| Literature DB >> 21577897 |
Jian-Feng Zhang1, Feng Huang, Shu-Jiao Chen.
Abstract
In the crystal of the title compound, C(8)H(13)N(3)O, mol-ecules are linked by inter-molecular N-H⋯N and N-H⋯O hydrogen bonds into a three-dimensional network. Additional stabilization is provided by weak inter-molecular C-H⋯O hydrogen bonds.Entities:
Year: 2009 PMID: 21577897 PMCID: PMC2970388 DOI: 10.1107/S160053680903342X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H13N3O | |
| Orthorhombic, | Mo |
| Hall symbol: F 2 -2d | Cell parameters from 4623 reflections |
| θ = 3.1–27.5° | |
| µ = 0.09 mm−1 | |
| Block, colorless | |
| 0.47 × 0.37 × 0.36 mm |
| Rigaku R-AXIS RAPID diffractometer | 1067 independent reflections |
| Radiation source: fine-focus sealed tube | 890 reflections with |
| graphite | |
| Detector resolution: 0 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 4623 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 1067 reflections | Δρmax = 0.14 e Å−3 |
| 112 parameters | Δρmin = −0.19 e Å−3 |
| 1 restraint | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0108 (8) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.02008 (12) | 0.12376 (4) | 0.3335 (3) | 0.0530 (5) | |
| N1 | −0.08464 (14) | 0.07777 (6) | 0.2532 (4) | 0.0530 (6) | |
| H1A | −0.1185 | 0.0952 | 0.1991 | 0.064* | |
| H1B | −0.1013 | 0.0530 | 0.2556 | 0.064* | |
| N2 | 0.15555 (13) | 0.04420 (5) | 0.1786 (2) | 0.0364 (5) | |
| N3 | 0.12698 (13) | 0.00771 (5) | 0.1195 (3) | 0.0413 (5) | |
| C1 | −0.00707 (15) | 0.08880 (6) | 0.3326 (3) | 0.0380 (5) | |
| C2 | 0.04624 (16) | 0.05620 (6) | 0.4265 (3) | 0.0435 (6) | |
| H2A | 0.0163 | 0.0307 | 0.4032 | 0.052* | |
| H2B | 0.0441 | 0.0609 | 0.5551 | 0.052* | |
| C3 | 0.14666 (15) | 0.05349 (7) | 0.3680 (3) | 0.0391 (5) | |
| H3B | 0.1771 | 0.0788 | 0.3924 | 0.047* | |
| H3A | 0.1775 | 0.0329 | 0.4379 | 0.047* | |
| C4 | 0.2226 (2) | 0.10885 (7) | 0.0702 (5) | 0.0622 (8) | |
| H4B | 0.2746 | 0.1082 | 0.1504 | 0.093* | |
| H4C | 0.1747 | 0.1253 | 0.1210 | 0.093* | |
| H4A | 0.2414 | 0.1198 | −0.0434 | 0.093* | |
| C5 | 0.18687 (15) | 0.06742 (6) | 0.0435 (3) | 0.0422 (5) | |
| C6 | 0.17798 (19) | 0.04516 (8) | −0.1109 (4) | 0.0505 (6) | |
| H6A | 0.1938 | 0.0529 | −0.2270 | 0.061* | |
| C7 | 0.14038 (16) | 0.00856 (7) | −0.0582 (3) | 0.0438 (6) | |
| C8 | 0.1147 (2) | −0.02660 (9) | −0.1705 (5) | 0.0628 (8) | |
| H8A | 0.1465 | −0.0499 | −0.1274 | 0.094* | |
| H8B | 0.1319 | −0.0217 | −0.2932 | 0.094* | |
| H8C | 0.0491 | −0.0309 | −0.1634 | 0.094* |
| O1 | 0.0548 (10) | 0.0323 (7) | 0.0719 (13) | −0.0018 (6) | −0.0196 (10) | −0.0002 (8) |
| N1 | 0.0488 (10) | 0.0381 (9) | 0.0720 (16) | −0.0038 (8) | −0.0163 (12) | 0.0039 (11) |
| N2 | 0.0386 (10) | 0.0338 (10) | 0.0369 (10) | 0.0008 (7) | −0.0009 (9) | −0.0020 (8) |
| N3 | 0.0410 (10) | 0.0342 (9) | 0.0486 (12) | 0.0007 (7) | −0.0011 (10) | −0.0057 (8) |
| C1 | 0.0391 (11) | 0.0335 (9) | 0.0415 (12) | 0.0025 (8) | 0.0025 (10) | −0.0037 (9) |
| C2 | 0.0473 (13) | 0.0385 (11) | 0.0447 (13) | 0.0024 (9) | 0.0045 (11) | 0.0049 (10) |
| C3 | 0.0419 (12) | 0.0367 (10) | 0.0387 (12) | 0.0061 (9) | −0.0027 (11) | −0.0005 (9) |
| C4 | 0.0787 (19) | 0.0442 (13) | 0.0636 (18) | −0.0134 (12) | 0.0057 (17) | 0.0057 (13) |
| C5 | 0.0425 (11) | 0.0419 (10) | 0.0422 (13) | −0.0005 (9) | 0.0004 (12) | 0.0018 (10) |
| C6 | 0.0521 (14) | 0.0604 (16) | 0.0390 (12) | −0.0001 (11) | 0.0008 (12) | 0.0009 (11) |
| C7 | 0.0365 (11) | 0.0509 (14) | 0.0441 (13) | 0.0051 (9) | −0.0047 (11) | −0.0113 (11) |
| C8 | 0.0568 (15) | 0.0671 (16) | 0.0645 (19) | 0.0018 (12) | −0.0065 (15) | −0.0243 (15) |
| O1—C1 | 1.232 (2) | C3—H3A | 0.9700 |
| N1—C1 | 1.320 (3) | C4—C5 | 1.490 (3) |
| N1—H1A | 0.8598 | C4—H4B | 0.9600 |
| N1—H1B | 0.8603 | C4—H4C | 0.9600 |
| N2—C5 | 1.347 (3) | C4—H4A | 0.9600 |
| N2—N3 | 1.359 (3) | C5—C6 | 1.373 (4) |
| N2—C3 | 1.448 (3) | C6—C7 | 1.394 (4) |
| N3—C7 | 1.335 (3) | C6—H6A | 0.9300 |
| C1—C2 | 1.505 (3) | C7—C8 | 1.488 (4) |
| C2—C3 | 1.518 (3) | C8—H8A | 0.9600 |
| C2—H2A | 0.9700 | C8—H8B | 0.9600 |
| C2—H2B | 0.9700 | C8—H8C | 0.9600 |
| C3—H3B | 0.9700 | ||
| C1—N1—H1A | 120.2 | C5—C4—H4B | 109.5 |
| C1—N1—H1B | 119.8 | C5—C4—H4C | 109.5 |
| H1A—N1—H1B | 120.0 | H4B—C4—H4C | 109.5 |
| C5—N2—N3 | 112.13 (18) | C5—C4—H4A | 109.5 |
| C5—N2—C3 | 129.18 (18) | H4B—C4—H4A | 109.5 |
| N3—N2—C3 | 118.66 (18) | H4C—C4—H4A | 109.5 |
| C7—N3—N2 | 104.88 (19) | N2—C5—C6 | 106.28 (19) |
| O1—C1—N1 | 122.5 (2) | N2—C5—C4 | 123.4 (2) |
| O1—C1—C2 | 121.3 (2) | C6—C5—C4 | 130.3 (2) |
| N1—C1—C2 | 116.14 (18) | C5—C6—C7 | 106.0 (2) |
| C1—C2—C3 | 113.56 (19) | C5—C6—H6A | 127.0 |
| C1—C2—H2A | 108.9 | C7—C6—H6A | 127.0 |
| C3—C2—H2A | 108.9 | N3—C7—C6 | 110.7 (2) |
| C1—C2—H2B | 108.9 | N3—C7—C8 | 120.2 (2) |
| C3—C2—H2B | 108.9 | C6—C7—C8 | 129.1 (3) |
| H2A—C2—H2B | 107.7 | C7—C8—H8A | 109.5 |
| N2—C3—C2 | 112.11 (19) | C7—C8—H8B | 109.5 |
| N2—C3—H3B | 109.2 | H8A—C8—H8B | 109.5 |
| C2—C3—H3B | 109.2 | C7—C8—H8C | 109.5 |
| N2—C3—H3A | 109.2 | H8A—C8—H8C | 109.5 |
| C2—C3—H3A | 109.2 | H8B—C8—H8C | 109.5 |
| H3B—C3—H3A | 107.9 |
| H··· | ||||
| N1—H1A···O1i | 0.86 | 2.10 | 2.936 (3) | 164 |
| N1—H1B···N3ii | 0.86 | 2.30 | 3.084 (3) | 152 |
| C3—H3B···O1iii | 0.97 | 2.52 | 3.413 (3) | 154 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.10 | 2.936 (3) | 164 |
| N1—H1 | 0.86 | 2.30 | 3.084 (3) | 152 |
| C3—H3 | 0.97 | 2.52 | 3.413 (3) | 154 |
Symmetry codes: (i) ; (ii) ; (iii) .