Literature DB >> 21522759

Diphenyl (2-chloro-benzyl-amido)-phosphate.

Mehrdad Pourayoubi, Poorya Zargaran, Arnold L Rheingold, James A Golen.   

Abstract

In the title compound, C(19)H(17)ClNO(3)P, the P atom exhibits a distorted tetra-hedral configuration. In the crystal, pairs of inter-molecular N-H⋯O(P) hydrogen bonds form centrosymmetric dimers.

Entities:  

Year:  2010        PMID: 21522759      PMCID: PMC3050213          DOI: 10.1107/S160053681004955X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Pourayoubi & Zargaran (2010 ▶); Pourayoubi et al. (2010 ▶).

Experimental

Crystal data

C19H17ClNO3P M = 373.76 Triclinic, a = 8.6178 (5) Å b = 9.5901 (6) Å c = 12.1543 (7) Å α = 107.609 (1)° β = 93.882 (1)° γ = 110.036 (1)° V = 882.86 (9) Å3 Z = 2 Mo Kα radiation μ = 0.33 mm−1 T = 100 K 0.40 × 0.35 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.881, T max = 0.923 13560 measured reflections 3982 independent reflections 3681 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.086 S = 1.02 3982 reflections 230 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.28 e Å−3 Δρmin = −0.44 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681004955X/lh5173sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004955X/lh5173Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H17ClNO3PZ = 2
Mr = 373.76F(000) = 388
Triclinic, P1Dx = 1.406 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.6178 (5) ÅCell parameters from 9988 reflections
b = 9.5901 (6) Åθ = 2.4–28.0°
c = 12.1543 (7) ŵ = 0.33 mm1
α = 107.609 (1)°T = 100 K
β = 93.882 (1)°Block, colourless
γ = 110.036 (1)°0.40 × 0.35 × 0.25 mm
V = 882.86 (9) Å3
Bruker APEXII CCD diffractometer3982 independent reflections
Radiation source: fine-focus sealed tube3681 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 28.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −11→10
Tmin = 0.881, Tmax = 0.923k = −11→12
13560 measured reflectionsl = −15→11
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.086H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0396P)2 + 0.4993P] where P = (Fo2 + 2Fc2)/3
3982 reflections(Δ/σ)max = 0.004
230 parametersΔρmax = 0.28 e Å3
0 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl11.12274 (4)0.65811 (4)0.77058 (3)0.02847 (10)
P10.49017 (4)0.15695 (4)0.67814 (3)0.01573 (9)
O10.35884 (12)0.01133 (11)0.59500 (8)0.0201 (2)
O20.44078 (12)0.30686 (11)0.72227 (8)0.01837 (19)
O30.53917 (12)0.14595 (11)0.80359 (8)0.0184 (2)
N10.65627 (15)0.21809 (13)0.62570 (10)0.0194 (2)
C10.97088 (17)0.61883 (16)0.65109 (11)0.0190 (3)
C21.00000 (19)0.72582 (16)0.59229 (13)0.0244 (3)
H2A1.10150.81700.61590.029*
C30.8788 (2)0.69789 (18)0.49836 (13)0.0276 (3)
H3A0.89650.77080.45770.033*
C40.7317 (2)0.56346 (18)0.46398 (13)0.0262 (3)
H4A0.64850.54430.39990.031*
C50.70658 (17)0.45701 (16)0.52345 (12)0.0207 (3)
H5A0.60580.36500.49890.025*
C60.82539 (16)0.48181 (15)0.61804 (11)0.0167 (2)
C70.80201 (17)0.36547 (15)0.68278 (11)0.0188 (3)
H7A0.90430.34100.68820.023*
H7B0.78900.41570.76390.023*
C80.32185 (16)0.31673 (15)0.79467 (11)0.0170 (3)
C90.35893 (18)0.46128 (16)0.88220 (12)0.0206 (3)
H9A0.46080.54810.89200.025*
C100.24451 (19)0.47717 (17)0.95549 (12)0.0232 (3)
H10A0.26860.57551.01630.028*
C110.09537 (19)0.35066 (17)0.94059 (13)0.0235 (3)
H11A0.01810.36190.99150.028*
C120.05959 (18)0.20772 (17)0.85097 (13)0.0241 (3)
H12A−0.04300.12130.84020.029*
C130.17259 (18)0.18976 (16)0.77676 (12)0.0215 (3)
H13A0.14780.09210.71490.026*
C140.60296 (16)0.03684 (15)0.82152 (12)0.0177 (3)
C150.60994 (18)−0.08832 (16)0.73025 (13)0.0233 (3)
H15A0.5699−0.10470.65080.028*
C160.67701 (19)−0.18925 (17)0.75786 (14)0.0277 (3)
H16A0.6826−0.27560.69650.033*
C170.7356 (2)−0.16551 (18)0.87353 (15)0.0287 (3)
H17A0.7817−0.23480.89130.034*
C180.7269 (2)−0.03992 (19)0.96360 (14)0.0278 (3)
H18A0.7667−0.02351.04310.033*
C190.65988 (18)0.06176 (16)0.93767 (12)0.0214 (3)
H19A0.65330.14750.99910.026*
H1N0.661 (2)0.160 (2)0.5644 (18)0.031 (5)*
U11U22U33U12U13U23
Cl10.02121 (18)0.0312 (2)0.02217 (17)0.00205 (14)−0.00251 (13)0.00503 (14)
P10.01745 (17)0.01436 (16)0.01548 (16)0.00594 (13)0.00454 (12)0.00518 (12)
O10.0195 (5)0.0182 (5)0.0192 (4)0.0047 (4)0.0049 (4)0.0043 (4)
O20.0209 (5)0.0169 (4)0.0210 (4)0.0091 (4)0.0081 (4)0.0086 (4)
O30.0242 (5)0.0170 (4)0.0164 (4)0.0107 (4)0.0044 (4)0.0056 (3)
N10.0207 (6)0.0157 (5)0.0184 (5)0.0048 (4)0.0074 (5)0.0029 (4)
C10.0186 (6)0.0199 (6)0.0170 (6)0.0080 (5)0.0041 (5)0.0036 (5)
C20.0262 (7)0.0184 (6)0.0290 (7)0.0072 (6)0.0116 (6)0.0088 (5)
C30.0369 (8)0.0268 (7)0.0302 (7)0.0179 (7)0.0142 (7)0.0170 (6)
C40.0302 (8)0.0322 (8)0.0235 (7)0.0178 (6)0.0053 (6)0.0128 (6)
C50.0198 (6)0.0218 (6)0.0201 (6)0.0088 (5)0.0032 (5)0.0059 (5)
C60.0181 (6)0.0166 (6)0.0166 (6)0.0086 (5)0.0054 (5)0.0049 (5)
C70.0178 (6)0.0189 (6)0.0188 (6)0.0054 (5)0.0025 (5)0.0072 (5)
C80.0190 (6)0.0198 (6)0.0173 (6)0.0109 (5)0.0048 (5)0.0091 (5)
C90.0211 (7)0.0179 (6)0.0223 (6)0.0072 (5)0.0035 (5)0.0068 (5)
C100.0289 (7)0.0217 (7)0.0209 (6)0.0132 (6)0.0057 (6)0.0056 (5)
C110.0259 (7)0.0295 (7)0.0249 (7)0.0171 (6)0.0107 (6)0.0140 (6)
C120.0199 (7)0.0238 (7)0.0315 (7)0.0085 (5)0.0084 (6)0.0125 (6)
C130.0217 (7)0.0185 (6)0.0238 (7)0.0085 (5)0.0050 (5)0.0056 (5)
C140.0161 (6)0.0162 (6)0.0225 (6)0.0057 (5)0.0050 (5)0.0092 (5)
C150.0257 (7)0.0201 (6)0.0231 (7)0.0103 (6)0.0016 (5)0.0049 (5)
C160.0281 (8)0.0198 (7)0.0352 (8)0.0120 (6)0.0052 (6)0.0066 (6)
C170.0272 (8)0.0265 (7)0.0410 (9)0.0138 (6)0.0075 (7)0.0193 (7)
C180.0297 (8)0.0339 (8)0.0279 (7)0.0142 (6)0.0068 (6)0.0190 (6)
C190.0230 (7)0.0229 (7)0.0214 (6)0.0094 (5)0.0080 (5)0.0102 (5)
Cl1—C11.7429 (14)C8—C91.3834 (18)
P1—O11.4699 (10)C8—C131.3831 (19)
P1—O21.5872 (9)C9—C101.389 (2)
P1—O31.5984 (9)C9—H9A0.9500
P1—N11.6042 (12)C10—C111.387 (2)
O2—C81.4043 (15)C10—H10A0.9500
O3—C141.4002 (15)C11—C121.386 (2)
N1—C71.4591 (17)C11—H11A0.9500
N1—H1N0.80 (2)C12—C131.390 (2)
C1—C21.3850 (19)C12—H12A0.9500
C1—C61.3942 (18)C13—H13A0.9500
C2—C31.389 (2)C14—C191.3829 (19)
C2—H2A0.9500C14—C151.3884 (19)
C3—C41.388 (2)C15—C161.392 (2)
C3—H3A0.9500C15—H15A0.9500
C4—C51.388 (2)C16—C171.384 (2)
C4—H4A0.9500C16—H16A0.9500
C5—C61.3910 (18)C17—C181.389 (2)
C5—H5A0.9500C17—H17A0.9500
C6—C71.5175 (17)C18—C191.389 (2)
C7—H7A0.9900C18—H18A0.9500
C7—H7B0.9900C19—H19A0.9500
O1—P1—O2116.37 (6)C9—C8—O2116.66 (12)
O1—P1—O3113.92 (5)C13—C8—O2121.59 (12)
O2—P1—O398.03 (5)C8—C9—C10118.77 (13)
O1—P1—N1113.05 (6)C8—C9—H9A120.6
O2—P1—N1104.00 (6)C10—C9—H9A120.6
O3—P1—N1110.13 (6)C11—C10—C9120.55 (13)
C8—O2—P1123.42 (8)C11—C10—H10A119.7
C14—O3—P1124.66 (8)C9—C10—H10A119.7
C7—N1—P1125.99 (9)C12—C11—C10119.65 (13)
C7—N1—H1N117.4 (14)C12—C11—H11A120.2
P1—N1—H1N116.5 (14)C10—C11—H11A120.2
C2—C1—C6122.43 (13)C11—C12—C13120.56 (14)
C2—C1—Cl1118.35 (11)C11—C12—H12A119.7
C6—C1—Cl1119.22 (10)C13—C12—H12A119.7
C1—C2—C3119.07 (13)C8—C13—C12118.73 (13)
C1—C2—H2A120.5C8—C13—H13A120.6
C3—C2—H2A120.5C12—C13—H13A120.6
C4—C3—C2119.95 (13)C19—C14—C15121.49 (12)
C4—C3—H3A120.0C19—C14—O3115.36 (11)
C2—C3—H3A120.0C15—C14—O3123.15 (12)
C3—C4—C5119.83 (14)C14—C15—C16118.46 (13)
C3—C4—H4A120.1C14—C15—H15A120.8
C5—C4—H4A120.1C16—C15—H15A120.8
C4—C5—C6121.60 (13)C17—C16—C15120.86 (14)
C4—C5—H5A119.2C17—C16—H16A119.6
C6—C5—H5A119.2C15—C16—H16A119.6
C5—C6—C1117.10 (12)C16—C17—C18119.76 (13)
C5—C6—C7122.47 (12)C16—C17—H17A120.1
C1—C6—C7120.42 (12)C18—C17—H17A120.1
N1—C7—C6113.03 (11)C19—C18—C17120.15 (14)
N1—C7—H7A109.0C19—C18—H18A119.9
C6—C7—H7A109.0C17—C18—H18A119.9
N1—C7—H7B109.0C14—C19—C18119.28 (13)
C6—C7—H7B109.0C14—C19—H19A120.4
H7A—C7—H7B107.8C18—C19—H19A120.4
C9—C8—C13121.71 (13)
O1—P1—O2—C867.62 (11)C1—C6—C7—N1−171.04 (11)
O3—P1—O2—C8−54.18 (10)P1—O2—C8—C9140.36 (10)
N1—P1—O2—C8−167.34 (10)P1—O2—C8—C13−41.74 (16)
O1—P1—O3—C1459.85 (11)C13—C8—C9—C101.6 (2)
O2—P1—O3—C14−176.56 (10)O2—C8—C9—C10179.53 (11)
N1—P1—O3—C14−68.38 (11)C8—C9—C10—C11−0.4 (2)
O1—P1—N1—C7174.57 (10)C9—C10—C11—C12−0.7 (2)
O2—P1—N1—C747.45 (12)C10—C11—C12—C130.6 (2)
O3—P1—N1—C7−56.72 (12)C9—C8—C13—C12−1.7 (2)
C6—C1—C2—C31.3 (2)O2—C8—C13—C12−179.47 (12)
Cl1—C1—C2—C3−178.73 (11)C11—C12—C13—C80.5 (2)
C1—C2—C3—C4−0.6 (2)P1—O3—C14—C19171.04 (10)
C2—C3—C4—C5−0.2 (2)P1—O3—C14—C15−8.87 (18)
C3—C4—C5—C60.4 (2)C19—C14—C15—C16−0.4 (2)
C4—C5—C6—C10.29 (19)O3—C14—C15—C16179.53 (13)
C4—C5—C6—C7−178.79 (12)C14—C15—C16—C17−0.1 (2)
C2—C1—C6—C5−1.16 (19)C15—C16—C17—C180.4 (2)
Cl1—C1—C6—C5178.91 (10)C16—C17—C18—C19−0.2 (2)
C2—C1—C6—C7177.94 (12)C15—C14—C19—C180.5 (2)
Cl1—C1—C6—C7−1.99 (17)O3—C14—C19—C18−179.36 (12)
P1—N1—C7—C6−113.96 (12)C17—C18—C19—C14−0.3 (2)
C5—C6—C7—N18.01 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O1i0.80 (2)2.08 (2)2.8703 (15)172.2 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯O1i0.80 (2)2.08 (2)2.8703 (15)172.2 (19)

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diphenyl (benzyl-amido)phosphate.

Authors:  Mehrdad Pourayoubi; Hossein Eshtiagh-Hosseini; Poorya Zargaran; Vladimir Divjakovic
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-12-19

3.  Tetra-phenyl piperazine-1,4-diyldiphos-pho-nate.

Authors:  Mehrdad Pourayoubi; Poorya Zargaran
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-24
  3 in total
  1 in total

1.  Diphenyl (cyclo-pentyl-amido)-phospho-nate.

Authors:  Fahimeh Sabbaghi; Mehrdad Pourayoubi; Poorya Zargaran; Giuseppe Bruno; Hadi Amiri Rudbari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-11
  1 in total

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