| Literature DB >> 21582185 |
Abstract
The aromatic mol-ecule of the title compound, C(20)H(14)N(4)·2C(3)H(7)NO, occupies a special position on an inversion center. The benzimidazole unit (planar to within 0.008 Å) forms a dihedral angle of 9.1 (2)° with the central benzene ring. The benzimidazole H atom participates in a hydrogen bond with the dimethyl-formamide solvent molecule, thus giving rise to the title 1:2 aggregate. These aggregates are further linked in the crystal structure by aromatic π-π stacking inter-actions [centroid-centroid distance = 6.356 (2) Å].Entities:
Year: 2009 PMID: 21582185 PMCID: PMC2968526 DOI: 10.1107/S1600536809004759
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C20H14N4·2C3H7NO | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 9216 reflections |
| θ = 3.0–27.7° | |
| µ = 0.08 mm−1 | |
| β = 98.26 (2)° | Block, yellow |
| 0.32 × 0.26 × 0.24 mm | |
| Rigaku Mercury2 diffractometer | 2723 independent reflections |
| Radiation source: fine-focus sealed tube | 1718 reflections with |
| graphite | |
| Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
| CCD profile fitting scans | |
| Absorption correction: multi-scan ( | |
| 12310 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2723 reflections | (Δ/σ)max < 0.001 |
| 154 parameters | Δρmax = 0.24 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.4424 (3) | 0.03145 (10) | 0.6222 (2) | 0.0442 (5) | |
| H1A | 0.4027 | 0.0527 | 0.7045 | 0.053* | |
| C2 | 0.6334 (3) | 0.04722 (9) | 0.5722 (2) | 0.0394 (5) | |
| C3 | 0.6877 (3) | 0.01491 (10) | 0.4482 (2) | 0.0454 (5) | |
| H3A | 0.8140 | 0.0249 | 0.4126 | 0.054* | |
| C4 | 0.7705 (3) | 0.09548 (9) | 0.6530 (2) | 0.0396 (5) | |
| C5 | 0.9076 (3) | 0.16201 (10) | 0.8206 (2) | 0.0431 (5) | |
| C6 | 1.0397 (3) | 0.16157 (9) | 0.7099 (2) | 0.0425 (5) | |
| C7 | 1.2235 (4) | 0.19770 (11) | 0.7212 (3) | 0.0563 (6) | |
| H7A | 1.3119 | 0.1966 | 0.6474 | 0.068* | |
| C8 | 1.2694 (4) | 0.23526 (12) | 0.8464 (3) | 0.0655 (7) | |
| H8A | 1.3914 | 0.2604 | 0.8575 | 0.079* | |
| C9 | 1.1379 (4) | 0.23673 (12) | 0.9574 (3) | 0.0638 (7) | |
| H9A | 1.1734 | 0.2630 | 1.0404 | 0.077* | |
| C10 | 0.9577 (4) | 0.20035 (11) | 0.9471 (3) | 0.0578 (6) | |
| H10A | 0.8713 | 0.2012 | 1.0221 | 0.069* | |
| C11 | 0.7511 (4) | 0.87860 (14) | 0.7174 (3) | 0.0663 (7) | |
| H11A | 0.6668 | 0.8486 | 0.6607 | 0.080* | |
| C12 | 0.7988 (5) | 0.95068 (16) | 0.9240 (3) | 0.0905 (10) | |
| H12A | 0.9305 | 0.9584 | 0.8865 | 0.136* | |
| H12B | 0.8277 | 0.9357 | 1.0255 | 0.136* | |
| H12C | 0.7187 | 0.9897 | 0.9210 | 0.136* | |
| C13 | 0.4746 (5) | 0.88579 (18) | 0.8728 (4) | 0.0984 (11) | |
| H13A | 0.4093 | 0.8540 | 0.8042 | 0.148* | |
| H13B | 0.3850 | 0.9229 | 0.8681 | 0.148* | |
| H13C | 0.4937 | 0.8689 | 0.9728 | 0.148* | |
| N1 | 0.7398 (3) | 0.12012 (9) | 0.78322 (19) | 0.0470 (5) | |
| N2 | 0.9489 (3) | 0.11884 (8) | 0.60413 (19) | 0.0442 (4) | |
| H2A | 0.9957 | 0.1087 | 0.5223 | 0.053* | |
| N3 | 0.6781 (3) | 0.90317 (9) | 0.8324 (2) | 0.0526 (5) | |
| O1 | 0.9230 (3) | 0.89199 (11) | 0.6780 (2) | 0.0845 (6) |
| C1 | 0.0431 (11) | 0.0534 (13) | 0.0382 (11) | 0.0016 (10) | 0.0135 (9) | −0.0061 (9) |
| C2 | 0.0390 (11) | 0.0442 (11) | 0.0355 (10) | 0.0044 (9) | 0.0071 (8) | 0.0028 (8) |
| C3 | 0.0397 (11) | 0.0537 (12) | 0.0451 (12) | −0.0003 (10) | 0.0144 (9) | −0.0011 (10) |
| C4 | 0.0386 (11) | 0.0425 (11) | 0.0385 (10) | 0.0033 (9) | 0.0088 (9) | 0.0043 (9) |
| C5 | 0.0431 (11) | 0.0414 (11) | 0.0457 (12) | 0.0015 (9) | 0.0088 (9) | 0.0011 (9) |
| C6 | 0.0441 (11) | 0.0398 (11) | 0.0440 (11) | 0.0015 (9) | 0.0080 (9) | 0.0061 (9) |
| C7 | 0.0494 (13) | 0.0570 (14) | 0.0655 (15) | −0.0081 (11) | 0.0183 (11) | 0.0020 (12) |
| C8 | 0.0543 (15) | 0.0584 (15) | 0.0827 (19) | −0.0146 (12) | 0.0066 (13) | −0.0018 (13) |
| C9 | 0.0672 (16) | 0.0582 (15) | 0.0649 (16) | −0.0106 (13) | 0.0052 (13) | −0.0125 (12) |
| C10 | 0.0635 (15) | 0.0580 (14) | 0.0537 (14) | −0.0070 (12) | 0.0146 (12) | −0.0107 (11) |
| C11 | 0.0706 (17) | 0.0797 (18) | 0.0501 (14) | 0.0029 (14) | 0.0129 (13) | −0.0001 (13) |
| C12 | 0.112 (3) | 0.085 (2) | 0.0701 (19) | 0.0047 (19) | −0.0020 (18) | −0.0122 (16) |
| C13 | 0.078 (2) | 0.126 (3) | 0.101 (2) | −0.001 (2) | 0.0443 (19) | 0.023 (2) |
| N1 | 0.0467 (10) | 0.0530 (10) | 0.0439 (10) | −0.0042 (8) | 0.0158 (8) | −0.0052 (8) |
| N2 | 0.0454 (10) | 0.0488 (10) | 0.0414 (9) | −0.0018 (8) | 0.0166 (8) | −0.0012 (8) |
| N3 | 0.0540 (11) | 0.0625 (12) | 0.0438 (10) | 0.0004 (9) | 0.0153 (9) | 0.0007 (9) |
| O1 | 0.0695 (12) | 0.1293 (18) | 0.0613 (12) | 0.0077 (12) | 0.0318 (10) | 0.0092 (11) |
| C1—C3i | 1.370 (3) | C8—H8A | 0.9300 |
| C1—C2 | 1.394 (3) | C9—C10 | 1.367 (3) |
| C1—H1A | 0.9300 | C9—H9A | 0.9300 |
| C2—C3 | 1.391 (3) | C10—H10A | 0.9300 |
| C2—C4 | 1.459 (3) | C11—O1 | 1.229 (3) |
| C3—C1i | 1.370 (3) | C11—N3 | 1.300 (3) |
| C3—H3A | 0.9300 | C11—H11A | 0.9300 |
| C4—N1 | 1.322 (2) | C12—N3 | 1.441 (3) |
| C4—N2 | 1.364 (2) | C12—H12A | 0.9600 |
| C5—N1 | 1.384 (3) | C12—H12B | 0.9600 |
| C5—C10 | 1.393 (3) | C12—H12C | 0.9600 |
| C5—C6 | 1.393 (3) | C13—N3 | 1.440 (3) |
| C6—N2 | 1.372 (3) | C13—H13A | 0.9600 |
| C6—C7 | 1.383 (3) | C13—H13B | 0.9600 |
| C7—C8 | 1.372 (4) | C13—H13C | 0.9600 |
| C7—H7A | 0.9300 | N2—H2A | 0.8600 |
| C8—C9 | 1.393 (4) | ||
| C3i—C1—C2 | 120.91 (18) | C8—C9—H9A | 119.3 |
| C3i—C1—H1A | 119.5 | C9—C10—C5 | 117.9 (2) |
| C2—C1—H1A | 119.5 | C9—C10—H10A | 121.1 |
| C3—C2—C1 | 118.20 (19) | C5—C10—H10A | 121.1 |
| C3—C2—C4 | 122.55 (18) | O1—C11—N3 | 125.0 (3) |
| C1—C2—C4 | 119.23 (17) | O1—C11—H11A | 117.5 |
| C1i—C3—C2 | 120.89 (19) | N3—C11—H11A | 117.5 |
| C1i—C3—H3A | 119.6 | N3—C12—H12A | 109.5 |
| C2—C3—H3A | 119.6 | N3—C12—H12B | 109.5 |
| N1—C4—N2 | 112.48 (18) | H12A—C12—H12B | 109.5 |
| N1—C4—C2 | 124.01 (18) | N3—C12—H12C | 109.5 |
| N2—C4—C2 | 123.48 (17) | H12A—C12—H12C | 109.5 |
| N1—C5—C10 | 129.9 (2) | H12B—C12—H12C | 109.5 |
| N1—C5—C6 | 110.11 (18) | N3—C13—H13A | 109.5 |
| C10—C5—C6 | 120.0 (2) | N3—C13—H13B | 109.5 |
| N2—C6—C7 | 132.4 (2) | H13A—C13—H13B | 109.5 |
| N2—C6—C5 | 105.38 (17) | N3—C13—H13C | 109.5 |
| C7—C6—C5 | 122.2 (2) | H13A—C13—H13C | 109.5 |
| C8—C7—C6 | 116.9 (2) | H13B—C13—H13C | 109.5 |
| C8—C7—H7A | 121.6 | C4—N1—C5 | 104.84 (16) |
| C6—C7—H7A | 121.6 | C4—N2—C6 | 107.19 (16) |
| C7—C8—C9 | 121.6 (2) | C4—N2—H2A | 126.4 |
| C7—C8—H8A | 119.2 | C6—N2—H2A | 126.4 |
| C9—C8—H8A | 119.2 | C11—N3—C13 | 122.5 (3) |
| C10—C9—C8 | 121.5 (2) | C11—N3—C12 | 120.5 (2) |
| C10—C9—H9A | 119.3 | C13—N3—C12 | 117.0 (2) |
| H··· | ||||
| N2—H2A···O1ii | 0.86 | 1.95 | 2.787 (3) | 165 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.86 | 1.95 | 2.787 (3) | 165 |
Symmetry code: (i) .