Literature DB >> 21589556

Tetra-phenyl piperazine-1,4-diyldiphos-pho-nate.

Mehrdad Pourayoubi1, Poorya Zargaran.   

Abstract

The mol-ecule of the title compound, C(28)H(28)N(2)O(6)P(2), is organized around an inversion center located at the centre of the piperazine ring. Both piperazine N atoms are substituted by P(O)(OC(6)H(5))(2) phospho-ester groups. The P atoms display a slightly distorted tetra-hedral environment; the N atoms show some deviation from planarity. The O atoms of the P=O groups are involved in inter-molecular C-H⋯O hydrogen bonds, building R(2) (2)(22) rings, in extended chains parallel to the a axis. C-H⋯π inter-actions involving the phenyl rings further stabilize the packing.

Entities:  

Year:  2010        PMID: 21589556      PMCID: PMC3011784          DOI: 10.1107/S1600536810047860

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the physical properties of bis­phospho­ramidates, see: Nguyen & Kim (2008 ▶). For related structures, see: Chen et al. (2007 ▶); Balakrishna et al. (2003 ▶, 2006 ▶); Rodriguez i Zubiri et al. (2002 ▶). For hydrogen-bond motifs, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C28H28N2O6P2 M = 550.46 Monoclinic, a = 6.3117 (4) Å b = 8.9530 (5) Å c = 22.8630 (13) Å β = 96.756 (1)° V = 1282.99 (13) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 100 K 0.55 × 0.40 × 0.20 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.890, T max = 0.958 14864 measured reflections 3405 independent reflections 3071 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.089 S = 1.03 3405 reflections 172 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.27 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶), ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810047860/dn2623sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810047860/dn2623Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C28H28N2O6P2F(000) = 576
Mr = 550.46Dx = 1.425 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2258 reflections
a = 6.3117 (4) Åθ = 3–29°
b = 8.9530 (5) ŵ = 0.22 mm1
c = 22.8630 (13) ÅT = 100 K
β = 96.756 (1)°Plate, colourless
V = 1282.99 (13) Å30.55 × 0.40 × 0.20 mm
Z = 2
Bruker APEXII CCD area-detector diffractometer3405 independent reflections
Radiation source: fine-focus sealed tube3071 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 29.0°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −8→8
Tmin = 0.890, Tmax = 0.958k = −12→12
14864 measured reflectionsl = −30→31
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.089H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0496P)2 + 0.567P] where P = (Fo2 + 2Fc2)/3
3405 reflections(Δ/σ)max = 0.002
172 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.29408 (4)0.70141 (3)0.584588 (12)0.01226 (9)
O10.08499 (13)0.65211 (10)0.59873 (4)0.01722 (18)
O20.30060 (14)0.86102 (9)0.55434 (4)0.01595 (17)
O30.46851 (13)0.72855 (9)0.63989 (3)0.01431 (17)
N10.40456 (15)0.59125 (11)0.54033 (4)0.01435 (19)
C10.27230 (18)0.49056 (13)0.50046 (5)0.0154 (2)
H1A0.21680.54520.46420.019*
H1B0.14900.45570.51980.019*
C20.59794 (18)0.64262 (13)0.51554 (5)0.0159 (2)
H2A0.68520.70540.54480.019*
H2B0.55640.70390.48000.019*
C30.24646 (19)0.99346 (12)0.58193 (5)0.0141 (2)
C40.03688 (19)1.04226 (13)0.57405 (5)0.0174 (2)
H4A−0.07170.98310.55310.021*
C5−0.0111 (2)1.18012 (14)0.59758 (6)0.0213 (2)
H5A−0.15381.21570.59250.026*
C60.1478 (2)1.26566 (14)0.62831 (6)0.0224 (3)
H6A0.11421.36030.64360.027*
C70.3561 (2)1.21302 (14)0.63680 (6)0.0221 (3)
H7A0.46421.27090.65860.026*
C80.40715 (19)1.07579 (14)0.61346 (5)0.0181 (2)
H8A0.54941.03930.61910.022*
C90.51165 (18)0.61794 (12)0.68335 (5)0.0136 (2)
C100.36396 (19)0.58904 (13)0.72215 (5)0.0160 (2)
H10A0.22950.63800.71810.019*
C110.4174 (2)0.48638 (14)0.76736 (5)0.0190 (2)
H11A0.31760.46380.79410.023*
C120.6154 (2)0.41695 (14)0.77356 (5)0.0203 (2)
H12A0.65180.34860.80490.024*
C130.7607 (2)0.44750 (14)0.73384 (6)0.0204 (2)
H13A0.89570.39930.73800.025*
C140.70950 (18)0.54823 (13)0.68798 (5)0.0168 (2)
H14A0.80750.56880.66050.020*
U11U22U33U12U13U23
P10.01325 (14)0.01125 (14)0.01239 (14)0.00080 (10)0.00199 (10)−0.00088 (9)
O10.0147 (4)0.0193 (4)0.0182 (4)0.0001 (3)0.0038 (3)−0.0014 (3)
O20.0226 (4)0.0125 (4)0.0133 (4)0.0031 (3)0.0041 (3)−0.0003 (3)
O30.0169 (4)0.0121 (4)0.0136 (4)−0.0012 (3)−0.0001 (3)0.0006 (3)
N10.0137 (4)0.0127 (4)0.0170 (5)−0.0015 (3)0.0031 (3)−0.0035 (3)
C10.0135 (5)0.0158 (5)0.0170 (5)−0.0008 (4)0.0017 (4)−0.0036 (4)
C20.0165 (5)0.0133 (5)0.0187 (5)−0.0013 (4)0.0054 (4)−0.0029 (4)
C30.0207 (5)0.0103 (5)0.0116 (5)0.0014 (4)0.0039 (4)0.0008 (4)
C40.0195 (5)0.0157 (5)0.0166 (5)0.0005 (4)0.0005 (4)0.0003 (4)
C50.0238 (6)0.0170 (6)0.0240 (6)0.0060 (5)0.0065 (5)0.0036 (5)
C60.0344 (7)0.0118 (5)0.0229 (6)0.0006 (5)0.0112 (5)−0.0009 (4)
C70.0290 (6)0.0170 (6)0.0206 (6)−0.0073 (5)0.0049 (5)−0.0026 (4)
C80.0191 (5)0.0177 (6)0.0179 (5)−0.0020 (4)0.0033 (4)0.0012 (4)
C90.0165 (5)0.0107 (5)0.0130 (5)−0.0004 (4)−0.0004 (4)−0.0008 (4)
C100.0174 (5)0.0157 (5)0.0150 (5)0.0024 (4)0.0027 (4)−0.0012 (4)
C110.0249 (6)0.0178 (5)0.0148 (5)0.0005 (5)0.0045 (4)0.0005 (4)
C120.0268 (6)0.0166 (6)0.0167 (5)0.0024 (5)−0.0011 (5)0.0019 (4)
C130.0181 (5)0.0180 (6)0.0245 (6)0.0037 (4)−0.0006 (5)−0.0001 (5)
C140.0154 (5)0.0157 (5)0.0195 (5)0.0000 (4)0.0021 (4)−0.0016 (4)
P1—O11.4633 (9)C5—C61.3855 (19)
P1—O21.5901 (9)C5—H5A0.9500
P1—O31.5944 (8)C6—C71.3885 (19)
P1—N11.6275 (10)C6—H6A0.9500
O2—C31.4040 (13)C7—C81.3923 (17)
O3—C91.4066 (13)C7—H7A0.9500
N1—C11.4702 (14)C8—H8A0.9500
N1—C21.4783 (14)C9—C101.3847 (16)
C1—C2i1.5155 (16)C9—C141.3889 (16)
C1—H1A0.9900C10—C111.3946 (16)
C1—H1B0.9900C10—H10A0.9500
C2—C1i1.5155 (16)C11—C121.3880 (18)
C2—H2A0.9900C11—H11A0.9500
C2—H2B0.9900C12—C131.3913 (18)
C3—C41.3846 (16)C12—H12A0.9500
C3—C81.3855 (17)C13—C141.3919 (17)
C4—C51.3937 (17)C13—H13A0.9500
C4—H4A0.9500C14—H14A0.9500
O1—P1—O2115.93 (5)C6—C5—H5A119.7
O1—P1—O3115.30 (5)C4—C5—H5A119.7
O2—P1—O399.04 (4)C5—C6—C7120.00 (11)
O1—P1—N1114.71 (5)C5—C6—H6A120.0
O2—P1—N1103.85 (5)C7—C6—H6A120.0
O3—P1—N1106.20 (5)C6—C7—C8120.27 (12)
C3—O2—P1122.92 (7)C6—C7—H7A119.9
C9—O3—P1120.74 (7)C8—C7—H7A119.9
C1—N1—C2112.78 (9)C3—C8—C7118.71 (11)
C1—N1—P1120.23 (8)C3—C8—H8A120.6
C2—N1—P1118.91 (7)C7—C8—H8A120.6
N1—C1—C2i110.39 (9)C10—C9—C14122.29 (11)
N1—C1—H1A109.6C10—C9—O3119.68 (10)
C2i—C1—H1A109.6C14—C9—O3117.89 (10)
N1—C1—H1B109.6C9—C10—C11118.39 (11)
C2i—C1—H1B109.6C9—C10—H10A120.8
H1A—C1—H1B108.1C11—C10—H10A120.8
N1—C2—C1i109.99 (9)C12—C11—C10120.49 (11)
N1—C2—H2A109.7C12—C11—H11A119.8
C1i—C2—H2A109.7C10—C11—H11A119.8
N1—C2—H2B109.7C11—C12—C13119.99 (11)
C1i—C2—H2B109.7C11—C12—H12A120.0
H2A—C2—H2B108.2C13—C12—H12A120.0
C4—C3—C8121.97 (11)C12—C13—C14120.44 (11)
C4—C3—O2119.17 (10)C12—C13—H13A119.8
C8—C3—O2118.76 (10)C14—C13—H13A119.8
C3—C4—C5118.47 (11)C9—C14—C13118.39 (11)
C3—C4—H4A120.8C9—C14—H14A120.8
C5—C4—H4A120.8C13—C14—H14A120.8
C6—C5—C4120.55 (12)
Cg1 and Cg2 are the centroids of the C3–C8 and C11–C14 rings, respectively.
D—H···AD—HH···AD···AD—H···A
C14—H14A···O1ii0.952.493.4327 (15)172
C11—H11A···Cg1iii0.952.743.3324 (12)121
C7—H7A···Cg2iv0.952.593.4099 (13)145
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C3–C8 and C11–C14 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14A⋯O1i0.952.493.4327 (15)172
C11—H11ACg1ii0.952.743.3324 (12)121
C7—H7ACg2iii0.952.593.4099 (13)145

Symmetry codes: (i) ; (ii) ; (iii) .

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2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

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Authors:  Anthony L Spek
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