Literature DB >> 21589458

4-Carbamoylpiperidinium acetate monohydrate.

Graham Smith1, Urs D Wermuth.   

Abstract

In the structure of the title compound, C(6)H(13)N(2)O(+)·C(2)H(3)O(2) (-)·H(2)O, the amide H atoms of the cations form centrosymmetric cyclic hydrogen-bonding associations incorporating two water mol-ecules [graph set R(4) (2)(8)], which are conjoint with cyclic water-bridged amide-amide associations [R(4) (4)(12)] and larger R(4) (4)(20) associations involving the water mol-ecule and the acetate anions, which bridge through the piperidinium H-bond donors, giving an overall three-dimensional framework structure.

Entities:  

Year:  2010        PMID: 21589458      PMCID: PMC3011593          DOI: 10.1107/S1600536810045538

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural data on isonipecotamide salts, see: Smith et al. (2010 ▶); Smith & Wermuth (2010a ▶,b ▶). For graph-set motifs, see: Etter et al. (1990 ▶).

Experimental

Crystal data

C6H13N2O+·C2H3O2 −·H2O M = 206.24 Triclinic, a = 5.8219 (2) Å b = 7.7675 (3) Å c = 12.4022 (5) Å α = 81.088 (4)° β = 78.763 (4)° γ = 76.202 (4)° V = 530.75 (4) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 200 K 0.40 × 0.35 × 0.15 mm

Data collection

Oxford Diffraction Gemini-S Ultra CCD-detector diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.962, T max = 0.980 6385 measured reflections 2087 independent reflections 1602 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.105 S = 0.93 2087 reflections 151 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.19 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810045538/nk2071sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810045538/nk2071Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H13N2O+·C2H3O2·H2OZ = 2
Mr = 206.24F(000) = 224
Triclinic, P1Dx = 1.291 Mg m3
Hall symbol: -P 1Melting point: 409 K
a = 5.8219 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 7.7675 (3) ÅCell parameters from 3330 reflections
c = 12.4022 (5) Åθ = 3.4–28.8°
α = 81.088 (4)°µ = 0.10 mm1
β = 78.763 (4)°T = 200 K
γ = 76.202 (4)°Plate, colourless
V = 530.75 (4) Å30.40 × 0.35 × 0.15 mm
Oxford Diffraction Gemini-S Ultra CCD-detector diffractometer2087 independent reflections
Radiation source: Enhance (Mo) X-ray source1602 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 16.977 pixels mm-1θmax = 26.0°, θmin = 3.4°
ω scansh = −7→7
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −9→9
Tmin = 0.962, Tmax = 0.980l = −15→15
6385 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 0.93w = 1/[σ2(Fo2) + (0.0733P)2 + 0.0214P] where P = (Fo2 + 2Fc2)/3
2087 reflections(Δ/σ)max < 0.001
151 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O41A0.48609 (16)0.38864 (13)0.35243 (9)0.0344 (3)
N1A0.9204 (2)0.82745 (15)0.19803 (10)0.0274 (4)
N41A0.7954 (2)0.21185 (16)0.42814 (10)0.0297 (4)
C2A0.9917 (3)0.67001 (19)0.13552 (11)0.0290 (4)
C3A0.8415 (2)0.53343 (18)0.18703 (11)0.0264 (4)
C4A0.8642 (2)0.47820 (17)0.30875 (11)0.0223 (4)
C5A0.8010 (3)0.64377 (18)0.37045 (11)0.0283 (4)
C6A0.9525 (3)0.77742 (19)0.31557 (12)0.0319 (5)
C41A0.6994 (2)0.35378 (17)0.36412 (11)0.0236 (4)
O111.43436 (17)−0.04485 (13)0.19784 (8)0.0320 (3)
O121.14721 (18)0.09626 (14)0.10165 (9)0.0395 (4)
C11.3462 (2)0.08082 (17)0.12972 (11)0.0246 (4)
C21.4884 (3)0.2219 (2)0.08190 (13)0.0375 (5)
O1W1.31002 (18)0.08400 (15)0.40367 (9)0.0314 (3)
H4A1.030300.416900.313800.0270*
H11A1.005 (3)0.917 (2)0.1664 (15)0.050 (5)*
H12A0.757 (3)0.882 (2)0.1956 (14)0.043 (5)*
H21A1.160000.616600.136100.0350*
H22A0.969500.707000.059200.0350*
H31A0.894200.429100.147200.0320*
H32A0.674800.583900.180700.0320*
H41A0.958 (3)0.178 (2)0.4274 (13)0.036 (4)*
H42A0.701 (3)0.138 (2)0.4646 (14)0.045 (5)*
H51A0.632700.699200.371600.0340*
H52A0.827100.608500.446400.0340*
H61A0.905200.883000.354200.0380*
H62A1.120100.725600.319400.0380*
H211.429400.286900.016900.0450*
H221.654500.166100.062700.0450*
H231.471800.302500.135700.0450*
H11W1.355 (4)0.031 (3)0.3388 (19)0.069 (7)*
H12W1.368 (4)0.175 (3)0.3891 (17)0.062 (6)*
U11U22U33U12U13U23
O41A0.0236 (5)0.0304 (6)0.0475 (6)−0.0104 (4)−0.0061 (4)0.0086 (5)
N1A0.0228 (6)0.0200 (6)0.0383 (7)−0.0088 (5)−0.0057 (5)0.0076 (5)
N41A0.0279 (7)0.0236 (6)0.0349 (7)−0.0100 (5)−0.0026 (5)0.0083 (5)
C2A0.0309 (7)0.0300 (8)0.0250 (7)−0.0108 (6)−0.0021 (6)0.0039 (6)
C3A0.0310 (7)0.0259 (7)0.0235 (7)−0.0116 (6)−0.0025 (5)−0.0007 (6)
C4A0.0192 (6)0.0198 (6)0.0269 (7)−0.0060 (5)−0.0038 (5)0.0029 (5)
C5A0.0345 (8)0.0271 (7)0.0247 (7)−0.0124 (6)−0.0020 (6)−0.0016 (6)
C6A0.0391 (8)0.0270 (8)0.0336 (8)−0.0155 (6)−0.0057 (6)−0.0032 (6)
C41A0.0239 (7)0.0202 (7)0.0256 (7)−0.0065 (5)−0.0007 (5)−0.0008 (6)
O110.0274 (5)0.0289 (5)0.0362 (6)−0.0050 (4)−0.0060 (4)0.0061 (5)
O120.0333 (6)0.0339 (6)0.0535 (7)−0.0167 (5)−0.0175 (5)0.0165 (5)
C10.0250 (7)0.0227 (7)0.0257 (7)−0.0074 (5)−0.0012 (5)−0.0015 (6)
C20.0368 (8)0.0335 (8)0.0450 (9)−0.0182 (7)−0.0080 (7)0.0054 (7)
O1W0.0325 (6)0.0304 (6)0.0324 (6)−0.0149 (5)−0.0066 (4)0.0073 (5)
O41A—C41A1.2386 (16)C4A—C41A1.5186 (18)
O11—C11.2667 (16)C5A—C6A1.518 (2)
O12—C11.2473 (17)C2A—H21A0.9700
O1W—H12W0.84 (2)C2A—H22A0.9700
O1W—H11W0.92 (2)C3A—H32A0.9700
N1A—C6A1.4856 (19)C3A—H31A0.9700
N1A—C2A1.4816 (18)C4A—H4A0.9800
N41A—C41A1.3289 (18)C5A—H51A0.9700
N1A—H12A0.949 (18)C5A—H52A0.9700
N1A—H11A0.940 (17)C6A—H62A0.9700
N41A—H41A0.919 (18)C6A—H61A0.9700
N41A—H42A0.899 (17)C1—C21.509 (2)
C2A—C3A1.521 (2)C2—H230.9600
C3A—C4A1.5266 (19)C2—H210.9600
C4A—C5A1.5311 (19)C2—H220.9600
H11W—O1W—H12W104 (2)C2A—C3A—H32A109.00
C2A—N1A—C6A111.60 (11)C4A—C3A—H32A109.00
H11A—N1A—H12A104.9 (14)H31A—C3A—H32A108.00
C6A—N1A—H11A109.2 (11)C4A—C3A—H31A109.00
C2A—N1A—H11A112.5 (10)C5A—C4A—H4A109.00
C2A—N1A—H12A109.7 (10)C41A—C4A—H4A109.00
C6A—N1A—H12A108.8 (10)C3A—C4A—H4A109.00
C41A—N41A—H42A118.4 (11)C4A—C5A—H51A109.00
C41A—N41A—H41A121.8 (10)C6A—C5A—H51A109.00
H41A—N41A—H42A119.1 (15)C6A—C5A—H52A109.00
N1A—C2A—C3A110.23 (12)C4A—C5A—H52A109.00
C2A—C3A—C4A110.91 (11)H51A—C5A—H52A108.00
C3A—C4A—C41A111.67 (10)N1A—C6A—H62A110.00
C5A—C4A—C41A108.66 (11)C5A—C6A—H61A110.00
C3A—C4A—C5A109.87 (11)C5A—C6A—H62A110.00
C4A—C5A—C6A111.11 (12)H61A—C6A—H62A108.00
N1A—C6A—C5A109.84 (13)N1A—C6A—H61A110.00
O41A—C41A—C4A120.90 (12)O11—C1—O12123.79 (12)
O41A—C41A—N41A122.94 (12)O11—C1—C2117.89 (12)
N41A—C41A—C4A116.11 (11)O12—C1—C2118.31 (12)
N1A—C2A—H21A110.00C1—C2—H22109.00
C3A—C2A—H21A110.00C1—C2—H23109.00
C3A—C2A—H22A110.00C1—C2—H21109.00
H21A—C2A—H22A108.00H21—C2—H23109.00
N1A—C2A—H22A110.00H22—C2—H23109.00
C2A—C3A—H31A109.00H21—C2—H22109.00
C6A—N1A—C2A—C3A59.57 (16)C41A—C4A—C5A—C6A−177.38 (12)
C2A—N1A—C6A—C5A−59.60 (16)C3A—C4A—C41A—O41A−47.52 (17)
N1A—C2A—C3A—C4A−56.87 (15)C3A—C4A—C41A—N41A135.05 (12)
C2A—C3A—C4A—C5A54.57 (15)C5A—C4A—C41A—O41A73.82 (16)
C2A—C3A—C4A—C41A175.21 (11)C5A—C4A—C41A—N41A−103.61 (14)
C3A—C4A—C5A—C6A−54.94 (16)C4A—C5A—C6A—N1A57.10 (16)
D—H···AD—HH···AD···AD—H···A
N1A—H11A···O12i0.940 (17)1.793 (17)2.7311 (16)175.8 (17)
N1A—H12A···O11ii0.949 (18)1.824 (18)2.7666 (16)171.8 (14)
N41A—H41A···O1W0.919 (18)1.984 (18)2.8939 (17)170.2 (15)
N41A—H42A···O1Wiii0.899 (17)2.188 (16)2.9491 (16)142.1 (15)
O1W—H11W···O110.92 (2)1.87 (2)2.7871 (15)172 (2)
O1W—H12W···O41Aiv0.84 (2)1.90 (2)2.7370 (15)177 (2)
C2A—H22A···O12v0.972.423.3428 (18)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1A—H11A⋯O12i0.940 (17)1.793 (17)2.7311 (16)175.8 (17)
N1A—H12A⋯O11ii0.949 (18)1.824 (18)2.7666 (16)171.8 (14)
N41A—H41A⋯O1W0.919 (18)1.984 (18)2.8939 (17)170.2 (15)
N41A—H42A⋯O1Wiii0.899 (17)2.188 (16)2.9491 (16)142.1 (15)
O1W—H11W⋯O110.92 (2)1.87 (2)2.7871 (15)172 (2)
O1W—H12W⋯O41Aiv0.84 (2)1.90 (2)2.7370 (15)177 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  Bis(4-carbamoylpiperidinium) biphenyl-4,4'-disulfonate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  4 in total

1.  Bis(4-carbamoylpiperidinium) biphenyl-4,4'-disulfonate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13

2.  4-Carbamoylpiperidinium 2-carb-oxy-benzoate-benzene-1,2-dicarb-oxy-lic acid (1/1).

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-05

3.  4-Carbamoylpiperidinium phenyl-acetate hemihydrate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20

4.  4-Carbamoylpiperidinium 5-nitro-salicylate.

Authors:  Graham Smith; Urs D Wermuth
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-15
  4 in total

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