Literature DB >> 21588868

Dichloridobis(1-ethyl-2,6-dimethyl-pyridinium-4-olate-κO)zinc(II).

M Thenmozhi, A Philominal, S Dhanuskodi, M N Ponnuswamy.   

Abstract

In the title compound, [ZnCl(2)(C(9)H(13)NO)(2)], the Zn(II) ion is coordinated by two Cl(-) anions and two O atoms of two zwitterionic organic ligands in a distorted tetra-hedral arrangement. In the crystal, mol-ecules are linked into sheets parallel to the bc plane by C-H⋯Cl and C-H⋯O hydrogen bonds and weak π-π inter-actions [centroid-centroid distance = 3.669 (1) Å].

Entities:  

Year:  2010        PMID: 21588868      PMCID: PMC3009362          DOI: 10.1107/S160053681004119X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to pyridinium compounds, see: Anwar et al. (1997 ▶, 1999 ▶); Damiano et al. (2007 ▶); Darensbourg et al. (2003 ▶); Mootz & Wusson (1981 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the preparation of 1-ethyl-2,6-dimethyl-4(1H)-pyridinone trihydrate, see: Garratt (1963 ▶).

Experimental

Crystal data

[ZnCl2(C9H13NO)2] M = 438.68 Monoclinic, a = 30.365 (2) Å b = 8.5366 (6) Å c = 15.7982 (12) Å β = 94.281 (4)° V = 4083.7 (5) Å3 Z = 8 Mo Kα radiation μ = 1.48 mm−1 T = 293 K 0.25 × 0.25 × 0.23 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS, Bruker, 2008 ▶) T min = 0.709, T max = 0.727 19140 measured reflections 5069 independent reflections 4248 reflections with I > 2σ(I) R int = 0.042

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.084 S = 0.99 5069 reflections 233 parameters H-atom parameters constrained Δρmax = 0.61 e Å−3 Δρmin = −0.56 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681004119X/ci5172sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681004119X/ci5172Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C9H13NO)2]F(000) = 1824
Mr = 438.68Dx = 1.427 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 5069 reflections
a = 30.365 (2) Åθ = 1.3–28.3°
b = 8.5366 (6) ŵ = 1.48 mm1
c = 15.7982 (12) ÅT = 293 K
β = 94.281 (4)°Block, yellow
V = 4083.7 (5) Å30.25 × 0.25 × 0.23 mm
Z = 8
Bruker SMART APEXII area-detector diffractometer5069 independent reflections
Radiation source: fine-focus sealed tube4248 reflections with I > 2σ(I)
graphiteRint = 0.042
ω and φ scansθmax = 28.3°, θmin = 1.3°
Absorption correction: multi-scan (SADABS, Bruker, 2008)h = −40→40
Tmin = 0.709, Tmax = 0.727k = −11→10
19140 measured reflectionsl = −21→20
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.084w = 1/[σ2(Fo2) + (0.0343P)2 + 3.3394P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max = 0.001
5069 reflectionsΔρmax = 0.61 e Å3
233 parametersΔρmin = −0.56 e Å3
0 restraintsExtinction correction: SHELXL97, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00082 (11)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C2−0.01906 (5)1.0155 (2)0.10794 (11)0.0359 (4)
C30.01997 (6)0.9693 (2)0.14837 (11)0.0374 (4)
H30.02550.86290.15580.045*
C40.05235 (5)1.0787 (2)0.17944 (11)0.0364 (4)
C50.04059 (5)1.2375 (2)0.16743 (12)0.0383 (4)
H50.06031.31450.18800.046*
C60.00144 (6)1.2821 (2)0.12668 (11)0.0377 (4)
C7−0.07005 (6)1.2200 (3)0.04757 (12)0.0466 (4)
H7A−0.07971.13750.00820.056*
H7B−0.06461.31310.01470.056*
C8−0.10658 (6)1.2540 (3)0.10526 (14)0.0568 (5)
H8A−0.11111.16390.13990.085*
H8B−0.13341.27770.07150.085*
H8C−0.09841.34190.14090.085*
C9−0.05273 (7)0.8962 (3)0.07675 (14)0.0507 (5)
H9A−0.08100.92410.09560.076*
H9B−0.04420.79490.09880.076*
H9C−0.05450.89310.01590.076*
C10−0.00998 (7)1.4522 (2)0.11818 (15)0.0554 (5)
H10A−0.03411.47550.15200.083*
H10B−0.01831.47590.05980.083*
H10C0.01521.51420.13740.083*
C120.26273 (6)0.9691 (2)0.45067 (12)0.0416 (4)
C130.21875 (6)0.9588 (2)0.42739 (12)0.0419 (4)
H130.19870.99300.46500.050*
C140.20270 (6)0.8981 (2)0.34832 (11)0.0391 (4)
C150.23516 (6)0.8424 (2)0.29655 (13)0.0459 (4)
H150.22630.79640.24470.055*
C160.27915 (6)0.8540 (2)0.32029 (13)0.0434 (4)
C170.34104 (6)0.9425 (2)0.41988 (14)0.0468 (4)
H17A0.34511.03630.45420.056*
H17B0.35610.95810.36860.056*
C180.36164 (8)0.8059 (3)0.46811 (18)0.0676 (7)
H18A0.34770.79250.52020.101*
H18B0.39260.82540.48050.101*
H18C0.35780.71270.43440.101*
C190.27833 (7)1.0377 (3)0.53495 (15)0.0652 (7)
H19A0.29341.13460.52640.098*
H19B0.29810.96570.56490.098*
H19C0.25341.05670.56760.098*
C200.31287 (8)0.7970 (4)0.26254 (16)0.0698 (7)
H20A0.29810.75090.21270.105*
H20B0.33150.72010.29160.105*
H20C0.33060.88360.24630.105*
Cl10.08868 (2)0.63005 (6)0.23807 (5)0.06526 (17)
Cl20.163428 (18)0.86170 (7)0.10513 (3)0.05362 (14)
N1−0.02813 (5)1.17136 (17)0.09508 (9)0.0364 (3)
N110.29302 (5)0.92018 (19)0.39652 (10)0.0401 (3)
O10.08947 (4)1.04133 (16)0.21754 (10)0.0509 (3)
O20.16095 (4)0.89431 (19)0.32761 (9)0.0514 (3)
Zn10.126091 (6)0.85132 (2)0.221676 (13)0.03522 (8)
U11U22U33U12U13U23
C20.0331 (8)0.0397 (9)0.0349 (9)−0.0027 (7)0.0028 (6)−0.0047 (7)
C30.0367 (8)0.0331 (8)0.0420 (10)0.0009 (7)0.0001 (7)−0.0038 (7)
C40.0311 (8)0.0414 (9)0.0365 (9)0.0019 (7)0.0006 (6)−0.0082 (7)
C50.0337 (8)0.0372 (9)0.0442 (10)−0.0028 (7)0.0040 (7)−0.0086 (7)
C60.0366 (8)0.0377 (9)0.0395 (9)0.0019 (7)0.0082 (7)−0.0019 (7)
C70.0382 (9)0.0612 (12)0.0391 (10)0.0070 (8)−0.0048 (7)0.0064 (9)
C80.0358 (10)0.0771 (15)0.0569 (13)0.0145 (10)−0.0002 (9)0.0079 (11)
C90.0406 (10)0.0522 (11)0.0583 (13)−0.0106 (8)−0.0028 (9)−0.0086 (10)
C100.0540 (12)0.0411 (11)0.0712 (15)0.0064 (9)0.0054 (10)0.0025 (10)
C120.0338 (8)0.0507 (10)0.0400 (10)−0.0015 (7)0.0008 (7)−0.0080 (8)
C130.0310 (8)0.0549 (11)0.0399 (10)0.0011 (7)0.0034 (7)−0.0087 (8)
C140.0317 (8)0.0471 (10)0.0380 (9)0.0013 (7)0.0003 (7)−0.0002 (8)
C150.0391 (9)0.0613 (12)0.0366 (10)0.0061 (8)−0.0023 (7)−0.0105 (8)
C160.0363 (9)0.0532 (11)0.0408 (10)0.0074 (7)0.0042 (7)−0.0036 (8)
C170.0316 (8)0.0511 (11)0.0574 (12)−0.0015 (8)0.0010 (8)0.0057 (9)
C180.0505 (13)0.0731 (15)0.0773 (17)0.0136 (11)−0.0076 (11)0.0157 (13)
C190.0414 (11)0.0977 (19)0.0556 (13)−0.0049 (11)−0.0026 (9)−0.0305 (13)
C200.0456 (12)0.106 (2)0.0580 (14)0.0179 (12)0.0083 (10)−0.0213 (14)
Cl10.0609 (3)0.0442 (3)0.0936 (5)−0.0149 (2)0.0257 (3)−0.0035 (3)
Cl20.0553 (3)0.0670 (3)0.0395 (3)−0.0098 (2)0.0095 (2)0.0006 (2)
N10.0302 (7)0.0440 (8)0.0349 (8)0.0032 (6)0.0014 (5)−0.0004 (6)
N110.0280 (7)0.0478 (9)0.0439 (8)0.0019 (6)−0.0009 (6)−0.0009 (7)
O10.0375 (7)0.0462 (7)0.0660 (9)0.0066 (6)−0.0154 (6)−0.0122 (7)
O20.0296 (6)0.0840 (10)0.0399 (7)0.0028 (6)−0.0032 (5)−0.0090 (7)
Zn10.02879 (11)0.03822 (13)0.03829 (13)−0.00233 (7)0.00007 (8)−0.00281 (8)
C2—C31.362 (2)C12—C191.498 (3)
C2—N11.371 (2)C13—C141.406 (3)
C2—C91.500 (2)C13—H130.93
C3—C41.416 (2)C14—O21.286 (2)
C3—H30.93C14—C151.409 (3)
C4—O11.278 (2)C15—C161.364 (3)
C4—C51.412 (3)C15—H150.93
C5—C61.363 (2)C16—N111.368 (2)
C5—H50.93C16—C201.502 (3)
C6—N11.372 (2)C17—N111.490 (2)
C6—C101.496 (3)C17—C181.503 (3)
C7—N11.488 (2)C17—H17A0.97
C7—C81.515 (3)C17—H17B0.97
C7—H7A0.97C18—H18A0.96
C7—H7B0.97C18—H18B0.96
C8—H8A0.96C18—H18C0.96
C8—H8B0.96C19—H19A0.96
C8—H8C0.96C19—H19B0.96
C9—H9A0.96C19—H19C0.96
C9—H9B0.96C20—H20A0.96
C9—H9C0.96C20—H20B0.96
C10—H10A0.96C20—H20C0.96
C10—H10B0.96Cl1—Zn12.2292 (5)
C10—H10C0.96Cl2—Zn12.2349 (6)
C12—C131.361 (2)O1—Zn11.9649 (13)
C12—N111.367 (2)O2—Zn11.9472 (13)
C3—C2—N1120.57 (15)O2—C14—C15124.24 (17)
C3—C2—C9120.36 (17)C13—C14—C15115.41 (16)
N1—C2—C9119.07 (16)C16—C15—C14121.93 (18)
C2—C3—C4121.94 (16)C16—C15—H15119.0
C2—C3—H3119.0C14—C15—H15119.0
C4—C3—H3119.0C15—C16—N11120.19 (17)
O1—C4—C5120.54 (16)C15—C16—C20120.50 (19)
O1—C4—C3124.33 (17)N11—C16—C20119.30 (17)
C5—C4—C3115.12 (15)N11—C17—C18112.90 (17)
C6—C5—C4122.31 (16)N11—C17—H17A109.0
C6—C5—H5118.8C18—C17—H17A109.0
C4—C5—H5118.8N11—C17—H17B109.0
C5—C6—N1120.23 (16)C18—C17—H17B109.0
C5—C6—C10120.08 (17)H17A—C17—H17B107.8
N1—C6—C10119.67 (16)C17—C18—H18A109.5
N1—C7—C8112.78 (16)C17—C18—H18B109.5
N1—C7—H7A109.0H18A—C18—H18B109.5
C8—C7—H7A109.0C17—C18—H18C109.5
N1—C7—H7B109.0H18A—C18—H18C109.5
C8—C7—H7B109.0H18B—C18—H18C109.5
H7A—C7—H7B107.8C12—C19—H19A109.5
C7—C8—H8A109.5C12—C19—H19B109.5
C7—C8—H8B109.5H19A—C19—H19B109.5
H8A—C8—H8B109.5C12—C19—H19C109.5
C7—C8—H8C109.5H19A—C19—H19C109.5
H8A—C8—H8C109.5H19B—C19—H19C109.5
H8B—C8—H8C109.5C16—C20—H20A109.5
C2—C9—H9A109.5C16—C20—H20B109.5
C2—C9—H9B109.5H20A—C20—H20B109.5
H9A—C9—H9B109.5C16—C20—H20C109.5
C2—C9—H9C109.5H20A—C20—H20C109.5
H9A—C9—H9C109.5H20B—C20—H20C109.5
H9B—C9—H9C109.5C2—N1—C6119.74 (14)
C6—C10—H10A109.5C2—N1—C7120.04 (15)
C6—C10—H10B109.5C6—N1—C7120.21 (15)
H10A—C10—H10B109.5C12—N11—C16119.99 (15)
C6—C10—H10C109.5C12—N11—C17119.84 (15)
H10A—C10—H10C109.5C16—N11—C17120.15 (16)
H10B—C10—H10C109.5C4—O1—Zn1134.31 (12)
C13—C12—N11120.20 (16)C14—O2—Zn1133.29 (12)
C13—C12—C19120.27 (17)O2—Zn1—O198.22 (6)
N11—C12—C19119.51 (16)O2—Zn1—Cl1107.99 (5)
C12—C13—C14122.15 (17)O1—Zn1—Cl1114.29 (5)
C12—C13—H13118.9O2—Zn1—Cl2115.09 (4)
C14—C13—H13118.9O1—Zn1—Cl2105.10 (5)
O2—C14—C13120.34 (16)Cl1—Zn1—Cl2115.06 (2)
N1—C2—C3—C40.7 (3)C10—C6—N1—C74.0 (2)
C9—C2—C3—C4−179.34 (17)C8—C7—N1—C293.7 (2)
C2—C3—C4—O1−179.80 (18)C8—C7—N1—C6−85.9 (2)
C2—C3—C4—C51.7 (3)C13—C12—N11—C16−3.0 (3)
O1—C4—C5—C6179.59 (18)C19—C12—N11—C16178.4 (2)
C3—C4—C5—C6−1.8 (3)C13—C12—N11—C17175.60 (18)
C4—C5—C6—N1−0.4 (3)C19—C12—N11—C17−3.0 (3)
C4—C5—C6—C10178.01 (17)C15—C16—N11—C122.7 (3)
N11—C12—C13—C140.2 (3)C20—C16—N11—C12−178.4 (2)
C19—C12—C13—C14178.8 (2)C15—C16—N11—C17−175.92 (18)
C12—C13—C14—O2−178.01 (19)C20—C16—N11—C173.0 (3)
C12—C13—C14—C152.7 (3)C18—C17—N11—C1290.0 (2)
O2—C14—C15—C16177.7 (2)C18—C17—N11—C16−91.4 (2)
C13—C14—C15—C16−3.0 (3)C5—C4—O1—Zn1−160.08 (14)
C14—C15—C16—N110.4 (3)C3—C4—O1—Zn121.5 (3)
C14—C15—C16—C20−178.5 (2)C13—C14—O2—Zn1169.24 (15)
C3—C2—N1—C6−3.1 (3)C15—C14—O2—Zn1−11.6 (3)
C9—C2—N1—C6176.98 (17)C14—O2—Zn1—O1−127.09 (19)
C3—C2—N1—C7177.37 (16)C14—O2—Zn1—Cl1113.97 (19)
C9—C2—N1—C7−2.6 (2)C14—O2—Zn1—Cl2−16.1 (2)
C5—C6—N1—C22.9 (3)C4—O1—Zn1—O2−159.12 (19)
C10—C6—N1—C2−175.51 (17)C4—O1—Zn1—Cl1−45.1 (2)
C5—C6—N1—C7−177.53 (17)C4—O1—Zn1—Cl282.02 (19)
D—H···AD—HH···AD···AD—H···A
C8—H8A···O1i0.962.533.344 (3)143
C10—H10A···Cl1ii0.962.823.740 (2)162
C10—H10C···Cl1iii0.962.823.745 (2)162
C13—H13···Cl2iv0.932.823.709 (2)161
Table 1

Selected bond lengths (Å)

Cl1—Zn12.2292 (5)
Cl2—Zn12.2349 (6)
O1—Zn11.9649 (13)
O2—Zn11.9472 (13)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C8—H8A⋯O1i0.962.533.344 (3)143
C10—H10A⋯Cl1ii0.962.823.740 (2)162
C10—H10C⋯Cl1iii0.962.823.745 (2)162
C13—H13⋯Cl2iv0.932.823.709 (2)161

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Journal:  Org Biomol Chem       Date:  2007-06-29       Impact factor: 3.876

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Carbon dioxide/epoxide coupling reactions utilizing Lewis base adducts of zinc halides as catalysts. Cyclic carbonate versus polycarbonate production.

Authors:  Donald J Darensbourg; Samuel J Lewis; Jody L Rodgers; Jason C Yarbrough
Journal:  Inorg Chem       Date:  2003-01-27       Impact factor: 5.165

4.  Structure validation in chemical crystallography.

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  4 in total
  1 in total

1.  Dibromidobis(1-ethyl-2,6-dimethyl-pyridinium-4-olate-κO)zinc(II).

Authors:  M Thenmozhi; A Philominal; S Dhanuskodi; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18
  1 in total

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