Literature DB >> 21754337

Diiodido{2-(morpholin-4-yl)-N-[1-(2-pyrid-yl)ethyl-idene]ethanamine-κN,N',N''}zinc.

Nura Suleiman Gwaram1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the title compound, [ZnI(2)(C(13)H(19)N(3)O)], the Zn(II) ion is five-coordinated in a distorted square-pyramidal geometry, in which the basal plane is defined by three N atoms from the Schiff base ligand and one iodide ion. A second iodide ligand, situated in the apical position, completes the coordination geometry. In the crystal structure, C-H⋯O hydrogen bonds link a pair of mol-ecules around an inversion centre into a dimer.

Entities:  

Year:  2011        PMID: 21754337      PMCID: PMC3089331          DOI: 10.1107/S1600536811014656

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of an analogous ZnCl2 complex, see: Ikmal Hisham et al. (2011 ▶). For square-pyramidal ZnI2 complexes with N,N′,N′′-tridentate ligands, see: Drew & Hollis (1978 ▶); Yousefi (2010 ▶). For a description of the geometry of complexes with five-coordinated metal ions, see: Addison et al. (1984 ▶).

Experimental

Crystal data

[ZnI2(C13H19N3O)] M = 552.48 Triclinic, a = 8.8874 (3) Å b = 10.3117 (4) Å c = 10.3643 (4) Å α = 68.8810 (18)° β = 81.959 (2)° γ = 66.3990 (17)° V = 811.91 (6) Å3 Z = 2 Mo Kα radiation μ = 5.31 mm−1 T = 100 K 0.17 × 0.13 × 0.09 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.465, T max = 0.646 7292 measured reflections 3517 independent reflections 3260 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.018 wR(F 2) = 0.045 S = 1.05 3517 reflections 182 parameters H-atom parameters constrained Δρmax = 0.85 e Å−3 Δρmin = −1.23 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811014656/hy2422sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811014656/hy2422Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnI2(C13H19N3O)]Z = 2
Mr = 552.48F(000) = 524
Triclinic, P1Dx = 2.260 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8874 (3) ÅCell parameters from 6030 reflections
b = 10.3117 (4) Åθ = 2.3–30.4°
c = 10.3643 (4) ŵ = 5.31 mm1
α = 68.8810 (18)°T = 100 K
β = 81.959 (2)°Block, brown
γ = 66.3990 (17)°0.17 × 0.13 × 0.09 mm
V = 811.91 (6) Å3
Bruker APEXII CCD diffractometer3517 independent reflections
Radiation source: fine-focus sealed tube3260 reflections with I > 2σ(I)
graphiteRint = 0.013
φ and ω scansθmax = 27.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −11→11
Tmin = 0.465, Tmax = 0.646k = −13→13
7292 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.018Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.045H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0197P)2 + 1.3278P] where P = (Fo2 + 2Fc2)/3
3517 reflections(Δ/σ)max = 0.002
182 parametersΔρmax = 0.85 e Å3
0 restraintsΔρmin = −1.23 e Å3
xyzUiso*/Ueq
Zn10.77476 (4)0.81170 (3)0.66161 (3)0.01267 (7)
I10.64389 (2)1.103488 (18)0.584395 (17)0.01508 (5)
I21.05998 (2)0.694938 (19)0.791314 (17)0.01566 (5)
O10.3717 (2)0.8562 (2)1.0506 (2)0.0212 (4)
N10.8699 (3)0.8016 (2)0.4558 (2)0.0135 (4)
N20.7235 (3)0.6403 (2)0.6380 (2)0.0137 (4)
N30.6122 (3)0.7619 (2)0.8469 (2)0.0137 (4)
C10.9527 (3)0.8810 (3)0.3702 (3)0.0161 (5)
H10.96970.95370.39590.019*
C21.0153 (3)0.8615 (3)0.2446 (3)0.0181 (5)
H21.07670.91760.18680.022*
C30.9859 (3)0.7587 (3)0.2062 (3)0.0190 (6)
H31.02390.74550.11970.023*
C40.9002 (3)0.6744 (3)0.2951 (3)0.0165 (5)
H40.87970.60240.27090.020*
C50.8456 (3)0.6981 (3)0.4199 (3)0.0145 (5)
C60.7574 (3)0.6108 (3)0.5253 (3)0.0139 (5)
C70.7137 (3)0.5006 (3)0.4920 (3)0.0181 (5)
H7A0.67320.44120.57540.027*
H7B0.81120.43360.45820.027*
H7C0.62800.55470.42040.027*
C80.6366 (3)0.5663 (3)0.7513 (3)0.0161 (5)
H8A0.68370.45660.76930.019*
H8B0.51890.60520.72750.019*
C90.6557 (3)0.5993 (3)0.8785 (3)0.0150 (5)
H9A0.58390.56430.95310.018*
H9B0.77070.54350.91190.018*
C100.4339 (3)0.8512 (3)0.8159 (3)0.0157 (5)
H10A0.40080.82540.74400.019*
H10B0.41520.95940.77820.019*
C110.3273 (3)0.8231 (3)0.9429 (3)0.0177 (5)
H11A0.21070.88640.91740.021*
H11B0.33910.71660.97660.021*
C120.5400 (3)0.7684 (3)1.0885 (3)0.0188 (6)
H12A0.55610.66081.12760.023*
H12B0.56900.79601.16100.023*
C130.6531 (3)0.7918 (3)0.9652 (3)0.0168 (5)
H13A0.64660.89670.93380.020*
H13B0.76760.72470.99500.020*
U11U22U33U12U13U23
Zn10.01377 (14)0.01207 (14)0.01168 (14)−0.00432 (11)0.00086 (11)−0.00440 (11)
I10.01607 (9)0.01218 (8)0.01448 (9)−0.00349 (6)0.00078 (6)−0.00401 (6)
I20.01406 (9)0.01676 (9)0.01511 (9)−0.00421 (7)−0.00121 (6)−0.00553 (7)
O10.0184 (10)0.0264 (11)0.0200 (10)−0.0062 (8)0.0039 (8)−0.0130 (9)
N10.0131 (10)0.0134 (10)0.0120 (10)−0.0034 (8)0.0003 (8)−0.0039 (8)
N20.0130 (10)0.0110 (10)0.0147 (11)−0.0028 (8)−0.0011 (8)−0.0033 (8)
N30.0150 (11)0.0130 (10)0.0116 (10)−0.0047 (9)0.0001 (8)−0.0032 (8)
C10.0148 (12)0.0163 (12)0.0164 (13)−0.0051 (10)−0.0007 (10)−0.0051 (10)
C20.0142 (12)0.0194 (13)0.0178 (13)−0.0053 (11)0.0010 (10)−0.0047 (11)
C30.0171 (13)0.0214 (14)0.0138 (13)−0.0024 (11)0.0017 (10)−0.0067 (11)
C40.0153 (13)0.0178 (13)0.0160 (13)−0.0034 (10)−0.0007 (10)−0.0084 (11)
C50.0108 (12)0.0140 (12)0.0160 (13)−0.0014 (10)−0.0011 (9)−0.0053 (10)
C60.0116 (12)0.0123 (12)0.0159 (13)−0.0012 (10)−0.0012 (9)−0.0057 (10)
C70.0187 (13)0.0189 (13)0.0185 (14)−0.0070 (11)0.0010 (10)−0.0085 (11)
C80.0176 (13)0.0155 (12)0.0165 (13)−0.0077 (10)0.0038 (10)−0.0064 (10)
C90.0167 (13)0.0123 (12)0.0135 (13)−0.0048 (10)0.0009 (10)−0.0028 (10)
C100.0145 (12)0.0169 (12)0.0148 (13)−0.0042 (10)0.0003 (10)−0.0061 (10)
C110.0151 (13)0.0192 (13)0.0186 (14)−0.0055 (11)0.0020 (10)−0.0079 (11)
C120.0183 (13)0.0256 (14)0.0123 (13)−0.0071 (11)0.0008 (10)−0.0076 (11)
C130.0181 (13)0.0197 (13)0.0124 (13)−0.0064 (11)0.0018 (10)−0.0067 (10)
Zn1—N12.205 (2)C4—H40.9500
Zn1—N22.093 (2)C5—C61.495 (4)
Zn1—N32.269 (2)C6—C71.495 (4)
Zn1—I12.6018 (4)C7—H7A0.9800
Zn1—I22.6506 (4)C7—H7B0.9800
O1—C111.423 (3)C7—H7C0.9800
O1—C121.426 (3)C8—C91.521 (4)
N1—C11.332 (3)C8—H8A0.9900
N1—C51.349 (3)C8—H8B0.9900
N2—C61.277 (3)C9—H9A0.9900
N2—C81.459 (3)C9—H9B0.9900
N3—C91.479 (3)C10—C111.521 (4)
N3—C131.490 (3)C10—H10A0.9900
N3—C101.491 (3)C10—H10B0.9900
C1—C21.394 (4)C11—H11A0.9900
C1—H10.9500C11—H11B0.9900
C2—C31.380 (4)C12—C131.521 (4)
C2—H20.9500C12—H12A0.9900
C3—C41.394 (4)C12—H12B0.9900
C3—H30.9500C13—H13A0.9900
C4—C51.387 (4)C13—H13B0.9900
N2—Zn1—N174.71 (8)C6—C7—H7B109.5
N2—Zn1—N378.31 (8)H7A—C7—H7B109.5
N1—Zn1—N3151.54 (8)C6—C7—H7C109.5
N2—Zn1—I1137.01 (6)H7A—C7—H7C109.5
N1—Zn1—I195.53 (6)H7B—C7—H7C109.5
N3—Zn1—I198.03 (6)N2—C8—C9107.5 (2)
N2—Zn1—I2109.52 (6)N2—C8—H8A110.2
N1—Zn1—I298.21 (6)C9—C8—H8A110.2
N3—Zn1—I299.18 (6)N2—C8—H8B110.2
I1—Zn1—I2113.325 (12)C9—C8—H8B110.2
C11—O1—C12110.8 (2)H8A—C8—H8B108.5
C1—N1—C5118.9 (2)N3—C9—C8111.1 (2)
C1—N1—Zn1126.70 (18)N3—C9—H9A109.4
C5—N1—Zn1114.34 (17)C8—C9—H9A109.4
C6—N2—C8122.6 (2)N3—C9—H9B109.4
C6—N2—Zn1120.65 (18)C8—C9—H9B109.4
C8—N2—Zn1116.61 (16)H9A—C9—H9B108.0
C9—N3—C13111.1 (2)N3—C10—C11112.5 (2)
C9—N3—C10112.5 (2)N3—C10—H10A109.1
C13—N3—C10107.4 (2)C11—C10—H10A109.1
C9—N3—Zn1100.98 (15)N3—C10—H10B109.1
C13—N3—Zn1111.80 (16)C11—C10—H10B109.1
C10—N3—Zn1113.10 (15)H10A—C10—H10B107.8
N1—C1—C2122.6 (3)O1—C11—C10111.4 (2)
N1—C1—H1118.7O1—C11—H11A109.3
C2—C1—H1118.7C10—C11—H11A109.3
C3—C2—C1118.3 (3)O1—C11—H11B109.3
C3—C2—H2120.8C10—C11—H11B109.3
C1—C2—H2120.8H11A—C11—H11B108.0
C2—C3—C4119.6 (3)O1—C12—C13111.7 (2)
C2—C3—H3120.2O1—C12—H12A109.3
C4—C3—H3120.2C13—C12—H12A109.3
C5—C4—C3118.4 (3)O1—C12—H12B109.3
C5—C4—H4120.8C13—C12—H12B109.3
C3—C4—H4120.8H12A—C12—H12B107.9
N1—C5—C4122.1 (2)N3—C13—C12113.3 (2)
N1—C5—C6114.8 (2)N3—C13—H13A108.9
C4—C5—C6123.1 (2)C12—C13—H13A108.9
N2—C6—C5115.4 (2)N3—C13—H13B108.9
N2—C6—C7125.4 (2)C12—C13—H13B108.9
C5—C6—C7119.2 (2)H13A—C13—H13B107.7
C6—C7—H7A109.5
D—H···AD—HH···AD···AD—H···A
C13—H13A···O1i0.992.553.491 (3)159
Table 1

Selected bond lengths (Å)

Zn1—N12.205 (2)
Zn1—N22.093 (2)
Zn1—N32.269 (2)
Zn1—I12.6018 (4)
Zn1—I22.6506 (4)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C13—H13A⋯O1i0.992.553.491 (3)159

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Dichlorido{2-morpholino-N-[1-(2-pyrid-yl)ethyl-idene]ethanamine-κN,N',N''}zinc(II).

Authors:  Nurul Azimah Ikmal Hisham; Nura Suleiman Gwaram; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-11

3.  Diiodido(2,3,5,6-tetrapyridin-2-yl-pyrazine-κN,N,N)zinc(II).

Authors:  Mohammad Yousefi
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-20
  3 in total

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