Literature DB >> 21522370

1-n-Decyl-5-nitro-1H-benzimidazol-2(3H)-one.

Younes Ouzidan, Y Kandri Rodi, Sonia Ladeira, El Mokhtar Essassi, Seik Weng Ng.   

Abstract

The benzimidazolone part of the title mol-ecule, C(17)H(25)N(3)O(3), is almost planar (r.m.s. deviation = 0.016 Å) and its mean plane is aligned at 7.9 (4) ° with respect to the mean plane of the nitro substituent. In the crystal, two mol-ecules are disposed about a center of inversion, generating a N-H⋯O hydrogen-bonded cyclic dimer with a R(2) (2)(8) graph-set motif.

Entities:  

Year:  2011        PMID: 21522370      PMCID: PMC3052083          DOI: 10.1107/S1600536811004399

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structure of 1-isopropenyl-1H-benzimidazol-2(3H)-one, see: Saber et al. (2010 ▶) and for 5-nitro-1-n-octyl-1H-benzimidazol-2(3H)-one, see: Ouzidan et al. (2011 ▶). For graph-set notation, see: Etter (1990 ▶).

Experimental

Crystal data

C17H25N3O3 M = 319.40 Triclinic, a = 5.4933 (2) Å b = 10.3063 (4) Å c = 16.1655 (6) Å α = 106.504 (2)° β = 98.545 (2)° γ = 96.809 (2)° V = 855.21 (6) Å3 Z = 2 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.32 × 0.06 × 0.04 mm

Data collection

Bruker APEXII diffractometer 10701 measured reflections 2971 independent reflections 1600 reflections with I > 2σ(I) R int = 0.068

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.175 S = 0.89 2971 reflections 209 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.31 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536811004399/zs2093sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536811004399/zs2093Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H25N3O3Z = 2
Mr = 319.40F(000) = 344
Triclinic, P1Dx = 1.240 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 5.4933 (2) ÅCell parameters from 1521 reflections
b = 10.3063 (4) Åθ = 2.7–27.3°
c = 16.1655 (6) ŵ = 0.09 mm1
α = 106.504 (2)°T = 293 K
β = 98.545 (2)°Prism, colorless
γ = 96.809 (2)°0.32 × 0.06 × 0.04 mm
V = 855.21 (6) Å3
Bruker APEXII diffractometer1600 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.068
graphiteθmax = 25.0°, θmin = 3.9°
φ and ω scansh = −6→6
10701 measured reflectionsk = −10→12
2971 independent reflectionsl = −19→19
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.055H-atom parameters constrained
wR(F2) = 0.175w = 1/[σ2(Fo2) + (0.1056P)2] where P = (Fo2 + 2Fc2)/3
S = 0.89(Δ/σ)max = 0.001
2971 reflectionsΔρmax = 0.30 e Å3
209 parametersΔρmin = −0.31 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.034 (6)
xyzUiso*/Ueq
O10.6868 (3)0.57512 (19)0.61197 (12)0.0413 (6)
O20.8896 (4)−0.0690 (2)0.29737 (16)0.0579 (7)
O31.2510 (4)−0.0845 (2)0.36526 (16)0.0680 (7)
N10.7157 (4)0.3830 (2)0.49844 (15)0.0357 (6)
H10.58630.38320.45920.043*
N20.9999 (4)0.4426 (2)0.61946 (15)0.0337 (6)
N31.0691 (5)−0.0264 (2)0.35868 (19)0.0482 (7)
C10.7879 (5)0.4765 (3)0.57918 (19)0.0354 (7)
C20.8734 (5)0.2871 (3)0.48616 (18)0.0328 (7)
C30.8717 (5)0.1718 (3)0.41760 (19)0.0371 (7)
H30.74830.14350.36710.044*
C41.0672 (5)0.1002 (3)0.4288 (2)0.0380 (7)
C51.2516 (5)0.1396 (3)0.5022 (2)0.0397 (8)
H51.38010.08900.50520.048*
C61.2493 (5)0.2538 (3)0.5717 (2)0.0385 (7)
H61.37230.28050.62230.046*
C71.0566 (5)0.3268 (3)0.56298 (19)0.0347 (7)
C81.1434 (5)0.5230 (3)0.70567 (18)0.0399 (7)
H8A1.07860.60780.72540.048*
H8B1.31570.54690.70070.048*
C91.1361 (5)0.4479 (3)0.77434 (19)0.0420 (7)
H9A1.19540.36180.75300.050*
H9B1.25190.50270.82760.050*
C100.8830 (5)0.4174 (3)0.7976 (2)0.0457 (8)
H10A0.76780.35750.74570.055*
H10B0.81850.50230.81710.055*
C110.8982 (5)0.3489 (3)0.8699 (2)0.0463 (8)
H11A0.95930.26320.84910.056*
H11B1.02020.40760.92040.056*
C120.6562 (6)0.3190 (3)0.8998 (2)0.0516 (9)
H12A0.58960.40360.91790.062*
H12B0.53660.25560.85050.062*
C130.6824 (6)0.2585 (3)0.9749 (2)0.0492 (8)
H13A0.80600.32101.02340.059*
H13B0.74570.17310.95610.059*
C140.4445 (6)0.2305 (3)1.0082 (2)0.0535 (9)
H14A0.37540.31461.02350.064*
H14B0.32440.16340.96080.064*
C150.4751 (6)0.1780 (3)1.0874 (2)0.0531 (9)
H15A0.54000.09261.07170.064*
H15B0.59810.24391.13440.064*
C160.2378 (7)0.1537 (4)1.1214 (2)0.0692 (11)
H16A0.11890.08251.07600.083*
H16B0.16590.23711.13310.083*
C170.2764 (8)0.1116 (4)1.2043 (3)0.0862 (13)
H17A0.11890.09651.22200.129*
H17B0.38880.18321.25030.129*
H17C0.34600.02861.19320.129*
U11U22U33U12U13U23
O10.0513 (12)0.0398 (11)0.0402 (12)0.0189 (10)0.0180 (10)0.0148 (10)
O20.0723 (16)0.0459 (14)0.0531 (16)0.0082 (12)0.0178 (14)0.0095 (12)
O30.0794 (17)0.0556 (14)0.0770 (18)0.0342 (13)0.0326 (14)0.0149 (13)
N10.0405 (13)0.0385 (13)0.0363 (15)0.0144 (11)0.0142 (11)0.0176 (13)
N20.0368 (13)0.0354 (13)0.0344 (14)0.0097 (10)0.0119 (11)0.0151 (12)
N30.0618 (18)0.0381 (15)0.056 (2)0.0155 (14)0.0303 (16)0.0194 (14)
C10.0446 (17)0.0345 (16)0.0357 (18)0.0080 (14)0.0186 (14)0.0179 (15)
C20.0383 (16)0.0332 (16)0.0355 (18)0.0072 (13)0.0170 (14)0.0184 (14)
C30.0440 (17)0.0374 (16)0.0355 (18)0.0054 (13)0.0146 (14)0.0172 (15)
C40.0491 (18)0.0321 (16)0.0444 (19)0.0096 (14)0.0273 (16)0.0192 (15)
C50.0412 (17)0.0383 (17)0.051 (2)0.0139 (14)0.0212 (16)0.0215 (16)
C60.0371 (16)0.0431 (17)0.0436 (19)0.0086 (13)0.0137 (14)0.0226 (16)
C70.0415 (16)0.0346 (16)0.0376 (18)0.0073 (13)0.0212 (14)0.0191 (14)
C80.0435 (16)0.0414 (17)0.0352 (18)0.0068 (13)0.0102 (14)0.0114 (15)
C90.0466 (17)0.0414 (17)0.0382 (18)0.0102 (14)0.0075 (14)0.0119 (14)
C100.0541 (19)0.0456 (18)0.044 (2)0.0130 (15)0.0156 (16)0.0185 (16)
C110.0561 (19)0.0483 (18)0.0399 (19)0.0123 (15)0.0140 (15)0.0183 (16)
C120.064 (2)0.0493 (19)0.050 (2)0.0120 (16)0.0166 (17)0.0237 (17)
C130.059 (2)0.0508 (19)0.043 (2)0.0115 (16)0.0125 (16)0.0199 (16)
C140.060 (2)0.056 (2)0.054 (2)0.0110 (16)0.0165 (17)0.0275 (18)
C150.070 (2)0.0456 (18)0.046 (2)0.0063 (16)0.0131 (18)0.0188 (17)
C160.086 (3)0.071 (2)0.068 (3)0.017 (2)0.036 (2)0.037 (2)
C170.136 (4)0.076 (3)0.063 (3)0.012 (3)0.041 (3)0.038 (2)
O1—C11.240 (3)C10—C111.525 (4)
O2—N31.228 (3)C10—H10A0.9700
O3—N31.231 (3)C10—H10B0.9700
N1—C11.353 (3)C11—C121.508 (4)
N1—C21.382 (3)C11—H11A0.9700
N1—H10.8800C11—H11B0.9700
N2—C11.379 (3)C12—C131.511 (4)
N2—C71.382 (3)C12—H12A0.9700
N2—C81.454 (4)C12—H12B0.9700
N3—C41.468 (4)C13—C141.513 (4)
C2—C31.374 (4)C13—H13A0.9700
C2—C71.402 (4)C13—H13B0.9700
C3—C41.391 (4)C14—C151.520 (4)
C3—H30.9300C14—H14A0.9700
C4—C51.367 (4)C14—H14B0.9700
C5—C61.380 (4)C15—C161.509 (4)
C5—H50.9300C15—H15A0.9700
C6—C71.382 (3)C15—H15B0.9700
C6—H60.9300C16—C171.517 (5)
C8—C91.526 (4)C16—H16A0.9700
C8—H8A0.9700C16—H16B0.9700
C8—H8B0.9700C17—H17A0.9600
C9—C101.514 (4)C17—H17B0.9600
C9—H9A0.9700C17—H17C0.9600
C9—H9B0.9700
C1—N1—C2110.5 (2)C9—C10—H10B109.3
C1—N1—H1124.7C11—C10—H10B109.3
C2—N1—H1124.7H10A—C10—H10B108.0
C1—N2—C7109.0 (2)C12—C11—C10115.4 (2)
C1—N2—C8124.0 (2)C12—C11—H11A108.4
C7—N2—C8126.9 (2)C10—C11—H11A108.4
O2—N3—O3123.7 (3)C12—C11—H11B108.4
O2—N3—C4118.5 (2)C10—C11—H11B108.4
O3—N3—C4117.8 (3)H11A—C11—H11B107.5
O1—C1—N1127.5 (3)C13—C12—C11113.7 (2)
O1—C1—N2125.5 (3)C13—C12—H12A108.8
N1—C1—N2107.0 (2)C11—C12—H12A108.8
C3—C2—N1132.1 (3)C13—C12—H12B108.8
C3—C2—C7121.8 (2)C11—C12—H12B108.8
N1—C2—C7106.1 (2)H12A—C12—H12B107.7
C2—C3—C4115.5 (3)C12—C13—C14115.2 (2)
C2—C3—H3122.3C12—C13—H13A108.5
C4—C3—H3122.3C14—C13—H13A108.5
C5—C4—C3123.6 (3)C12—C13—H13B108.5
C5—C4—N3118.8 (3)C14—C13—H13B108.5
C3—C4—N3117.6 (3)H13A—C13—H13B107.5
C4—C5—C6120.7 (2)C15—C14—C13115.0 (3)
C4—C5—H5119.6C15—C14—H14A108.5
C6—C5—H5119.6C13—C14—H14A108.5
C7—C6—C5117.2 (3)C15—C14—H14B108.5
C7—C6—H6121.4C13—C14—H14B108.5
C5—C6—H6121.4H14A—C14—H14B107.5
N2—C7—C6131.5 (3)C16—C15—C14114.5 (3)
N2—C7—C2107.3 (2)C16—C15—H15A108.6
C6—C7—C2121.2 (3)C14—C15—H15A108.6
N2—C8—C9113.2 (2)C16—C15—H15B108.6
N2—C8—H8A108.9C14—C15—H15B108.6
C9—C8—H8A108.9H15A—C15—H15B107.6
N2—C8—H8B108.9C15—C16—C17113.5 (3)
C9—C8—H8B108.9C15—C16—H16A108.9
H8A—C8—H8B107.8C17—C16—H16A108.9
C10—C9—C8115.7 (2)C15—C16—H16B108.9
C10—C9—H9A108.4C17—C16—H16B108.9
C8—C9—H9A108.4H16A—C16—H16B107.7
C10—C9—H9B108.4C16—C17—H17A109.5
C8—C9—H9B108.4C16—C17—H17B109.5
H9A—C9—H9B107.4H17A—C17—H17B109.5
C9—C10—C11111.6 (2)C16—C17—H17C109.5
C9—C10—H10A109.3H17A—C17—H17C109.5
C11—C10—H10A109.3H17B—C17—H17C109.5
C2—N1—C1—O1−179.0 (2)C8—N2—C7—C62.5 (4)
C2—N1—C1—N21.4 (3)C1—N2—C7—C2−0.7 (3)
C7—N2—C1—O1180.0 (2)C8—N2—C7—C2−177.4 (2)
C8—N2—C1—O1−3.2 (4)C5—C6—C7—N2179.3 (3)
C7—N2—C1—N1−0.4 (3)C5—C6—C7—C2−0.8 (4)
C8—N2—C1—N1176.4 (2)C3—C2—C7—N2−177.8 (2)
C1—N1—C2—C3177.4 (3)N1—C2—C7—N21.4 (3)
C1—N1—C2—C7−1.7 (3)C3—C2—C7—C62.3 (4)
N1—C2—C3—C4179.3 (2)N1—C2—C7—C6−178.4 (2)
C7—C2—C3—C4−1.7 (4)C1—N2—C8—C9114.0 (3)
C2—C3—C4—C5−0.3 (4)C7—N2—C8—C9−69.7 (3)
C2—C3—C4—N3178.0 (2)N2—C8—C9—C10−65.3 (3)
O2—N3—C4—C5172.5 (2)C8—C9—C10—C11−177.1 (2)
O3—N3—C4—C5−7.0 (4)C9—C10—C11—C12177.9 (3)
O2—N3—C4—C3−5.8 (4)C10—C11—C12—C13−176.8 (3)
O3—N3—C4—C3174.7 (2)C11—C12—C13—C14178.5 (3)
C3—C4—C5—C61.8 (4)C12—C13—C14—C15−176.4 (3)
N3—C4—C5—C6−176.5 (2)C13—C14—C15—C16178.6 (3)
C4—C5—C6—C7−1.2 (4)C14—C15—C16—C17−175.7 (3)
C1—N2—C7—C6179.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.881.922.784 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.881.922.784 (3)168

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Isopropenyl-1H-1,3-benzimidazol-2(3H)-one.

Authors:  Asmaa Saber; Hafid Zouihri; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-05-22

3.  5-Nitro-1-n-octyl-1H-benzimidazol-2(3H)-one.

Authors:  Younes Ouzidan; Y Kandri Rodi; Natalie Saffon; El Mokhtar Essassi; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-02-05
  3 in total

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