| Literature DB >> 21522756 |
Shu-Jiao Chen1, Jian-Feng Zhang.
Abstract
In the title compound, C(13)H(15)N(3)O·H(2)O, the dihedral angle between theEntities:
Year: 2010 PMID: 21522756 PMCID: PMC3050230 DOI: 10.1107/S160053681005035X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C13H15N3O·H2O | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 13460 reflections |
| θ = 3.2–27.4° | |
| µ = 0.08 mm−1 | |
| Chip, colorless | |
| 0.45 × 0.23 × 0.12 mm |
| Rigaku R-AXIS RAPID diffractometer | 1815 independent reflections |
| Radiation source: fine-focus sealed tube | 1323 reflections with |
| graphite | |
| ω scans | θmax = 27.4°, θmin = 3.2° |
| Absorption correction: multi-scan ( | |
| 13414 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.001 | |
| 1815 reflections | Δρmax = 0.23 e Å−3 |
| 164 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.048 (6) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.1503 (3) | 0.37278 (16) | 0.44426 (14) | 0.0598 (6) | |
| N3 | 0.6165 (4) | 0.63188 (17) | 0.33836 (14) | 0.0455 (6) | |
| N2 | 0.4723 (4) | 0.58241 (16) | 0.29243 (14) | 0.0456 (6) | |
| C7 | 0.7043 (4) | 0.7022 (2) | 0.28840 (17) | 0.0432 (6) | |
| C1 | 0.0612 (4) | 0.4538 (2) | 0.42065 (18) | 0.0451 (7) | |
| C3 | 0.3511 (4) | 0.4985 (2) | 0.32841 (19) | 0.0505 (7) | |
| H3A | 0.4382 | 0.4554 | 0.3625 | 0.061* | |
| H3B | 0.2976 | 0.4534 | 0.2861 | 0.061* | |
| N1 | −0.1361 (4) | 0.4692 (2) | 0.43135 (16) | 0.0572 (7) | |
| H1A | −0.2084 | 0.4220 | 0.4556 | 0.069* | |
| H1B | −0.1926 | 0.5264 | 0.4141 | 0.069* | |
| C6 | 0.6151 (5) | 0.6976 (2) | 0.21225 (18) | 0.0529 (7) | |
| H6A | 0.6495 | 0.7386 | 0.1677 | 0.063* | |
| C8 | 0.8697 (5) | 0.7707 (2) | 0.31861 (18) | 0.0463 (7) | |
| C2 | 0.1763 (5) | 0.5407 (2) | 0.3778 (2) | 0.0578 (8) | |
| H2A | 0.0830 | 0.5788 | 0.3428 | 0.069* | |
| H2B | 0.2287 | 0.5905 | 0.4172 | 0.069* | |
| C4 | 0.4663 (5) | 0.6208 (2) | 0.21594 (18) | 0.0509 (7) | |
| O2 | −0.4388 (4) | 0.32706 (19) | 0.4938 (2) | 0.0888 (10) | |
| H2D | −0.4329 | 0.2662 | 0.5146 | 0.168* | |
| H2C | −0.5655 | 0.3375 | 0.4857 | 0.092* | |
| C9 | 0.8839 (5) | 0.7964 (3) | 0.4002 (2) | 0.0596 (8) | |
| H9A | 0.7863 | 0.7708 | 0.4360 | 0.072* | |
| C12 | 1.1724 (6) | 0.8742 (3) | 0.2958 (3) | 0.0849 (12) | |
| H12A | 1.2706 | 0.9003 | 0.2605 | 0.102* | |
| C13 | 1.0158 (5) | 0.8108 (2) | 0.2666 (2) | 0.0612 (9) | |
| H13A | 1.0090 | 0.7952 | 0.2119 | 0.073* | |
| C10 | 1.0405 (6) | 0.8592 (3) | 0.4285 (2) | 0.0767 (11) | |
| H10A | 1.0489 | 0.8748 | 0.4832 | 0.092* | |
| C5 | 0.3188 (6) | 0.5832 (3) | 0.1551 (2) | 0.0749 (11) | |
| H5A | 0.2362 | 0.5278 | 0.1778 | 0.112* | |
| H5B | 0.3913 | 0.5563 | 0.1092 | 0.112* | |
| H5C | 0.2328 | 0.6410 | 0.1387 | 0.112* | |
| C11 | 1.1840 (7) | 0.8988 (4) | 0.3764 (3) | 0.0923 (14) | |
| H11A | 1.2884 | 0.9421 | 0.3955 | 0.111* |
| O1 | 0.0465 (11) | 0.0555 (11) | 0.0775 (15) | 0.0054 (11) | 0.0067 (12) | 0.0248 (11) |
| N3 | 0.0438 (12) | 0.0434 (12) | 0.0493 (13) | −0.0047 (11) | 0.0011 (11) | 0.0076 (10) |
| N2 | 0.0465 (13) | 0.0423 (11) | 0.0479 (13) | −0.0057 (11) | 0.0041 (12) | 0.0079 (10) |
| C7 | 0.0445 (14) | 0.0357 (12) | 0.0495 (15) | −0.0022 (12) | 0.0054 (14) | 0.0087 (12) |
| C1 | 0.0418 (15) | 0.0457 (14) | 0.0480 (16) | 0.0001 (13) | 0.0033 (13) | 0.0050 (13) |
| C3 | 0.0473 (15) | 0.0414 (13) | 0.0628 (18) | −0.0064 (14) | 0.0083 (15) | 0.0044 (13) |
| N1 | 0.0415 (13) | 0.0558 (14) | 0.0742 (18) | 0.0034 (12) | 0.0085 (14) | 0.0194 (13) |
| C6 | 0.0634 (18) | 0.0479 (14) | 0.0475 (16) | −0.0078 (15) | 0.0016 (16) | 0.0092 (13) |
| C8 | 0.0443 (14) | 0.0376 (12) | 0.0569 (17) | −0.0012 (12) | 0.0000 (15) | 0.0088 (12) |
| C2 | 0.0488 (17) | 0.0455 (14) | 0.079 (2) | 0.0016 (15) | 0.0151 (17) | 0.0110 (15) |
| C4 | 0.0569 (17) | 0.0487 (14) | 0.0470 (15) | −0.0042 (15) | 0.0000 (15) | 0.0032 (13) |
| O2 | 0.0472 (13) | 0.0764 (16) | 0.143 (3) | −0.0005 (12) | 0.0038 (16) | 0.0493 (17) |
| C9 | 0.0590 (19) | 0.0586 (17) | 0.0611 (19) | −0.0053 (17) | 0.0007 (17) | 0.0017 (15) |
| C12 | 0.060 (2) | 0.102 (3) | 0.092 (3) | −0.030 (2) | 0.008 (2) | 0.011 (2) |
| C13 | 0.0547 (18) | 0.0627 (18) | 0.066 (2) | −0.0080 (17) | 0.0053 (17) | 0.0067 (16) |
| C10 | 0.073 (2) | 0.084 (2) | 0.074 (2) | −0.014 (2) | −0.014 (2) | −0.007 (2) |
| C5 | 0.086 (3) | 0.078 (2) | 0.060 (2) | −0.019 (2) | −0.014 (2) | 0.0029 (18) |
| C11 | 0.069 (3) | 0.109 (3) | 0.098 (3) | −0.033 (3) | −0.011 (2) | −0.003 (3) |
| O1—C1 | 1.240 (3) | C2—H2A | 0.9700 |
| N3—C7 | 1.344 (3) | C2—H2B | 0.9700 |
| N3—N2 | 1.365 (3) | C4—C5 | 1.476 (4) |
| N2—C4 | 1.360 (4) | O2—H2D | 0.8424 |
| N2—C3 | 1.451 (3) | O2—H2C | 0.8505 |
| C7—C6 | 1.394 (4) | C9—C10 | 1.378 (5) |
| C7—C8 | 1.473 (4) | C9—H9A | 0.9300 |
| C1—N1 | 1.319 (4) | C12—C11 | 1.376 (6) |
| C1—C2 | 1.509 (4) | C12—C13 | 1.388 (5) |
| C3—C2 | 1.505 (4) | C12—H12A | 0.9300 |
| C3—H3A | 0.9700 | C13—H13A | 0.9300 |
| C3—H3B | 0.9700 | C10—C11 | 1.371 (6) |
| N1—H1A | 0.8600 | C10—H10A | 0.9300 |
| N1—H1B | 0.8600 | C5—H5A | 0.9600 |
| C6—C4 | 1.375 (4) | C5—H5B | 0.9600 |
| C6—H6A | 0.9300 | C5—H5C | 0.9600 |
| C8—C13 | 1.385 (4) | C11—H11A | 0.9300 |
| C8—C9 | 1.397 (4) | ||
| C7—N3—N2 | 104.6 (2) | C3—C2—H2B | 109.1 |
| C4—N2—N3 | 112.3 (2) | C1—C2—H2B | 109.1 |
| C4—N2—C3 | 128.9 (3) | H2A—C2—H2B | 107.9 |
| N3—N2—C3 | 118.8 (2) | N2—C4—C6 | 105.8 (3) |
| N3—C7—C6 | 110.7 (2) | N2—C4—C5 | 122.9 (3) |
| N3—C7—C8 | 119.4 (2) | C6—C4—C5 | 131.3 (3) |
| C6—C7—C8 | 129.9 (2) | H2D—O2—H2C | 104.5 |
| O1—C1—N1 | 122.7 (3) | C10—C9—C8 | 120.9 (3) |
| O1—C1—C2 | 120.8 (3) | C10—C9—H9A | 119.6 |
| N1—C1—C2 | 116.5 (3) | C8—C9—H9A | 119.6 |
| N2—C3—C2 | 112.5 (2) | C11—C12—C13 | 120.7 (4) |
| N2—C3—H3A | 109.1 | C11—C12—H12A | 119.6 |
| C2—C3—H3A | 109.1 | C13—C12—H12A | 119.6 |
| N2—C3—H3B | 109.1 | C8—C13—C12 | 120.1 (3) |
| C2—C3—H3B | 109.1 | C8—C13—H13A | 119.9 |
| H3A—C3—H3B | 107.8 | C12—C13—H13A | 119.9 |
| C1—N1—H1A | 120.0 | C11—C10—C9 | 120.3 (4) |
| C1—N1—H1B | 120.0 | C11—C10—H10A | 119.9 |
| H1A—N1—H1B | 120.0 | C9—C10—H10A | 119.9 |
| C4—C6—C7 | 106.6 (3) | C4—C5—H5A | 109.5 |
| C4—C6—H6A | 126.7 | C4—C5—H5B | 109.5 |
| C7—C6—H6A | 126.7 | H5A—C5—H5B | 109.5 |
| C13—C8—C9 | 118.4 (3) | C4—C5—H5C | 109.5 |
| C13—C8—C7 | 120.6 (3) | H5A—C5—H5C | 109.5 |
| C9—C8—C7 | 121.0 (3) | H5B—C5—H5C | 109.5 |
| C3—C2—C1 | 112.4 (2) | C10—C11—C12 | 119.6 (4) |
| C3—C2—H2A | 109.1 | C10—C11—H11A | 120.2 |
| C1—C2—H2A | 109.1 | C12—C11—H11A | 120.2 |
| H··· | ||||
| N1—H1A···O2 | 0.86 | 2.03 | 2.867 (3) | 165. |
| N1—H1B···N3i | 0.86 | 2.22 | 3.036 (3) | 159. |
| O2—H2D···O1ii | 0.84 | 1.96 | 2.783 (3) | 166.2 |
| O2—H2C···O1i | 0.85 | 2.03 | 2.872 (3) | 168.5 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.03 | 2.867 (3) | 165 |
| N1—H1 | 0.86 | 2.22 | 3.036 (3) | 159 |
| O2—H2 | 0.84 | 1.96 | 2.783 (3) | 166.2 |
| O2—H2 | 0.85 | 2.03 | 2.872 (3) | 168.5 |
Symmetry codes: (i) ; (ii) .