Literature DB >> 21522518

Dibromidobis(1-ethyl-2,6-dimethyl-pyridinium-4-olate-κO)zinc(II).

M Thenmozhi, A Philominal, S Dhanuskodi, M N Ponnuswamy.   

Abstract

In the bioactive title compound, [ZnBr(2)(C(9)H(13)NO)(2)], the Zn(II) atom is coordinated in a distorted tetra-hedral arrangement by two Br(-) anions and the O atoms of two zwitterionic organic ligands. The pyridinium rings are almost planar [maximum deviations = 0.004 (4) and 0.003 (4) Å]. The ethyl groups are approximately perpendicular to the corresponding pyridinium ring planes [N-C-C-C = 88.8 (4)° in each ligand]. The packing of the mol-ecules is controlled by π-π inter-actions, with centroid-centroid distances of 3.625 (3) and 3.711 (2) Å, forming chains approximately parallel to (102). The crystal studied was non-merohedrally twinned (twin relationship between the domains 1 0 0, 0 1 0, -0.4672 -0.1864 -1 and batch scale factor of 7.39%).

Entities:  

Year:  2010        PMID: 21522518      PMCID: PMC3050368          DOI: 10.1107/S1600536810052190

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to pyridinium compounds and their applications, see: Darensbourg et al. (2003 ▶); Dhanuskodi et al. (2006 ▶); Glavcheva et al. (2004 ▶); Lakshmanaperumal et al. (2002 ▶, 2004 ▶); Usman et al. (2000 ▶, 2001 ▶); Mootz & Wusson (1981 ▶). For their biological activity, see: Akkurt et al. (2005 ▶). For related structures, see: Thenmozhi et al. (2010 ▶); Mootz & Wusson (1981 ▶); Sundar et al. (2004 ▶). For the preparation of the ligand, see: Garratt (1963 ▶).

Experimental

Crystal data

[ZnBr2(C9H13NO)2] M = 527.60 Triclinic, a = 8.462 (1) Å b = 8.518 (1) Å c = 14.418 (3) Å α = 93.131 (6)° β = 97.871 (7)° γ = 90.210 (8)° V = 1027.9 (2) Å3 Z = 2 Mo Kα radiation μ = 5.10 mm−1 T = 293 K 0.12 × 0.11 × 0.11 mm

Data collection

Bruker Kappa APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.580, T max = 0.604 16553 measured reflections 16553 independent reflections 13614 reflections with I > 2σ(I)

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.189 S = 1.06 16553 reflections 233 parameters H-atom parameters constrained Δρmax = 1.20 e Å−3 Δρmin = −0.95 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810052190/sj5050sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810052190/sj5050Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnBr2(C9H13NO)2]Z = 2
Mr = 527.60F(000) = 528
Triclinic, P1Dx = 1.705 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.462 (1) ÅCell parameters from 16553 reflections
b = 8.518 (1) Åθ = 1.4–25.0°
c = 14.418 (3) ŵ = 5.10 mm1
α = 93.131 (6)°T = 293 K
β = 97.871 (7)°Block, colourless
γ = 90.210 (8)°0.12 × 0.11 × 0.11 mm
V = 1027.9 (2) Å3
Bruker Kappa APEXII area-detector diffractometer16553 independent reflections
Radiation source: fine-focus sealed tube13614 reflections with I > 2σ(I)
graphiteRint = 0.000
ω and φ scansθmax = 25.0°, θmin = 1.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −10→10
Tmin = 0.580, Tmax = 0.604k = −10→10
16553 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.189H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0512P)2 + 13.5867P] where P = (Fo2 + 2Fc2)/3
16553 reflections(Δ/σ)max < 0.001
233 parametersΔρmax = 1.20 e Å3
0 restraintsΔρmin = −0.95 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C21.2061 (5)0.5686 (6)0.1164 (3)0.0379 (11)
C31.1571 (5)0.4291 (5)0.1424 (3)0.0369 (11)
H31.23210.35030.15360.044*
C40.9992 (5)0.3972 (5)0.1532 (3)0.0350 (10)
C50.8909 (5)0.5207 (5)0.1318 (3)0.0372 (11)
H50.78300.50520.13510.045*
C60.9418 (5)0.6608 (6)0.1066 (3)0.0383 (11)
C71.1564 (7)0.8459 (6)0.0842 (4)0.0565 (15)
H7A1.07510.89900.04370.068*
H7B1.25070.83710.05300.068*
C81.1965 (8)0.9428 (7)0.1766 (5)0.080 (2)
H8A1.10460.94760.20890.120*
H8B1.22761.04730.16420.120*
H8C1.28280.89460.21490.120*
C91.3764 (6)0.5978 (6)0.1057 (4)0.0535 (14)
H9A1.44000.51180.12930.080*
H9B1.41320.69350.14040.080*
H9C1.38580.60690.04060.080*
C100.8236 (6)0.7901 (7)0.0860 (4)0.0620 (16)
H10A0.71860.75290.09220.093*
H10B0.82560.82120.02310.093*
H10C0.85130.87860.12930.093*
C120.4359 (5)0.6653 (5)0.3969 (3)0.0337 (10)
C130.5639 (5)0.6198 (5)0.3569 (3)0.0360 (10)
H130.63830.69540.34690.043*
C140.5894 (5)0.4615 (5)0.3295 (3)0.0339 (10)
C150.4688 (5)0.3538 (5)0.3449 (3)0.0331 (10)
H150.47880.24810.32730.040*
C160.3392 (5)0.4008 (5)0.3848 (3)0.0317 (9)
C170.1813 (5)0.6083 (6)0.4556 (3)0.0429 (11)
H17A0.21080.69700.49970.051*
H17B0.14470.52370.49000.051*
C180.0477 (6)0.6553 (7)0.3824 (4)0.0587 (15)
H18A0.09110.71100.33530.088*
H18B−0.02480.72190.41140.088*
H18C−0.00810.56280.35380.088*
C190.4154 (6)0.8323 (6)0.4274 (4)0.0537 (14)
H19A0.41160.84050.49380.080*
H19B0.31780.87070.39500.080*
H19C0.50360.89370.41330.080*
C200.2141 (6)0.2841 (6)0.3993 (4)0.0513 (13)
H20A0.23760.18350.37140.077*
H20B0.11180.31820.37060.077*
H20C0.21240.27550.46530.077*
O10.9580 (4)0.2656 (4)0.1836 (3)0.0475 (9)
O20.7136 (4)0.4211 (4)0.2935 (2)0.0429 (8)
Zn10.75971 (6)0.21641 (6)0.23222 (4)0.03594 (15)
Br10.81438 (7)0.03353 (6)0.34965 (4)0.05785 (18)
Br20.55242 (6)0.15373 (7)0.10973 (4)0.05343 (17)
N11.0984 (4)0.6872 (4)0.1000 (2)0.0371 (9)
N110.3231 (4)0.5561 (4)0.4125 (2)0.0315 (8)
U11U22U33U12U13U23
C20.029 (2)0.051 (3)0.035 (2)0.007 (2)0.0074 (19)0.008 (2)
C30.034 (2)0.044 (3)0.035 (2)0.010 (2)0.0085 (19)0.011 (2)
C40.030 (2)0.035 (3)0.042 (3)−0.0005 (19)0.0070 (19)0.006 (2)
C50.026 (2)0.047 (3)0.038 (3)0.005 (2)0.0040 (19)0.002 (2)
C60.034 (2)0.042 (3)0.039 (3)0.014 (2)0.003 (2)0.008 (2)
C70.060 (3)0.044 (3)0.073 (4)0.011 (3)0.026 (3)0.029 (3)
C80.087 (5)0.050 (4)0.112 (6)−0.017 (3)0.045 (4)0.004 (4)
C90.039 (3)0.055 (3)0.072 (4)0.007 (2)0.023 (3)0.021 (3)
C100.044 (3)0.055 (4)0.091 (5)0.020 (3)0.013 (3)0.026 (3)
C120.039 (3)0.028 (2)0.034 (2)0.0002 (19)0.0043 (19)0.0002 (19)
C130.036 (2)0.029 (2)0.044 (3)−0.0046 (19)0.008 (2)0.000 (2)
C140.033 (2)0.033 (2)0.035 (2)−0.0012 (19)0.0053 (19)−0.0052 (19)
C150.041 (3)0.028 (2)0.029 (2)0.0029 (19)0.0046 (19)−0.0016 (18)
C160.032 (2)0.031 (2)0.030 (2)−0.0044 (18)−0.0020 (18)−0.0008 (18)
C170.038 (3)0.048 (3)0.044 (3)0.004 (2)0.013 (2)−0.004 (2)
C180.043 (3)0.077 (4)0.058 (3)0.014 (3)0.010 (3)0.006 (3)
C190.055 (3)0.031 (3)0.075 (4)−0.002 (2)0.017 (3)−0.009 (3)
C200.049 (3)0.038 (3)0.071 (4)−0.013 (2)0.023 (3)−0.001 (3)
O10.0378 (18)0.040 (2)0.070 (2)0.0061 (15)0.0231 (17)0.0082 (17)
O20.0421 (19)0.0312 (18)0.058 (2)0.0000 (14)0.0203 (16)−0.0084 (15)
Zn10.0333 (3)0.0302 (3)0.0456 (3)0.0014 (2)0.0118 (2)−0.0023 (2)
Br10.0676 (4)0.0476 (3)0.0622 (4)0.0091 (3)0.0173 (3)0.0164 (3)
Br20.0441 (3)0.0648 (4)0.0494 (3)−0.0022 (2)0.0027 (2)−0.0056 (3)
N10.041 (2)0.038 (2)0.034 (2)0.0061 (17)0.0099 (17)0.0120 (17)
N110.0326 (19)0.031 (2)0.0302 (19)−0.0020 (15)0.0055 (15)−0.0048 (15)
C2—C31.347 (6)C12—C191.484 (6)
C2—N11.371 (5)C13—C141.410 (6)
C2—C91.492 (6)C13—H130.9300
C3—C41.395 (6)C14—O21.275 (5)
C3—H30.9300C14—C151.418 (6)
C4—O11.289 (5)C15—C161.358 (6)
C4—C51.417 (6)C15—H150.9300
C5—C61.352 (6)C16—N111.374 (5)
C5—H50.9300C16—C201.493 (6)
C6—N11.360 (6)C17—N111.483 (5)
C6—C101.504 (6)C17—C181.508 (7)
C7—N11.476 (6)C17—H17A0.9700
C7—C81.525 (9)C17—H17B0.9700
C7—H7A0.9700C18—H18A0.9600
C7—H7B0.9700C18—H18B0.9600
C8—H8A0.9600C18—H18C0.9600
C8—H8B0.9600C19—H19A0.9600
C8—H8C0.9600C19—H19B0.9600
C9—H9A0.9600C19—H19C0.9600
C9—H9B0.9600C20—H20A0.9600
C9—H9C0.9600C20—H20B0.9600
C10—H10A0.9600C20—H20C0.9600
C10—H10B0.9600O1—Zn11.957 (3)
C10—H10C0.9600O2—Zn11.976 (3)
C12—C131.344 (6)Zn1—Br22.3501 (8)
C12—N111.379 (5)Zn1—Br12.3635 (8)
C3—C2—N1119.8 (4)O2—C14—C15123.5 (4)
C3—C2—C9121.2 (4)C13—C14—C15115.4 (4)
N1—C2—C9119.0 (4)C16—C15—C14121.9 (4)
C2—C3—C4123.0 (4)C16—C15—H15119.1
C2—C3—H3118.5C14—C15—H15119.1
C4—C3—H3118.5C15—C16—N11120.0 (4)
O1—C4—C3121.4 (4)C15—C16—C20120.3 (4)
O1—C4—C5123.3 (4)N11—C16—C20119.7 (4)
C3—C4—C5115.3 (4)N11—C17—C18111.4 (4)
C6—C5—C4121.1 (4)N11—C17—H17A109.3
C6—C5—H5119.4C18—C17—H17A109.3
C4—C5—H5119.4N11—C17—H17B109.3
C5—C6—N1121.1 (4)C18—C17—H17B109.3
C5—C6—C10119.5 (4)H17A—C17—H17B108.0
N1—C6—C10119.4 (4)C17—C18—H18A109.5
N1—C7—C8111.1 (4)C17—C18—H18B109.5
N1—C7—H7A109.4H18A—C18—H18B109.5
C8—C7—H7A109.4C17—C18—H18C109.5
N1—C7—H7B109.4H18A—C18—H18C109.5
C8—C7—H7B109.4H18B—C18—H18C109.5
H7A—C7—H7B108.0C12—C19—H19A109.5
C7—C8—H8A109.5C12—C19—H19B109.5
C7—C8—H8B109.5H19A—C19—H19B109.5
H8A—C8—H8B109.5C12—C19—H19C109.5
C7—C8—H8C109.5H19A—C19—H19C109.5
H8A—C8—H8C109.5H19B—C19—H19C109.5
H8B—C8—H8C109.5C16—C20—H20A109.5
C2—C9—H9A109.5C16—C20—H20B109.5
C2—C9—H9B109.5H20A—C20—H20B109.5
H9A—C9—H9B109.5C16—C20—H20C109.5
C2—C9—H9C109.5H20A—C20—H20C109.5
H9A—C9—H9C109.5H20B—C20—H20C109.5
H9B—C9—H9C109.5C4—O1—Zn1127.6 (3)
C6—C10—H10A109.5C14—O2—Zn1128.4 (3)
C6—C10—H10B109.5O1—Zn1—O2101.12 (13)
H10A—C10—H10B109.5O1—Zn1—Br2111.24 (11)
C6—C10—H10C109.5O2—Zn1—Br2108.65 (10)
H10A—C10—H10C109.5O1—Zn1—Br1108.88 (10)
H10B—C10—H10C109.5O2—Zn1—Br1108.20 (10)
C13—C12—N11120.3 (4)Br2—Zn1—Br1117.46 (3)
C13—C12—C19120.9 (4)C6—N1—C2119.7 (4)
N11—C12—C19118.8 (4)C6—N1—C7120.7 (4)
C12—C13—C14122.4 (4)C2—N1—C7119.4 (4)
C12—C13—H13118.8C16—N11—C12120.0 (3)
C14—C13—H13118.8C16—N11—C17120.3 (4)
O2—C14—C13121.1 (4)C12—N11—C17119.7 (4)
N1—C2—C3—C40.5 (7)C14—O2—Zn1—O1172.7 (4)
C9—C2—C3—C4179.9 (5)C14—O2—Zn1—Br255.6 (4)
C2—C3—C4—O1−175.8 (5)C14—O2—Zn1—Br1−72.9 (4)
C2—C3—C4—C52.1 (7)C5—C6—N1—C22.1 (7)
O1—C4—C5—C6175.2 (5)C10—C6—N1—C2−178.3 (5)
C3—C4—C5—C6−2.7 (7)C5—C6—N1—C7−172.2 (5)
C4—C5—C6—N10.7 (7)C10—C6—N1—C77.4 (7)
C4—C5—C6—C10−178.9 (5)C3—C2—N1—C6−2.6 (7)
N11—C12—C13—C14−0.2 (7)C9—C2—N1—C6177.9 (4)
C19—C12—C13—C14178.2 (5)C3—C2—N1—C7171.7 (5)
C12—C13—C14—O2−178.5 (4)C9—C2—N1—C7−7.7 (7)
C12—C13—C14—C151.5 (7)C8—C7—N1—C685.7 (6)
O2—C14—C15—C16179.0 (4)C8—C7—N1—C2−88.6 (5)
C13—C14—C15—C16−1.0 (6)C15—C16—N11—C122.2 (6)
C14—C15—C16—N11−0.8 (6)C20—C16—N11—C12−178.2 (4)
C14—C15—C16—C20179.6 (4)C15—C16—N11—C17179.7 (4)
C3—C4—O1—Zn1164.0 (3)C20—C16—N11—C17−0.8 (6)
C5—C4—O1—Zn1−13.8 (7)C13—C12—N11—C16−1.8 (6)
C13—C14—O2—Zn1−169.5 (3)C19—C12—N11—C16179.9 (4)
C15—C14—O2—Zn110.5 (6)C13—C12—N11—C17−179.2 (4)
C4—O1—Zn1—O2−33.4 (4)C19—C12—N11—C172.5 (6)
C4—O1—Zn1—Br281.8 (4)C18—C17—N11—C16−89.8 (5)
C4—O1—Zn1—Br1−147.2 (4)C18—C17—N11—C1287.6 (5)
D—H···AD—HH···AD···AD—H···A
C5—H5···O20.932.573.093 (5)116.
Table 1

Selected bond lengths (Å)

O1—Zn11.957 (3)
O2—Zn11.976 (3)
Zn1—Br22.3501 (8)
Zn1—Br12.3635 (8)
  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Synthesis, structural, thermal and optical studies of 1-ethyl-2,6-dimethyl-4-hydroxy pyridinium halides.

Authors:  S Dhanuskodi; S Manivannan; K Kirschbaum
Journal:  Spectrochim Acta A Mol Biomol Spectrosc       Date:  2005-12-27       Impact factor: 4.098

3.  1-[(4-Chlorobenzoyl)methyl]-4-(N,N-dimethylamino)pyridinium bromide sesquihydrate and 1-[(4-bromobenzoyl)methyl]-4-(N,N-dimethylamino)pyridinium bromide sesquihydrate.

Authors:  T V Sundar; V Parthasarathi; K Sarkunam; M Nallu; B Walfort; H Lang
Journal:  Acta Crystallogr C       Date:  2004-06-12       Impact factor: 1.172

4.  Carbon dioxide/epoxide coupling reactions utilizing Lewis base adducts of zinc halides as catalysts. Cyclic carbonate versus polycarbonate production.

Authors:  Donald J Darensbourg; Samuel J Lewis; Jody L Rodgers; Jason C Yarbrough
Journal:  Inorg Chem       Date:  2003-01-27       Impact factor: 5.165

5.  Dichloridobis(1-ethyl-2,6-dimethyl-pyridinium-4-olate-κO)zinc(II).

Authors:  M Thenmozhi; A Philominal; S Dhanuskodi; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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