Literature DB >> 21522573

Dichlorido{2-morpholino-N-[1-(2-pyrid-yl)ethyl-idene]ethanamine-κN,N',N''}zinc(II).

Nurul Azimah Ikmal Hisham1, Nura Suleiman Gwaram, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, [ZnCl(2)(C(13)H(19)N(3)O)], the Schiff base ligand acts as an N,N',N''-tridentate chelating agent, making two five-membered rings with the Zn(II) ion. The metal atom is five-coordinated by the Schiff base ligand and two Cl atoms in a distorted square-pyramidal geometry. An intra-molecular C-H⋯Cl inter-action occurs. In the crystal, adjacent mol-ecules are linked together via C-H⋯Cl hydrogen-bonding and long range C-H⋯O and C-H⋯Cl inter-actions into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21522573      PMCID: PMC3050202          DOI: 10.1107/S1600536810050671

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of an analogous CdII complex, see: Ikmal Hisham et al. (2010 ▶). For crystal structures of similar ZnII complexes, see: Chattopadhyay et al. (2009 ▶); Sun (2005 ▶).

Experimental

Crystal data

[ZnCl2(C13H19N3O)] M = 369.58 Monoclinic, a = 9.5737 (12) Å b = 13.7064 (17) Å c = 12.0766 (15) Å β = 106.643 (2)° V = 1518.3 (3) Å3 Z = 4 Mo Kα radiation μ = 1.97 mm−1 T = 100 K 0.35 × 0.21 × 0.05 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.546, T max = 0.908 13693 measured reflections 2979 independent reflections 2552 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.091 S = 1.08 2979 reflections 182 parameters H-atom parameters constrained Δρmax = 1.03 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810050671/pv2366sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810050671/pv2366Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C13H19N3O)]F(000) = 760
Mr = 369.58Dx = 1.617 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3471 reflections
a = 9.5737 (12) Åθ = 2.3–27.5°
b = 13.7064 (17) ŵ = 1.97 mm1
c = 12.0766 (15) ÅT = 100 K
β = 106.643 (2)°Plate, yellow
V = 1518.3 (3) Å30.35 × 0.21 × 0.05 mm
Z = 4
Bruker APEXII CCD diffractometer2979 independent reflections
Radiation source: fine-focus sealed tube2552 reflections with I > 2σ(I)
graphiteRint = 0.047
φ and ω scansθmax = 26.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.546, Tmax = 0.908k = −16→16
13693 measured reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0515P)2 + 0.4492P] where P = (Fo2 + 2Fc2)/3
2979 reflections(Δ/σ)max = 0.001
182 parametersΔρmax = 1.03 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn10.72733 (3)0.08854 (2)0.16005 (3)0.01368 (12)
Cl10.95230 (7)0.13655 (5)0.26836 (6)0.01677 (16)
Cl20.54542 (7)0.19943 (5)0.13205 (6)0.01828 (17)
O10.6851 (2)0.06197 (15)0.51473 (16)0.0224 (4)
N10.7630 (2)0.11923 (16)−0.01195 (19)0.0156 (5)
N20.7468 (2)−0.04614 (15)0.08710 (18)0.0145 (5)
N30.6560 (2)−0.01499 (15)0.28543 (18)0.0146 (5)
C10.7536 (3)0.20493 (19)−0.0655 (2)0.0183 (6)
H10.72190.2601−0.03170.022*
C20.7881 (3)0.2169 (2)−0.1689 (2)0.0208 (6)
H20.77880.2788−0.20570.025*
C30.8363 (3)0.1366 (2)−0.2170 (2)0.0191 (6)
H30.86330.1430−0.28650.023*
C40.8449 (3)0.0468 (2)−0.1625 (2)0.0172 (6)
H40.8764−0.0095−0.19460.021*
C50.8064 (3)0.04073 (18)−0.0604 (2)0.0147 (6)
C60.7974 (3)−0.05297 (19)0.0006 (2)0.0148 (6)
C70.8414 (3)−0.14742 (19)−0.0420 (2)0.0178 (6)
H7A0.8954−0.18700.02400.027*
H7B0.9034−0.1342−0.09220.027*
H7C0.7541−0.1829−0.08560.027*
C80.7172 (3)−0.13162 (19)0.1493 (2)0.0186 (6)
H8A0.8078−0.15420.20640.022*
H8B0.6782−0.18560.09470.022*
C90.6064 (3)−0.10075 (19)0.2097 (2)0.0184 (6)
H9A0.5134−0.08470.15110.022*
H9B0.5879−0.15580.25670.022*
C100.5308 (3)0.0196 (2)0.3241 (2)0.0181 (6)
H10A0.4885−0.03600.35570.022*
H10B0.45460.04590.25700.022*
C110.5765 (3)0.0979 (2)0.4155 (2)0.0217 (6)
H11A0.61570.15460.38330.026*
H11B0.49050.12000.43860.026*
C120.8104 (3)0.0335 (2)0.4810 (2)0.0208 (6)
H12A0.88650.00920.54950.025*
H12B0.85010.09100.45070.025*
C130.7736 (3)−0.0452 (2)0.3896 (2)0.0197 (6)
H13A0.8621−0.06160.36660.024*
H13B0.7425−0.10460.42260.024*
U11U22U33U12U13U23
Zn10.01259 (19)0.01472 (18)0.01459 (18)−0.00019 (11)0.00529 (13)−0.00150 (11)
Cl10.0128 (3)0.0199 (3)0.0179 (3)−0.0021 (2)0.0048 (3)−0.0023 (2)
Cl20.0152 (3)0.0206 (3)0.0194 (3)0.0037 (3)0.0056 (3)0.0007 (2)
O10.0203 (11)0.0347 (11)0.0144 (10)0.0023 (9)0.0085 (9)0.0005 (8)
N10.0126 (12)0.0185 (11)0.0154 (11)−0.0004 (9)0.0037 (9)0.0002 (9)
N20.0138 (12)0.0159 (11)0.0133 (11)−0.0016 (9)0.0030 (9)−0.0005 (9)
N30.0142 (12)0.0156 (11)0.0145 (11)−0.0015 (9)0.0051 (9)−0.0004 (9)
C10.0172 (14)0.0179 (13)0.0186 (14)−0.0009 (11)0.0033 (12)−0.0023 (10)
C20.0228 (16)0.0228 (14)0.0146 (13)−0.0042 (12)0.0019 (12)0.0021 (10)
C30.0148 (14)0.0292 (15)0.0135 (13)−0.0032 (12)0.0044 (11)−0.0010 (11)
C40.0108 (14)0.0222 (14)0.0186 (14)−0.0002 (11)0.0044 (11)−0.0034 (11)
C50.0119 (13)0.0168 (13)0.0137 (13)−0.0013 (10)0.0010 (11)−0.0018 (10)
C60.0099 (13)0.0187 (13)0.0139 (13)−0.0015 (10)0.0005 (11)−0.0010 (10)
C70.0171 (14)0.0179 (13)0.0201 (14)−0.0003 (11)0.0081 (12)−0.0026 (10)
C80.0248 (16)0.0147 (13)0.0174 (14)−0.0013 (11)0.0077 (12)0.0003 (10)
C90.0171 (15)0.0190 (13)0.0203 (14)−0.0056 (11)0.0070 (12)−0.0013 (11)
C100.0110 (14)0.0257 (15)0.0190 (14)−0.0028 (11)0.0065 (11)0.0018 (11)
C110.0212 (16)0.0268 (15)0.0196 (15)0.0055 (12)0.0099 (13)0.0007 (11)
C120.0113 (14)0.0355 (16)0.0149 (13)−0.0003 (12)0.0028 (11)0.0017 (12)
C130.0166 (15)0.0231 (14)0.0194 (14)0.0026 (11)0.0052 (12)0.0039 (11)
Zn1—N22.077 (2)C4—H40.9500
Zn1—N12.239 (2)C5—C61.495 (4)
Zn1—Cl22.2628 (7)C6—C71.497 (4)
Zn1—Cl12.2736 (7)C7—H7A0.9800
Zn1—N32.316 (2)C7—H7B0.9800
O1—C121.427 (3)C7—H7C0.9800
O1—C111.430 (3)C8—C91.510 (4)
N1—C11.331 (3)C8—H8A0.9900
N1—C51.346 (3)C8—H8B0.9900
N2—C61.274 (3)C9—H9A0.9900
N2—C81.463 (3)C9—H9B0.9900
N3—C91.482 (3)C10—C111.511 (4)
N3—C101.484 (3)C10—H10A0.9900
N3—C131.487 (3)C10—H10B0.9900
C1—C21.390 (4)C11—H11A0.9900
C1—H10.9500C11—H11B0.9900
C2—C31.384 (4)C12—C131.511 (4)
C2—H20.9500C12—H12A0.9900
C3—C41.387 (4)C12—H12B0.9900
C3—H30.9500C13—H13A0.9900
C4—C51.387 (4)C13—H13B0.9900
N2—Zn1—N173.58 (8)C6—C7—H7B109.5
N2—Zn1—Cl2133.83 (6)H7A—C7—H7B109.5
N1—Zn1—Cl292.90 (6)C6—C7—H7C109.5
N2—Zn1—Cl1108.41 (6)H7A—C7—H7C109.5
N1—Zn1—Cl196.22 (6)H7B—C7—H7C109.5
Cl2—Zn1—Cl1116.95 (3)N2—C8—C9106.9 (2)
N2—Zn1—N379.16 (8)N2—C8—H8A110.4
N1—Zn1—N3150.85 (8)C9—C8—H8A110.4
Cl2—Zn1—N398.68 (6)N2—C8—H8B110.4
Cl1—Zn1—N3102.08 (6)C9—C8—H8B110.4
C12—O1—C11108.9 (2)H8A—C8—H8B108.6
C1—N1—C5118.7 (2)N3—C9—C8112.0 (2)
C1—N1—Zn1127.53 (19)N3—C9—H9A109.2
C5—N1—Zn1113.63 (17)C8—C9—H9A109.2
C6—N2—C8122.5 (2)N3—C9—H9B109.2
C6—N2—Zn1120.96 (18)C8—C9—H9B109.2
C8—N2—Zn1116.09 (17)H9A—C9—H9B107.9
C9—N3—C10107.6 (2)N3—C10—C11111.5 (2)
C9—N3—C13109.5 (2)N3—C10—H10A109.3
C10—N3—C13107.9 (2)C11—C10—H10A109.3
C9—N3—Zn1100.66 (15)N3—C10—H10B109.3
C10—N3—Zn1115.21 (16)C11—C10—H10B109.3
C13—N3—Zn1115.49 (16)H10A—C10—H10B108.0
N1—C1—C2122.7 (3)O1—C11—C10110.9 (2)
N1—C1—H1118.7O1—C11—H11A109.5
C2—C1—H1118.7C10—C11—H11A109.5
C3—C2—C1118.5 (3)O1—C11—H11B109.5
C3—C2—H2120.8C10—C11—H11B109.5
C1—C2—H2120.8H11A—C11—H11B108.1
C2—C3—C4119.2 (3)O1—C12—C13111.4 (2)
C2—C3—H3120.4O1—C12—H12A109.4
C4—C3—H3120.4C13—C12—H12A109.4
C3—C4—C5118.7 (3)O1—C12—H12B109.4
C3—C4—H4120.6C13—C12—H12B109.4
C5—C4—H4120.6H12A—C12—H12B108.0
N1—C5—C4122.1 (2)N3—C13—C12112.4 (2)
N1—C5—C6113.8 (2)N3—C13—H13A109.1
C4—C5—C6123.9 (2)C12—C13—H13A109.1
N2—C6—C5115.5 (2)N3—C13—H13B109.1
N2—C6—C7123.8 (2)C12—C13—H13B109.1
C5—C6—C7120.8 (2)H13A—C13—H13B107.9
C6—C7—H7A109.5
D—H···AD—HH···AD···AD—H···A
C4—H4···Cl1i0.952.713.625 (3)161
C7—H7C···Cl2ii0.982.773.619 (3)146
C12—H12B···Cl10.992.733.526 (3)138
C10—H10A···O1iii0.992.613.408 (3)137
C9—H9B···Cl1iv0.992.883.665 (3)137
C7—H7B···Cl1i0.982.853.807 (3)166
C8—H8A···Cl2iv0.992.873.750 (3)149
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C4—H4⋯Cl1i0.952.713.625 (3)161
C7—H7C⋯Cl2ii0.982.773.619 (3)146
C12—H12B⋯Cl10.992.733.526 (3)138
C10—H10A⋯O1iii0.992.613.408 (3)137
C9—H9B⋯Cl1iv0.992.883.665 (3)137
C7—H7B⋯Cl1i0.982.853.807 (3)166
C8—H8A⋯Cl2iv0.992.873.750 (3)149

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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