Literature DB >> 21522372

(1S,3R,8R,11S)-2,2-Dichloro-3,7,7,10-tetra-methyl-tricyclo-[6.4.0.0]dodec-9-en-11-ol.

Ahmed Benharref, Essêdiya Lassaba, Daniel Avignant, Abdelghani Oudahmane, Moha Berraho.   

Abstract

The title compound, C(16)H(24)Cl(2)O, was synthesized from β-himachalene (3,5,5,9-tetra-methyl-2,4a,5,6,7,8-hexa-hydro-1H-benzocyclo-heptene), which was isolated from essential oil of the Atlas cedar (Cedrus atlantica). The two fused rings exhibit different conformations: the six-membered ring has a screw-boat conformation, while the seven-membered ring displays a boat conformation. The dihedral angle between the two rings is 56.56 (18)°. In the crystal, mol-ecules aggregate into supra-molecular chains along the c axis mediated by O-H⋯O hydrogen bonds.

Entities:  

Year:  2011        PMID: 21522372      PMCID: PMC3052100          DOI: 10.1107/S1600536811004788

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the isolation of β-himachalene, see: Joseph & Dev (1968 ▶); Plattier & Teisseire (1974 ▶). For the reactivity of this sesquiterpene, see: Lassaba et al. (1998 ▶); Chekroun et al. (2000 ▶); El Jamili et al. (2002 ▶); Sbai et al. (2002 ▶); Dakir et al. (2004 ▶). For its biological activity, see: Daoubi et al. (2004 ▶). For conformational analysis, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C16H24Cl2O M = 303.25 Trigonal, a = 13.2323 (13) Å c = 7.9807 (8) Å V = 1210.2 (2) Å3 Z = 3 Mo Kα radiation μ = 0.39 mm−1 T = 298 K 0.41 × 0.33 × 0.26 mm

Data collection

Bruker APEXII CCD diffractometer 8123 measured reflections 3135 independent reflections 2995 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.126 S = 1.09 3135 reflections 180 parameters 1 restraint H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.33 e Å−3 Absolute structure: Flack (1983 ▶), 1940 Friedel pairs Flack parameter: −0.11 (7) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536811004788/tk2714sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004788/tk2714Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H24Cl2ODx = 1.244 Mg m3
Mr = 303.25Mo Kα radiation, λ = 0.71073 Å
Trigonal, P32Cell parameters from 8123 reflections
Hall symbol: P 32θ = 4–26.4°
a = 13.2323 (13) ŵ = 0.39 mm1
c = 7.9807 (8) ÅT = 298 K
V = 1210.2 (2) Å3Prism, colourless
Z = 30.41 × 0.33 × 0.26 mm
F(000) = 486
Bruker APEXII CCD diffractometer2995 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
graphiteθmax = 26.4°, θmin = 4.0°
ω and φ scansh = −15→16
8123 measured reflectionsk = −14→16
3135 independent reflectionsl = −9→9
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.126w = 1/[σ2(Fo2) + (0.0761P)2 + 0.4405P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
3135 reflectionsΔρmax = 0.52 e Å3
180 parametersΔρmin = −0.33 e Å3
1 restraintAbsolute structure: Flack & Bernardinelli (2000), 1940 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.11 (7)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
xyzUiso*/Ueq
C11.0043 (2)0.6432 (2)0.5388 (3)0.0304 (5)
C20.9057 (2)0.5880 (2)0.4113 (4)0.0370 (5)
C30.8790 (2)0.5564 (2)0.5938 (4)0.0392 (6)
C40.8143 (3)0.6069 (3)0.6915 (4)0.0464 (7)
H4A0.82280.67490.63290.056*
H4B0.73190.54930.69550.056*
C50.8600 (3)0.6411 (3)0.8682 (5)0.0541 (8)
H5A0.82340.57200.93840.065*
H5B0.83700.69530.91060.065*
C60.9973 (3)0.6991 (4)0.8854 (5)0.0591 (9)
H6A1.01780.72321.00100.071*
H6B1.01750.63940.86330.071*
C71.0733 (2)0.8032 (3)0.7746 (4)0.0426 (6)
C81.0545 (2)0.7728 (2)0.5810 (3)0.0308 (5)
H80.99660.79330.54260.041 (8)*
C91.1625 (2)0.8449 (2)0.4781 (4)0.0394 (6)
H91.18950.92460.47210.039 (8)*
C101.2228 (2)0.8058 (2)0.3951 (4)0.0367 (5)
C111.1869 (2)0.6778 (2)0.3958 (3)0.0333 (5)
H111.15230.64430.28670.029 (7)*
C121.0980 (2)0.6089 (2)0.5320 (4)0.0364 (5)
H12A1.06240.52600.50900.044*
H12B1.13710.62420.63960.044*
C131.3285 (3)0.8828 (3)0.2905 (5)0.0549 (8)
H13A1.34070.96070.28930.082*
H13B1.31640.85320.17800.082*
H13C1.39570.88370.33730.082*
C140.8465 (3)0.4338 (3)0.6503 (6)0.0633 (10)
H14A0.76530.39130.67960.095*
H14B0.89270.43860.74590.095*
H14C0.86110.39430.56080.095*
C151.0481 (4)0.9031 (4)0.8042 (6)0.0718 (11)
H15A0.97190.88110.76210.108*
H15B1.10550.97180.74690.108*
H15C1.05120.91880.92210.108*
C161.2019 (4)0.8507 (4)0.8255 (6)0.0730 (11)
H16A1.21220.87400.94100.109*
H16B1.25150.91680.75680.109*
H16C1.22190.79090.81020.109*
O11.28683 (18)0.6633 (2)0.4212 (3)0.0453 (5)
H11.32110.67270.33190.068*
Cl10.85533 (6)0.67322 (7)0.30875 (9)0.0497 (2)
Cl20.90015 (7)0.48357 (7)0.26866 (11)0.0605 (2)
U11U22U33U12U13U23
C10.0314 (11)0.0304 (11)0.0315 (12)0.0170 (10)0.0015 (9)0.0018 (9)
C20.0353 (12)0.0343 (12)0.0391 (14)0.0157 (10)−0.0032 (10)−0.0049 (10)
C30.0350 (13)0.0374 (13)0.0431 (15)0.0164 (11)0.0042 (11)0.0079 (11)
C40.0365 (14)0.0604 (18)0.0436 (16)0.0253 (13)0.0107 (11)0.0114 (13)
C50.0556 (19)0.069 (2)0.0418 (16)0.0344 (17)0.0144 (14)0.0117 (15)
C60.065 (2)0.079 (2)0.0401 (17)0.0407 (19)−0.0012 (14)0.0047 (16)
C70.0435 (14)0.0539 (16)0.0364 (14)0.0289 (13)−0.0053 (11)−0.0123 (12)
C80.0306 (11)0.0319 (12)0.0351 (12)0.0197 (10)0.0012 (9)−0.0015 (9)
C90.0409 (14)0.0287 (12)0.0461 (16)0.0155 (10)0.0048 (11)0.0006 (10)
C100.0320 (12)0.0339 (13)0.0409 (14)0.0141 (10)0.0025 (10)−0.0003 (10)
C110.0327 (12)0.0367 (12)0.0365 (14)0.0218 (10)−0.0017 (9)−0.0045 (10)
C120.0369 (12)0.0343 (12)0.0451 (14)0.0230 (11)0.0031 (10)0.0023 (10)
C130.0452 (16)0.0493 (17)0.064 (2)0.0190 (14)0.0200 (15)0.0072 (14)
C140.0562 (19)0.0404 (16)0.082 (3)0.0158 (15)0.0123 (17)0.0191 (16)
C150.078 (3)0.071 (2)0.078 (3)0.046 (2)0.002 (2)−0.023 (2)
C160.058 (2)0.087 (3)0.069 (3)0.033 (2)−0.0150 (19)−0.023 (2)
O10.0410 (10)0.0614 (13)0.0479 (12)0.0365 (10)0.0009 (8)−0.0025 (9)
Cl10.0471 (4)0.0680 (5)0.0384 (3)0.0321 (4)−0.0065 (3)0.0047 (3)
Cl20.0541 (4)0.0536 (4)0.0643 (5)0.0199 (4)−0.0071 (4)−0.0266 (4)
C1—C121.521 (3)C9—C101.326 (4)
C1—C21.522 (3)C9—H90.9300
C1—C31.534 (3)C10—C131.506 (4)
C1—C81.535 (3)C10—C111.513 (4)
C2—C31.507 (4)C11—O11.442 (3)
C2—Cl21.764 (3)C11—C121.524 (4)
C2—Cl11.771 (3)C11—H110.9800
C3—C141.524 (4)C12—H12A0.9700
C3—C41.535 (4)C12—H12B0.9700
C4—C51.512 (5)C13—H13A0.9600
C4—H4A0.9700C13—H13B0.9600
C4—H4B0.9700C13—H13C0.9600
C5—C61.584 (5)C14—H14A0.9600
C5—H5A0.9700C14—H14B0.9600
C5—H5B0.9700C14—H14C0.9600
C6—C71.518 (5)C15—H15A0.9600
C6—H6A0.9700C15—H15B0.9600
C6—H6B0.9700C15—H15C0.9600
C7—C151.534 (5)C16—H16A0.9600
C7—C161.545 (5)C16—H16B0.9600
C7—C81.585 (4)C16—H16C0.9600
C8—C91.505 (3)O1—H10.8200
C8—H80.9800
C12—C1—C2117.7 (2)C1—C8—H8106.2
C12—C1—C3121.6 (2)C7—C8—H8106.2
C2—C1—C359.08 (17)C10—C9—C8126.2 (2)
C12—C1—C8112.3 (2)C10—C9—H9116.9
C2—C1—C8118.1 (2)C8—C9—H9116.9
C3—C1—C8118.4 (2)C9—C10—C13123.3 (3)
C3—C2—C160.86 (17)C9—C10—C11121.5 (2)
C3—C2—Cl2119.6 (2)C13—C10—C11115.2 (2)
C1—C2—Cl2119.77 (19)O1—C11—C10110.7 (2)
C3—C2—Cl1120.9 (2)O1—C11—C12107.7 (2)
C1—C2—Cl1120.59 (18)C10—C11—C12112.9 (2)
Cl2—C2—Cl1108.61 (15)O1—C11—H11108.5
C2—C3—C14118.9 (3)C10—C11—H11108.5
C2—C3—C160.06 (16)C12—C11—H11108.5
C14—C3—C1120.3 (3)C1—C12—C11110.3 (2)
C2—C3—C4118.3 (2)C1—C12—H12A109.6
C14—C3—C4113.0 (3)C11—C12—H12A109.6
C1—C3—C4116.7 (2)C1—C12—H12B109.6
C5—C4—C3112.2 (3)C11—C12—H12B109.6
C5—C4—H4A109.2H12A—C12—H12B108.1
C3—C4—H4A109.2C10—C13—H13A109.5
C5—C4—H4B109.2C10—C13—H13B109.5
C3—C4—H4B109.2H13A—C13—H13B109.5
H4A—C4—H4B107.9C10—C13—H13C109.5
C4—C5—C6114.6 (3)H13A—C13—H13C109.5
C4—C5—H5A108.6H13B—C13—H13C109.5
C6—C5—H5A108.6C3—C14—H14A109.5
C4—C5—H5B108.6C3—C14—H14B109.5
C6—C5—H5B108.6H14A—C14—H14B109.5
H5A—C5—H5B107.6C3—C14—H14C109.5
C7—C6—C5118.0 (3)H14A—C14—H14C109.5
C7—C6—H6A107.8H14B—C14—H14C109.5
C5—C6—H6A107.8C7—C15—H15A109.5
C7—C6—H6B107.8C7—C15—H15B109.5
C5—C6—H6B107.8H15A—C15—H15B109.5
H6A—C6—H6B107.2C7—C15—H15C109.5
C6—C7—C15111.2 (3)H15A—C15—H15C109.5
C6—C7—C16108.2 (3)H15B—C15—H15C109.5
C15—C7—C16106.2 (3)C7—C16—H16A109.5
C6—C7—C8112.8 (2)C7—C16—H16B109.5
C15—C7—C8107.1 (3)H16A—C16—H16B109.5
C16—C7—C8111.1 (3)C7—C16—H16C109.5
C9—C8—C1109.4 (2)H16A—C16—H16C109.5
C9—C8—C7113.1 (2)H16B—C16—H16C109.5
C1—C8—C7115.0 (2)C11—O1—H1109.5
C9—C8—H8106.2
D—H···AD—HH···AD···AD—H···A
O1—H1···O1i0.822.102.853 (4)153
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O1i0.822.102.853 (4)153

Symmetry code: (i) .

  4 in total

1.  Regio- and stereoselectivity of beta-himachalene epoxidation by m-CPBA. A theoretical study.

Authors:  A Chekroun; A Jarid; A Benharref; A Boutalib
Journal:  J Org Chem       Date:  2000-07-14       Impact factor: 4.354

2.  Screening study for potential lead compounds for natural product-based fungicides: I. Synthesis and in vitro evaluation of coumarins against Botrytis cinerea.

Authors:  Mourad Daoubi; Rosa Durán-Patrón; Mohamed Hmamouchi; Rosario Hernández-Galán; Ahmed Benharref; Isidro G Collado
Journal:  Pest Manag Sci       Date:  2004-09       Impact factor: 4.845

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  (1S,3R,8S,9S,10R)-2,2-Dichloro-9,10-epoxy-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecane and (1S,3R,8S,10R)-2,2-dichloro-3,7,7,10-tetramethyltricyclo[6.4.0.0(1,3)]dodecan-9-one.

Authors:  F Sbai; M Dakir; A Auhmani; H El Jamili; M Akssira; A Benharref; A Kenz; M Pierrot
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

  4 in total

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