| Literature DB >> 21754768 |
Fahimeh Sabbaghi, Mehrdad Pourayoubi, Poorya Zargaran, Giuseppe Bruno, Hadi Amiri Rudbari.
Abstract
In the title mol-ecule, C(17)H(20)NO(3)P, the P atom is bonded in a distorted tetra-hedral environment. The dihedral angle between the two phenyl rings is 23.52 (10)°. The phosphoryl and N-H groups are anti with respect to one another. The -CH(2)-CH(2)-CH(2)-CH(2)- sequence of atoms in the cyclo-pentyl ring is disordered over two sets of sites with refined occupancies of 0.574 (10) and 0.426 (10). In the crystal, mol-ecules are linked via N-H⋯O=P hydrogen bonds to form extended chains along [010].Entities:
Year: 2011 PMID: 21754768 PMCID: PMC3120324 DOI: 10.1107/S1600536811017028
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C17H20NO3P | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 9100 reflections |
| θ = 2.3–32.9° | |
| µ = 0.18 mm−1 | |
| β = 109.731 (1)° | Irregular, colorless |
| 0.5 × 0.4 × 0.2 mm | |
| Bruker APEXII CCD diffractometer | 3531 independent reflections |
| Radiation source: fine-focus sealed tube | 3180 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 139394 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3531 reflections | (Δ/σ)max = 0.04 |
| 240 parameters | Δρmax = 0.23 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.11088 (11) | 0.7234 (4) | 0.15643 (15) | 0.0736 (6) | |
| H1A | 0.1163 | 0.5834 | 0.1931 | 0.088* | 0.574 (10) |
| C2 | 0.0736 (5) | 0.9286 (12) | 0.1911 (5) | 0.108 (3) | 0.574 (10) |
| H2A | 0.0896 | 0.9112 | 0.2482 | 0.130* | 0.574 (10) |
| H2B | 0.0900 | 1.0919 | 0.1790 | 0.130* | 0.574 (10) |
| C3 | 0.0542 (3) | 0.6434 (17) | 0.0887 (4) | 0.105 (3) | 0.574 (10) |
| H3A | 0.0622 | 0.4685 | 0.0793 | 0.125* | 0.574 (10) |
| H3B | 0.0562 | 0.7400 | 0.0437 | 0.125* | 0.574 (10) |
| C4 | −0.0107 (7) | 0.901 (2) | 0.1558 (11) | 0.114 (5) | 0.574 (10) |
| H4A | −0.0339 | 1.0511 | 0.1267 | 0.136* | 0.574 (10) |
| H4B | −0.0344 | 0.8714 | 0.1962 | 0.136* | 0.574 (10) |
| C5 | −0.0237 (3) | 0.6791 (19) | 0.1003 (5) | 0.111 (2) | 0.574 (10) |
| H5A | −0.0381 | 0.5316 | 0.1238 | 0.133* | 0.574 (10) |
| H5B | −0.0650 | 0.7139 | 0.0503 | 0.133* | 0.574 (10) |
| H1AA | 0.1016 | 0.5426 | 0.1550 | 0.088* | 0.426 (10) |
| C2A | 0.0824 (7) | 0.830 (4) | 0.2078 (6) | 0.164 (7) | 0.426 (10) |
| H2A1 | 0.1020 | 1.0001 | 0.2192 | 0.197* | 0.426 (10) |
| H2A2 | 0.0978 | 0.7367 | 0.2570 | 0.197* | 0.426 (10) |
| C3A | 0.0515 (4) | 0.856 (3) | 0.0735 (5) | 0.121 (4) | 0.426 (10) |
| H3A1 | 0.0694 | 1.0221 | 0.0664 | 0.146* | 0.426 (10) |
| H3A2 | 0.0477 | 0.7548 | 0.0274 | 0.146* | 0.426 (10) |
| C4A | −0.0101 (9) | 0.830 (4) | 0.1673 (13) | 0.151 (8) | 0.426 (10) |
| H4A1 | −0.0320 | 0.6723 | 0.1766 | 0.181* | 0.426 (10) |
| H4A2 | −0.0335 | 0.9642 | 0.1882 | 0.181* | 0.426 (10) |
| C5A | −0.0243 (6) | 0.864 (3) | 0.0878 (8) | 0.131 (4) | 0.426 (10) |
| H5A1 | −0.0497 | 1.0243 | 0.0711 | 0.157* | 0.426 (10) |
| H5A2 | −0.0590 | 0.7336 | 0.0577 | 0.157* | 0.426 (10) |
| C6 | 0.38086 (8) | 0.6852 (3) | 0.24407 (8) | 0.0428 (3) | |
| C7 | 0.37482 (10) | 0.8825 (3) | 0.29063 (10) | 0.0530 (4) | |
| H7 | 0.3370 | 1.0062 | 0.2706 | 0.064* | |
| C8 | 0.42607 (11) | 0.8939 (4) | 0.36780 (11) | 0.0642 (4) | |
| H8 | 0.4225 | 1.0252 | 0.4004 | 0.077* | |
| C9 | 0.48253 (11) | 0.7112 (4) | 0.39663 (11) | 0.0657 (5) | |
| H9 | 0.5167 | 0.7189 | 0.4487 | 0.079* | |
| C10 | 0.48839 (10) | 0.5181 (4) | 0.34858 (12) | 0.0637 (4) | |
| H10 | 0.5271 | 0.3968 | 0.3680 | 0.076* | |
| C11 | 0.43704 (9) | 0.5027 (3) | 0.27138 (10) | 0.0534 (4) | |
| H11 | 0.4405 | 0.3714 | 0.2387 | 0.064* | |
| C12 | 0.29427 (10) | 0.1941 (3) | 0.02869 (10) | 0.0553 (4) | |
| H12 | 0.3133 | 0.1604 | 0.0827 | 0.066* | |
| C13 | 0.31354 (11) | 0.0410 (4) | −0.02407 (12) | 0.0640 (5) | |
| H13 | 0.3458 | −0.0972 | −0.0052 | 0.077* | |
| C14 | 0.28593 (12) | 0.0892 (4) | −0.10368 (12) | 0.0708 (5) | |
| H14 | 0.2993 | −0.0153 | −0.1386 | 0.085* | |
| C15 | 0.23842 (12) | 0.2924 (4) | −0.13150 (10) | 0.0706 (5) | |
| H15 | 0.2194 | 0.3250 | −0.1856 | 0.085* | |
| C16 | 0.21843 (10) | 0.4497 (4) | −0.08008 (9) | 0.0569 (4) | |
| H16 | 0.1866 | 0.5886 | −0.0991 | 0.068* | |
| C17 | 0.24637 (9) | 0.3976 (3) | −0.00026 (8) | 0.0452 (3) | |
| N | 0.19186 (8) | 0.7736 (3) | 0.16096 (8) | 0.0493 (3) | |
| O1 | 0.23902 (7) | 0.31497 (19) | 0.17324 (6) | 0.0509 (3) | |
| O2 | 0.33107 (6) | 0.6759 (2) | 0.16438 (6) | 0.0469 (3) | |
| O3 | 0.22198 (7) | 0.5640 (2) | 0.04688 (6) | 0.0529 (3) | |
| P | 0.24508 (2) | 0.56130 (6) | 0.14026 (2) | 0.04116 (13) | |
| H | 0.2031 (11) | 0.915 (4) | 0.1566 (11) | 0.057 (5)* |
| C1 | 0.0531 (10) | 0.0536 (10) | 0.1190 (17) | −0.0082 (8) | 0.0356 (11) | −0.0161 (11) |
| C2 | 0.072 (4) | 0.092 (4) | 0.175 (8) | −0.012 (2) | 0.060 (5) | −0.073 (4) |
| C3 | 0.058 (2) | 0.141 (5) | 0.107 (4) | −0.013 (3) | 0.019 (2) | −0.056 (4) |
| C4 | 0.072 (5) | 0.107 (5) | 0.170 (12) | 0.018 (4) | 0.052 (6) | −0.029 (5) |
| C5 | 0.050 (2) | 0.147 (6) | 0.129 (5) | −0.012 (3) | 0.022 (3) | −0.027 (5) |
| C1A | 0.0531 (10) | 0.0536 (10) | 0.1190 (17) | −0.0082 (8) | 0.0356 (11) | −0.0161 (11) |
| C2A | 0.061 (4) | 0.38 (2) | 0.062 (3) | −0.018 (9) | 0.034 (3) | −0.024 (8) |
| C3A | 0.061 (3) | 0.210 (12) | 0.087 (4) | 0.012 (5) | 0.018 (3) | 0.046 (6) |
| C4A | 0.060 (7) | 0.28 (2) | 0.128 (10) | −0.052 (9) | 0.058 (7) | −0.058 (13) |
| C5A | 0.075 (5) | 0.165 (11) | 0.148 (8) | 0.014 (6) | 0.032 (5) | 0.035 (9) |
| C6 | 0.0413 (7) | 0.0400 (7) | 0.0492 (7) | −0.0041 (6) | 0.0180 (6) | 0.0033 (6) |
| C7 | 0.0535 (8) | 0.0436 (8) | 0.0596 (9) | 0.0028 (7) | 0.0161 (7) | −0.0015 (7) |
| C8 | 0.0679 (11) | 0.0583 (10) | 0.0613 (10) | −0.0034 (8) | 0.0153 (8) | −0.0124 (8) |
| C9 | 0.0566 (10) | 0.0737 (12) | 0.0567 (9) | −0.0057 (9) | 0.0059 (8) | 0.0023 (9) |
| C10 | 0.0478 (8) | 0.0617 (10) | 0.0736 (11) | 0.0073 (8) | 0.0101 (8) | 0.0083 (9) |
| C11 | 0.0486 (8) | 0.0469 (8) | 0.0650 (10) | 0.0025 (7) | 0.0198 (7) | −0.0024 (7) |
| C12 | 0.0640 (9) | 0.0521 (9) | 0.0489 (8) | 0.0033 (7) | 0.0180 (7) | −0.0015 (7) |
| C13 | 0.0666 (11) | 0.0576 (10) | 0.0727 (11) | 0.0035 (8) | 0.0300 (9) | −0.0089 (8) |
| C14 | 0.0743 (12) | 0.0815 (14) | 0.0667 (11) | −0.0092 (10) | 0.0370 (10) | −0.0217 (10) |
| C15 | 0.0744 (12) | 0.0967 (15) | 0.0435 (8) | −0.0090 (11) | 0.0238 (8) | −0.0067 (9) |
| C16 | 0.0545 (9) | 0.0676 (11) | 0.0463 (8) | −0.0004 (8) | 0.0138 (7) | 0.0055 (7) |
| C17 | 0.0462 (7) | 0.0477 (8) | 0.0410 (7) | −0.0069 (6) | 0.0138 (6) | −0.0034 (6) |
| N | 0.0497 (7) | 0.0374 (7) | 0.0636 (8) | −0.0043 (5) | 0.0227 (6) | −0.0056 (6) |
| O1 | 0.0638 (6) | 0.0359 (5) | 0.0532 (6) | −0.0033 (5) | 0.0199 (5) | 0.0019 (4) |
| O2 | 0.0486 (6) | 0.0486 (6) | 0.0459 (5) | −0.0031 (4) | 0.0190 (4) | 0.0027 (4) |
| O3 | 0.0659 (7) | 0.0478 (6) | 0.0416 (5) | 0.0109 (5) | 0.0136 (5) | 0.0021 (4) |
| P | 0.0474 (2) | 0.0344 (2) | 0.0416 (2) | −0.00097 (14) | 0.01477 (15) | 0.00036 (13) |
| C1—C3 | 1.365 (5) | C6—O2 | 1.4088 (17) |
| C1—N | 1.458 (2) | C7—C8 | 1.382 (2) |
| C1—C2 | 1.524 (6) | C7—H7 | 0.9300 |
| C1—H1A | 0.9800 | C8—C9 | 1.378 (3) |
| C2—C4 | 1.442 (16) | C8—H8 | 0.9300 |
| C2—H2A | 0.9700 | C9—C10 | 1.372 (3) |
| C2—H2B | 0.9700 | C9—H9 | 0.9300 |
| C3—C5 | 1.499 (7) | C10—C11 | 1.384 (2) |
| C3—H3A | 0.9700 | C10—H10 | 0.9300 |
| C3—H3B | 0.9700 | C11—H11 | 0.9300 |
| C4—C5 | 1.516 (16) | C12—C17 | 1.377 (2) |
| C4—H4A | 0.9700 | C12—C13 | 1.381 (2) |
| C4—H4B | 0.9700 | C12—H12 | 0.9300 |
| C5—H5A | 0.9700 | C13—C14 | 1.369 (3) |
| C5—H5B | 0.9700 | C13—H13 | 0.9300 |
| C2A—C4A | 1.577 (19) | C14—C15 | 1.369 (3) |
| C2A—H2A1 | 0.9700 | C14—H14 | 0.9300 |
| C2A—H2A2 | 0.9700 | C15—C16 | 1.383 (3) |
| C3A—C5A | 1.472 (12) | C15—H15 | 0.9300 |
| C3A—H3A1 | 0.9700 | C16—C17 | 1.376 (2) |
| C3A—H3A2 | 0.9700 | C16—H16 | 0.9300 |
| C4A—C5A | 1.37 (3) | C17—O3 | 1.3968 (18) |
| C4A—H4A1 | 0.9700 | N—P | 1.6078 (14) |
| C4A—H4A2 | 0.9700 | N—H | 0.793 (19) |
| C5A—H5A1 | 0.9700 | O1—P | 1.4630 (11) |
| C5A—H5A2 | 0.9700 | O2—P | 1.5839 (10) |
| C6—C11 | 1.372 (2) | O3—P | 1.5838 (11) |
| C6—C7 | 1.373 (2) | ||
| C3—C1—N | 122.8 (3) | C11—C6—C7 | 122.00 (15) |
| C3—C1—C2 | 106.8 (4) | C11—C6—O2 | 118.51 (13) |
| N—C1—C2 | 114.5 (3) | C7—C6—O2 | 119.39 (13) |
| C3—C1—H1A | 103.5 | C6—C7—C8 | 118.69 (15) |
| N—C1—H1A | 103.5 | C6—C7—H7 | 120.7 |
| C2—C1—H1A | 103.5 | C8—C7—H7 | 120.7 |
| C4—C2—C1 | 106.9 (6) | C9—C8—C7 | 120.23 (17) |
| C4—C2—H2A | 110.3 | C9—C8—H8 | 119.9 |
| C1—C2—H2A | 110.4 | C7—C8—H8 | 119.9 |
| C4—C2—H2B | 110.3 | C10—C9—C8 | 120.07 (17) |
| C1—C2—H2B | 110.3 | C10—C9—H9 | 120.0 |
| H2A—C2—H2B | 108.6 | C8—C9—H9 | 120.0 |
| C1—C3—C5 | 106.9 (4) | C9—C10—C11 | 120.43 (17) |
| C1—C3—H3A | 110.3 | C9—C10—H10 | 119.8 |
| C5—C3—H3A | 110.3 | C11—C10—H10 | 119.8 |
| C1—C3—H3B | 110.3 | C6—C11—C10 | 118.57 (16) |
| C5—C3—H3B | 110.3 | C6—C11—H11 | 120.7 |
| H3A—C3—H3B | 108.6 | C10—C11—H11 | 120.7 |
| C2—C4—C5 | 105.9 (6) | C17—C12—C13 | 118.71 (16) |
| C2—C4—H4A | 110.6 | C17—C12—H12 | 120.6 |
| C5—C4—H4A | 110.5 | C13—C12—H12 | 120.6 |
| C2—C4—H4B | 110.5 | C14—C13—C12 | 121.09 (18) |
| C5—C4—H4B | 110.6 | C14—C13—H13 | 119.5 |
| H4A—C4—H4B | 108.7 | C12—C13—H13 | 119.5 |
| C3—C5—C4 | 104.2 (6) | C13—C14—C15 | 119.48 (17) |
| C3—C5—H5A | 110.9 | C13—C14—H14 | 120.3 |
| C4—C5—H5A | 110.9 | C15—C14—H14 | 120.3 |
| C3—C5—H5B | 110.9 | C14—C15—C16 | 120.75 (17) |
| C4—C5—H5B | 110.9 | C14—C15—H15 | 119.6 |
| H5A—C5—H5B | 108.9 | C16—C15—H15 | 119.6 |
| C4A—C2A—H2A1 | 110.5 | C17—C16—C15 | 118.99 (18) |
| C4A—C2A—H2A2 | 110.6 | C17—C16—H16 | 120.5 |
| H2A1—C2A—H2A2 | 108.7 | C15—C16—H16 | 120.5 |
| C5A—C3A—H3A1 | 111.4 | C12—C17—C16 | 120.99 (15) |
| C5A—C3A—H3A2 | 111.3 | C12—C17—O3 | 124.08 (13) |
| H3A1—C3A—H3A2 | 109.2 | C16—C17—O3 | 114.93 (14) |
| C5A—C4A—C2A | 106.1 (12) | C1—N—P | 121.36 (12) |
| C5A—C4A—H4A1 | 110.5 | C1—N—H | 117.0 (14) |
| C2A—C4A—H4A1 | 110.5 | P—N—H | 117.3 (14) |
| C5A—C4A—H4A2 | 110.5 | C6—O2—P | 121.30 (8) |
| C2A—C4A—H4A2 | 110.5 | C17—O3—P | 127.62 (10) |
| H4A1—C4A—H4A2 | 108.7 | O1—P—O2 | 115.93 (6) |
| C4A—C5A—C3A | 108.6 (9) | O1—P—O3 | 114.03 (6) |
| C4A—C5A—H5A1 | 110.0 | O2—P—O3 | 99.72 (6) |
| C3A—C5A—H5A1 | 109.9 | O1—P—N | 114.24 (7) |
| C4A—C5A—H5A2 | 110.0 | O2—P—N | 105.55 (6) |
| C3A—C5A—H5A2 | 110.0 | O3—P—N | 105.88 (7) |
| H5A1—C5A—H5A2 | 108.4 | ||
| C3—C1—C2—C4 | 18.7 (10) | C13—C12—C17—C16 | −0.5 (2) |
| N—C1—C2—C4 | 158.1 (8) | C13—C12—C17—O3 | 179.15 (15) |
| N—C1—C3—C5 | −165.1 (4) | C15—C16—C17—C12 | 0.8 (3) |
| C2—C1—C3—C5 | −29.9 (7) | C15—C16—C17—O3 | −178.89 (15) |
| C1—C2—C4—C5 | 0.3 (13) | C3—C1—N—P | −57.8 (5) |
| C1—C3—C5—C4 | 29.8 (11) | C2—C1—N—P | 170.1 (4) |
| C2—C4—C5—C3 | −17.2 (14) | C11—C6—O2—P | 98.41 (14) |
| C2A—C4A—C5A—C3A | 7(2) | C7—C6—O2—P | −85.20 (15) |
| C11—C6—C7—C8 | −1.3 (2) | C12—C17—O3—P | 2.0 (2) |
| O2—C6—C7—C8 | −177.58 (15) | C16—C17—O3—P | −178.33 (11) |
| C6—C7—C8—C9 | 0.7 (3) | C6—O2—P—O1 | −49.72 (12) |
| C7—C8—C9—C10 | 0.4 (3) | C6—O2—P—O3 | −172.58 (10) |
| C8—C9—C10—C11 | −1.1 (3) | C6—O2—P—N | 77.80 (12) |
| C7—C6—C11—C10 | 0.7 (2) | C17—O3—P—O1 | −46.75 (15) |
| O2—C6—C11—C10 | 177.00 (14) | C17—O3—P—O2 | 77.45 (13) |
| C9—C10—C11—C6 | 0.5 (3) | C17—O3—P—N | −173.19 (12) |
| C17—C12—C13—C14 | 0.1 (3) | C1—N—P—O1 | −43.33 (18) |
| C12—C13—C14—C15 | 0.0 (3) | C1—N—P—O2 | −171.87 (15) |
| C13—C14—C15—C16 | 0.3 (3) | C1—N—P—O3 | 82.99 (16) |
| C14—C15—C16—C17 | −0.7 (3) |
| H··· | ||||
| N—H···O1i | 0.790 (19) | 2.23 (2) | 3.0039 (17) | 167.7 (19) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N—H⋯O1i | 0.790 (19) | 2.23 (2) | 3.0039 (17) | 167.7 (19) |
Symmetry code: (i) .