 (14)0.7174 (3)0.0663 (7)
H11A0.66680.84860.66070.080*
C120.7988 (5)0.95068 (16)0.9240 (3)0.0905 (10)
H12A0.93050.95840.88650.136*
H12B0.82770.93571.02550.136*
H12C0.71870.98970.92100.136*
C130.4746 (5)0.88579 (18)0.8728 (4)0.0984 (11)
H13A0.40930.85400.80420.148*
H13B0.38500.92290.86810.148*
H13C0.49370.86890.97280.148*
N10.7398 (3)0.12012 (9)0.78322 (19)0.0470 (5)
N20.9489 (3)0.11884 (8)0.60413 (19)0.0442 (4)
H2A0.99570.10870.52230.053*
N30.6781 (3)0.90317 (9)0.8324 (2)0.0526 (5)
O10.9230 (3)0.89199 (11)0.6780 (2)0.0845 (6)
U11U22U33U12U13U23
C10.0431 (11)0.0534 (13)0.0382 (11)0.0016 (10)0.0135 (9)−0.0061 (9)
C20.0390 (11)0.0442 (11)0.0355 (10)0.0044 (9)0.0071 (8)0.0028 (8)
C30.0397 (11)0.0537 (12)0.0451 (12)−0.0003 (10)0.0144 (9)−0.0011 (10)
C40.0386 (11)0.0425 (11)0.0385 (10)0.0033 (9)0.0088 (9)0.0043 (9)
C50.0431 (11)0.0414 (11)0.0457 (12)0.0015 (9)0.0088 (9)0.0011 (9)
C60.0441 (11)0.0398 (11)0.0440 (11)0.0015 (9)0.0080 (9)0.0061 (9)
C70.0494 (13)0.0570 (14)0.0655 (15)−0.0081 (11)0.0183 (11)0.0020 (12)
C80.0543 (15)0.0584 (15)0.0827 (19)−0.0146 (12)0.0066 (13)−0.0018 (13)
C90.0672 (16)0.0582 (15)0.0649 (16)−0.0106 (13)0.0052 (13)−0.0125 (12)
C100.0635 (15)0.0580 (14)0.0537 (14)−0.0070 (12)0.0146 (12)−0.0107 (11)
C110.0706 (17)0.0797 (18)0.0501 (14)0.0029 (14)0.0129 (13)−0.0001 (13)
C120.112 (3)0.085 (2)0.0701 (19)0.0047 (19)−0.0020 (18)−0.0122 (16)
C130.078 (2)0.126 (3)0.101 (2)−0.001 (2)0.0443 (19)0.023 (2)
N10.0467 (10)0.0530 (10)0.0439 (10)−0.0042 (8)0.0158 (8)−0.0052 (8)
N20.0454 (10)0.0488 (10)0.0414 (9)−0.0018 (8)0.0166 (8)−0.0012 (8)
N30.0540 (11)0.0625 (12)0.0438 (10)0.0004 (9)0.0153 (9)0.0007 (9)
O10.0695 (12)0.1293 (18)0.0613 (12)0.0077 (12)0.0318 (10)0.0092 (11)
C1—C3i1.370 (3)C8—H8A0.9300
C1—C21.394 (3)C9—C101.367 (3)
C1—H1A0.9300C9—H9A0.9300
C2—C31.391 (3)C10—H10A0.9300
C2—C41.459 (3)C11—O11.229 (3)
C3—C1i1.370 (3)C11—N31.300 (3)
C3—H3A0.9300C11—H11A0.9300
C4—N11.322 (2)C12—N31.441 (3)
C4—N21.364 (2)C12—H12A0.9600
C5—N11.384 (3)C12—H12B0.9600
C5—C101.393 (3)C12—H12C0.9600
C5—C61.393 (3)C13—N31.440 (3)
C6—N21.372 (3)C13—H13A0.9600
C6—C71.383 (3)C13—H13B0.9600
C7—C81.372 (4)C13—H13C0.9600
C7—H7A0.9300N2—H2A0.8600
C8—C91.393 (4)
C3i—C1—C2120.91 (18)C8—C9—H9A119.3
C3i—C1—H1A119.5C9—C10—C5117.9 (2)
C2—C1—H1A119.5C9—C10—H10A121.1
C3—C2—C1118.20 (19)C5—C10—H10A121.1
C3—C2—C4122.55 (18)O1—C11—N3125.0 (3)
C1—C2—C4119.23 (17)O1—C11—H11A117.5
C1i—C3—C2120.89 (19)N3—C11—H11A117.5
C1i—C3—H3A119.6N3—C12—H12A109.5
C2—C3—H3A119.6N3—C12—H12B109.5
N1—C4—N2112.48 (18)H12A—C12—H12B109.5
N1—C4—C2124.01 (18)N3—C12—H12C109.5
N2—C4—C2123.48 (17)H12A—C12—H12C109.5
N1—C5—C10129.9 (2)H12B—C12—H12C109.5
N1—C5—C6110.11 (18)N3—C13—H13A109.5
C10—C5—C6120.0 (2)N3—C13—H13B109.5
N2—C6—C7132.4 (2)H13A—C13—H13B109.5
N2—C6—C5105.38 (17)N3—C13—H13C109.5
C7—C6—C5122.2 (2)H13A—C13—H13C109.5
C8—C7—C6116.9 (2)H13B—C13—H13C109.5
C8—C7—H7A121.6C4—N1—C5104.84 (16)
C6—C7—H7A121.6C4—N2—C6107.19 (16)
C7—C8—C9121.6 (2)C4—N2—H2A126.4
C7—C8—H8A119.2C6—N2—H2A126.4
C9—C8—H8A119.2C11—N3—C13122.5 (3)
C10—C9—C8121.5 (2)C11—N3—C12120.5 (2)
C10—C9—H9A119.3C13—N3—C12117.0 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1ii0.861.952.787 (3)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O1i0.861.952.787 (3)165

Symmetry code: (i) .

  4 in total

1.  1,4-bis(2-benzimidazolyl)benzene

Authors: 
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2.  A short history of SHELX.

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3.  Intermolecular interactions in two (ferrocenylmethyl)benzimidazoles incorporating the 4-MeOC6H4 and 3,4-(MeO)2C6H3 groups: analysis of MeO-C-C distortions from ideal 120 degrees geometry.

Authors:  J F Gallagher; K Hanlon; J Howarth
Journal:  Acta Crystallogr C       Date:  2001-12-06       Impact factor: 1.172

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Authors:  H Zarrinmayeh; A M Nunes; P L Ornstein; D M Zimmerman; M B Arnold; D A Schober; S L Gackenheimer; R F Bruns; P A Hipskind; T C Britton; B E Cantrell; D R Gehlert
Journal:  J Med Chem       Date:  1998-07-16       Impact factor: 7.446

  4 in total
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2.  A third polymorph of 1,4-bis-(1H-benzimid-azol-2-yl)benzene.

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  2 in total

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