Literature DB >> 21754768

Diphenyl (cyclo-pentyl-amido)-phospho-nate.

Fahimeh Sabbaghi, Mehrdad Pourayoubi, Poorya Zargaran, Giuseppe Bruno, Hadi Amiri Rudbari.   

Abstract

In the title mol-ecule, C(17)H(20)NO(3)P, the P atom is bonded in a distorted tetra-hedral environment. The dihedral angle between the two phenyl rings is 23.52 (10)°. The phosphoryl and N-H groups are anti with respect to one another. The -CH(2)-CH(2)-CH(2)-CH(2)- sequence of atoms in the cyclo-pentyl ring is disordered over two sets of sites with refined occupancies of 0.574 (10) and 0.426 (10). In the crystal, mol-ecules are linked via N-H⋯O=P hydrogen bonds to form extended chains along [010].

Entities:  

Year:  2011        PMID: 21754768      PMCID: PMC3120324          DOI: 10.1107/S1600536811017028

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For a related structure, see: Pourayoubi et al. (2011 ▶).

Experimental

Crystal data

C17H20NO3P M = 317.31 Monoclinic, a = 18.0095 (4) Å b = 5.3471 (1) Å c = 17.9387 (4) Å β = 109.731 (1)° V = 1626.05 (6) Å3 Z = 4 Mo Kα radiation μ = 0.18 mm−1 T = 296 K 0.5 × 0.4 × 0.2 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2004 ▶) T min = 0.709, T max = 0.747 139394 measured reflections 3531 independent reflections 3180 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.110 S = 1.08 3531 reflections 240 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and enCIFer (Allen et al., 2004 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811017028/lh5228sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811017028/lh5228Isup2.hkl Supplementary material file. DOI: 10.1107/S1600536811017028/lh5228Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H20NO3PF(000) = 672
Mr = 317.31Dx = 1.296 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 9100 reflections
a = 18.0095 (4) Åθ = 2.3–32.9°
b = 5.3471 (1) ŵ = 0.18 mm1
c = 17.9387 (4) ÅT = 296 K
β = 109.731 (1)°Irregular, colorless
V = 1626.05 (6) Å30.5 × 0.4 × 0.2 mm
Z = 4
Bruker APEXII CCD diffractometer3531 independent reflections
Radiation source: fine-focus sealed tube3180 reflections with I > 2σ(I)
graphiteRint = 0.021
φ and ω scansθmax = 27.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2004)h = −23→23
Tmin = 0.709, Tmax = 0.747k = −6→6
139394 measured reflectionsl = −22→22
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.110H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0497P)2 + 0.5717P] where P = (Fo2 + 2Fc2)/3
3531 reflections(Δ/σ)max = 0.04
240 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.11088 (11)0.7234 (4)0.15643 (15)0.0736 (6)
H1A0.11630.58340.19310.088*0.574 (10)
C20.0736 (5)0.9286 (12)0.1911 (5)0.108 (3)0.574 (10)
H2A0.08960.91120.24820.130*0.574 (10)
H2B0.09001.09190.17900.130*0.574 (10)
C30.0542 (3)0.6434 (17)0.0887 (4)0.105 (3)0.574 (10)
H3A0.06220.46850.07930.125*0.574 (10)
H3B0.05620.74000.04370.125*0.574 (10)
C4−0.0107 (7)0.901 (2)0.1558 (11)0.114 (5)0.574 (10)
H4A−0.03391.05110.12670.136*0.574 (10)
H4B−0.03440.87140.19620.136*0.574 (10)
C5−0.0237 (3)0.6791 (19)0.1003 (5)0.111 (2)0.574 (10)
H5A−0.03810.53160.12380.133*0.574 (10)
H5B−0.06500.71390.05030.133*0.574 (10)
H1AA0.10160.54260.15500.088*0.426 (10)
C2A0.0824 (7)0.830 (4)0.2078 (6)0.164 (7)0.426 (10)
H2A10.10201.00010.21920.197*0.426 (10)
H2A20.09780.73670.25700.197*0.426 (10)
C3A0.0515 (4)0.856 (3)0.0735 (5)0.121 (4)0.426 (10)
H3A10.06941.02210.06640.146*0.426 (10)
H3A20.04770.75480.02740.146*0.426 (10)
C4A−0.0101 (9)0.830 (4)0.1673 (13)0.151 (8)0.426 (10)
H4A1−0.03200.67230.17660.181*0.426 (10)
H4A2−0.03350.96420.18820.181*0.426 (10)
C5A−0.0243 (6)0.864 (3)0.0878 (8)0.131 (4)0.426 (10)
H5A1−0.04971.02430.07110.157*0.426 (10)
H5A2−0.05900.73360.05770.157*0.426 (10)
C60.38086 (8)0.6852 (3)0.24407 (8)0.0428 (3)
C70.37482 (10)0.8825 (3)0.29063 (10)0.0530 (4)
H70.33701.00620.27060.064*
C80.42607 (11)0.8939 (4)0.36780 (11)0.0642 (4)
H80.42251.02520.40040.077*
C90.48253 (11)0.7112 (4)0.39663 (11)0.0657 (5)
H90.51670.71890.44870.079*
C100.48839 (10)0.5181 (4)0.34858 (12)0.0637 (4)
H100.52710.39680.36800.076*
C110.43704 (9)0.5027 (3)0.27138 (10)0.0534 (4)
H110.44050.37140.23870.064*
C120.29427 (10)0.1941 (3)0.02869 (10)0.0553 (4)
H120.31330.16040.08270.066*
C130.31354 (11)0.0410 (4)−0.02407 (12)0.0640 (5)
H130.3458−0.0972−0.00520.077*
C140.28593 (12)0.0892 (4)−0.10368 (12)0.0708 (5)
H140.2993−0.0153−0.13860.085*
C150.23842 (12)0.2924 (4)−0.13150 (10)0.0706 (5)
H150.21940.3250−0.18560.085*
C160.21843 (10)0.4497 (4)−0.08008 (9)0.0569 (4)
H160.18660.5886−0.09910.068*
C170.24637 (9)0.3976 (3)−0.00026 (8)0.0452 (3)
N0.19186 (8)0.7736 (3)0.16096 (8)0.0493 (3)
O10.23902 (7)0.31497 (19)0.17324 (6)0.0509 (3)
O20.33107 (6)0.6759 (2)0.16438 (6)0.0469 (3)
O30.22198 (7)0.5640 (2)0.04688 (6)0.0529 (3)
P0.24508 (2)0.56130 (6)0.14026 (2)0.04116 (13)
H0.2031 (11)0.915 (4)0.1566 (11)0.057 (5)*
U11U22U33U12U13U23
C10.0531 (10)0.0536 (10)0.1190 (17)−0.0082 (8)0.0356 (11)−0.0161 (11)
C20.072 (4)0.092 (4)0.175 (8)−0.012 (2)0.060 (5)−0.073 (4)
C30.058 (2)0.141 (5)0.107 (4)−0.013 (3)0.019 (2)−0.056 (4)
C40.072 (5)0.107 (5)0.170 (12)0.018 (4)0.052 (6)−0.029 (5)
C50.050 (2)0.147 (6)0.129 (5)−0.012 (3)0.022 (3)−0.027 (5)
C1A0.0531 (10)0.0536 (10)0.1190 (17)−0.0082 (8)0.0356 (11)−0.0161 (11)
C2A0.061 (4)0.38 (2)0.062 (3)−0.018 (9)0.034 (3)−0.024 (8)
C3A0.061 (3)0.210 (12)0.087 (4)0.012 (5)0.018 (3)0.046 (6)
C4A0.060 (7)0.28 (2)0.128 (10)−0.052 (9)0.058 (7)−0.058 (13)
C5A0.075 (5)0.165 (11)0.148 (8)0.014 (6)0.032 (5)0.035 (9)
C60.0413 (7)0.0400 (7)0.0492 (7)−0.0041 (6)0.0180 (6)0.0033 (6)
C70.0535 (8)0.0436 (8)0.0596 (9)0.0028 (7)0.0161 (7)−0.0015 (7)
C80.0679 (11)0.0583 (10)0.0613 (10)−0.0034 (8)0.0153 (8)−0.0124 (8)
C90.0566 (10)0.0737 (12)0.0567 (9)−0.0057 (9)0.0059 (8)0.0023 (9)
C100.0478 (8)0.0617 (10)0.0736 (11)0.0073 (8)0.0101 (8)0.0083 (9)
C110.0486 (8)0.0469 (8)0.0650 (10)0.0025 (7)0.0198 (7)−0.0024 (7)
C120.0640 (9)0.0521 (9)0.0489 (8)0.0033 (7)0.0180 (7)−0.0015 (7)
C130.0666 (11)0.0576 (10)0.0727 (11)0.0035 (8)0.0300 (9)−0.0089 (8)
C140.0743 (12)0.0815 (14)0.0667 (11)−0.0092 (10)0.0370 (10)−0.0217 (10)
C150.0744 (12)0.0967 (15)0.0435 (8)−0.0090 (11)0.0238 (8)−0.0067 (9)
C160.0545 (9)0.0676 (11)0.0463 (8)−0.0004 (8)0.0138 (7)0.0055 (7)
C170.0462 (7)0.0477 (8)0.0410 (7)−0.0069 (6)0.0138 (6)−0.0034 (6)
N0.0497 (7)0.0374 (7)0.0636 (8)−0.0043 (5)0.0227 (6)−0.0056 (6)
O10.0638 (6)0.0359 (5)0.0532 (6)−0.0033 (5)0.0199 (5)0.0019 (4)
O20.0486 (6)0.0486 (6)0.0459 (5)−0.0031 (4)0.0190 (4)0.0027 (4)
O30.0659 (7)0.0478 (6)0.0416 (5)0.0109 (5)0.0136 (5)0.0021 (4)
P0.0474 (2)0.0344 (2)0.0416 (2)−0.00097 (14)0.01477 (15)0.00036 (13)
C1—C31.365 (5)C6—O21.4088 (17)
C1—N1.458 (2)C7—C81.382 (2)
C1—C21.524 (6)C7—H70.9300
C1—H1A0.9800C8—C91.378 (3)
C2—C41.442 (16)C8—H80.9300
C2—H2A0.9700C9—C101.372 (3)
C2—H2B0.9700C9—H90.9300
C3—C51.499 (7)C10—C111.384 (2)
C3—H3A0.9700C10—H100.9300
C3—H3B0.9700C11—H110.9300
C4—C51.516 (16)C12—C171.377 (2)
C4—H4A0.9700C12—C131.381 (2)
C4—H4B0.9700C12—H120.9300
C5—H5A0.9700C13—C141.369 (3)
C5—H5B0.9700C13—H130.9300
C2A—C4A1.577 (19)C14—C151.369 (3)
C2A—H2A10.9700C14—H140.9300
C2A—H2A20.9700C15—C161.383 (3)
C3A—C5A1.472 (12)C15—H150.9300
C3A—H3A10.9700C16—C171.376 (2)
C3A—H3A20.9700C16—H160.9300
C4A—C5A1.37 (3)C17—O31.3968 (18)
C4A—H4A10.9700N—P1.6078 (14)
C4A—H4A20.9700N—H0.793 (19)
C5A—H5A10.9700O1—P1.4630 (11)
C5A—H5A20.9700O2—P1.5839 (10)
C6—C111.372 (2)O3—P1.5838 (11)
C6—C71.373 (2)
C3—C1—N122.8 (3)C11—C6—C7122.00 (15)
C3—C1—C2106.8 (4)C11—C6—O2118.51 (13)
N—C1—C2114.5 (3)C7—C6—O2119.39 (13)
C3—C1—H1A103.5C6—C7—C8118.69 (15)
N—C1—H1A103.5C6—C7—H7120.7
C2—C1—H1A103.5C8—C7—H7120.7
C4—C2—C1106.9 (6)C9—C8—C7120.23 (17)
C4—C2—H2A110.3C9—C8—H8119.9
C1—C2—H2A110.4C7—C8—H8119.9
C4—C2—H2B110.3C10—C9—C8120.07 (17)
C1—C2—H2B110.3C10—C9—H9120.0
H2A—C2—H2B108.6C8—C9—H9120.0
C1—C3—C5106.9 (4)C9—C10—C11120.43 (17)
C1—C3—H3A110.3C9—C10—H10119.8
C5—C3—H3A110.3C11—C10—H10119.8
C1—C3—H3B110.3C6—C11—C10118.57 (16)
C5—C3—H3B110.3C6—C11—H11120.7
H3A—C3—H3B108.6C10—C11—H11120.7
C2—C4—C5105.9 (6)C17—C12—C13118.71 (16)
C2—C4—H4A110.6C17—C12—H12120.6
C5—C4—H4A110.5C13—C12—H12120.6
C2—C4—H4B110.5C14—C13—C12121.09 (18)
C5—C4—H4B110.6C14—C13—H13119.5
H4A—C4—H4B108.7C12—C13—H13119.5
C3—C5—C4104.2 (6)C13—C14—C15119.48 (17)
C3—C5—H5A110.9C13—C14—H14120.3
C4—C5—H5A110.9C15—C14—H14120.3
C3—C5—H5B110.9C14—C15—C16120.75 (17)
C4—C5—H5B110.9C14—C15—H15119.6
H5A—C5—H5B108.9C16—C15—H15119.6
C4A—C2A—H2A1110.5C17—C16—C15118.99 (18)
C4A—C2A—H2A2110.6C17—C16—H16120.5
H2A1—C2A—H2A2108.7C15—C16—H16120.5
C5A—C3A—H3A1111.4C12—C17—C16120.99 (15)
C5A—C3A—H3A2111.3C12—C17—O3124.08 (13)
H3A1—C3A—H3A2109.2C16—C17—O3114.93 (14)
C5A—C4A—C2A106.1 (12)C1—N—P121.36 (12)
C5A—C4A—H4A1110.5C1—N—H117.0 (14)
C2A—C4A—H4A1110.5P—N—H117.3 (14)
C5A—C4A—H4A2110.5C6—O2—P121.30 (8)
C2A—C4A—H4A2110.5C17—O3—P127.62 (10)
H4A1—C4A—H4A2108.7O1—P—O2115.93 (6)
C4A—C5A—C3A108.6 (9)O1—P—O3114.03 (6)
C4A—C5A—H5A1110.0O2—P—O399.72 (6)
C3A—C5A—H5A1109.9O1—P—N114.24 (7)
C4A—C5A—H5A2110.0O2—P—N105.55 (6)
C3A—C5A—H5A2110.0O3—P—N105.88 (7)
H5A1—C5A—H5A2108.4
C3—C1—C2—C418.7 (10)C13—C12—C17—C16−0.5 (2)
N—C1—C2—C4158.1 (8)C13—C12—C17—O3179.15 (15)
N—C1—C3—C5−165.1 (4)C15—C16—C17—C120.8 (3)
C2—C1—C3—C5−29.9 (7)C15—C16—C17—O3−178.89 (15)
C1—C2—C4—C50.3 (13)C3—C1—N—P−57.8 (5)
C1—C3—C5—C429.8 (11)C2—C1—N—P170.1 (4)
C2—C4—C5—C3−17.2 (14)C11—C6—O2—P98.41 (14)
C2A—C4A—C5A—C3A7(2)C7—C6—O2—P−85.20 (15)
C11—C6—C7—C8−1.3 (2)C12—C17—O3—P2.0 (2)
O2—C6—C7—C8−177.58 (15)C16—C17—O3—P−178.33 (11)
C6—C7—C8—C90.7 (3)C6—O2—P—O1−49.72 (12)
C7—C8—C9—C100.4 (3)C6—O2—P—O3−172.58 (10)
C8—C9—C10—C11−1.1 (3)C6—O2—P—N77.80 (12)
C7—C6—C11—C100.7 (2)C17—O3—P—O1−46.75 (15)
O2—C6—C11—C10177.00 (14)C17—O3—P—O277.45 (13)
C9—C10—C11—C60.5 (3)C17—O3—P—N−173.19 (12)
C17—C12—C13—C140.1 (3)C1—N—P—O1−43.33 (18)
C12—C13—C14—C150.0 (3)C1—N—P—O2−171.87 (15)
C13—C14—C15—C160.3 (3)C1—N—P—O382.99 (16)
C14—C15—C16—C17−0.7 (3)
D—H···AD—HH···AD···AD—H···A
N—H···O1i0.790 (19)2.23 (2)3.0039 (17)167.7 (19)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N—H⋯O1i0.790 (19)2.23 (2)3.0039 (17)167.7 (19)

Symmetry code: (i) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diphenyl (2-chloro-benzyl-amido)-phosphate.

Authors:  Mehrdad Pourayoubi; Poorya Zargaran; Arnold L Rheingold; James A Golen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04
  2 in total

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