Literature DB >> 21515778

Complete genome sequence of Bacillus amyloliquefaciens TA208, a strain for industrial production of guanosine and ribavirin.

Guoqiang Zhang1, Aihua Deng, Qingyang Xu, Yong Liang, Ning Chen, Tingyi Wen.   

Abstract

Here, we report the complete genome sequence of Bacillus amyloliquefaciens TA208, a strain for industrial production of guanosine and synthesis of ribavirin by assimilation of formamide. Comparison of its genome sequence with those of strains DSM7 and FZB42 revealed horizontal gene transfer represented by unique prophages and restriction-modification systems and indicated significant accumulation of guanosine.

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Year:  2011        PMID： 21515778      PMCID： PMC3133192          DOI： 10.1128/JB.00440-11

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  15 in total

1.  Improved microbial gene identification with GLIMMER.

Authors:  A L Delcher; D Harmon; S Kasif; O White; S L Salzberg
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

2.  Prophage Finder: a prophage loci prediction tool for prokaryotic genome sequences.

Authors:  M Bose; Robert D Barber
Journal:  In Silico Biol       Date:  2006

Review 3.  Application of 'next-generation' sequencing technologies to microbial genetics.

Authors:  Daniel MacLean; Jonathan D G Jones; David J Studholme
Journal:  Nat Rev Microbiol       Date:  2009-04       Impact factor: 60.633

4.  De novo assembly of human genomes with massively parallel short read sequencing.

Authors:  Ruiqiang Li; Hongmei Zhu; Jue Ruan; Wubin Qian; Xiaodong Fang; Zhongbin Shi; Yingrui Li; Shengting Li; Gao Shan; Karsten Kristiansen; Songgang Li; Huanming Yang; Jian Wang; Jun Wang
Journal:  Genome Res       Date:  2009-12-17       Impact factor: 9.043

5.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

6.  A small gene, designated comS, located within the coding region of the fourth amino acid-activation domain of srfA, is required for competence development in Bacillus subtilis.

Authors:  L W Hamoen; H Eshuis; J Jongbloed; G Venema; D van Sinderen
Journal:  Mol Microbiol       Date:  1995-01       Impact factor: 3.501

7.  Genome sequence of B. amyloliquefaciens type strain DSM7(T) reveals differences to plant-associated B. amyloliquefaciens FZB42.

Authors:  Christian Rückert; Jochen Blom; Xiaohua Chen; Oleg Reva; Rainer Borriss
Journal:  J Biotechnol       Date:  2011-01-22       Impact factor: 3.307

8.  Enhancing electro-transformation competency of recalcitrant Bacillus amyloliquefaciens by combining cell-wall weakening and cell-membrane fluidity disturbing.

Authors:  Guo-qiang Zhang; Peng Bao; Yun Zhang; Ai-hua Deng; Ning Chen; Ting-yi Wen
Journal:  Anal Biochem       Date:  2010-10-14       Impact factor: 3.365

9.  Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42.

Authors:  Xiao Hua Chen; Alexandra Koumoutsi; Romy Scholz; Andreas Eisenreich; Kathrin Schneider; Isabelle Heinemeyer; Burkhard Morgenstern; Björn Voss; Wolfgang R Hess; Oleg Reva; Helmut Junge; Birgit Voigt; Peter R Jungblut; Joachim Vater; Roderich Süssmuth; Heiko Liesegang; Axel Strittmatter; Gerhard Gottschalk; Rainer Borriss
Journal:  Nat Biotechnol       Date:  2007-08-19       Impact factor: 54.908

10.  Rfam: annotating non-coding RNAs in complete genomes.

Authors:  Sam Griffiths-Jones; Simon Moxon; Mhairi Marshall; Ajay Khanna; Sean R Eddy; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971
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  8 in total

1.  The complete genome of Bacillus amyloliquefaciens subsp. plantarum CAU B946 contains a gene cluster for nonribosomal synthesis of iturin A.

Authors:  Jochen Blom; Christian Rueckert; Ben Niu; Qi Wang; Rainer Borriss
Journal:  J Bacteriol       Date:  2012-04       Impact factor: 3.490

2.  Complete genome sequence of Paenibacillus mucilaginosus 3016, a bacterium functional as microbial fertilizer.

Authors:  Mingchao Ma; Zhenya Wang; Li Li; Xin Jiang; Dawei Guan; Fengming Cao; Huijun Chen; Xuan Wang; Delong Shen; Binghai Du; Jun Li
Journal:  J Bacteriol       Date:  2012-05       Impact factor: 3.490

3.  The genome of plant growth-promoting Bacillus amyloliquefaciens subsp. plantarum strain YAU B9601-Y2 contains a gene cluster for mersacidin synthesis.

Authors:  Kun Hao; Pengfei He; Jochen Blom; Christian Rueckert; Zichao Mao; Yixin Wu; Yueqiu He; Rainer Borriss
Journal:  J Bacteriol       Date:  2012-06       Impact factor: 3.490

4.  Genomic insights into biocontrol potential of edible seaweed-associated Bacillus velezensis MTCC 10456 from Gulf of Mannar.

Authors:  Uttara Vairagkar; Padmaja Nipanikar-Gokhale; Yasmin Mirza
Journal:  Arch Microbiol       Date:  2021-03-26       Impact factor: 2.552

5.  A mimicking-of-DNA-methylation-patterns pipeline for overcoming the restriction barrier of bacteria.

Authors:  Guoqiang Zhang; Wenzhao Wang; Aihua Deng; Zhaopeng Sun; Yun Zhang; Yong Liang; Yongsheng Che; Tingyi Wen
Journal:  PLoS Genet       Date:  2012-09-27       Impact factor: 5.917

6.  Mutagenetic study of a novel inosine monophosphate dehydrogenase from Bacillus amyloliquefaciens and its possible application in guanosine production.

Authors:  Jian Wang; Kuifu He; Qingyang Xu; Ning Chen
Journal:  Biotechnol Biotechnol Equip       Date:  2014-01-02       Impact factor: 1.632

7.  Comparative Genomic Analysis of Bacillus amyloliquefaciens and Bacillus subtilis Reveals Evolutional Traits for Adaptation to Plant-Associated Habitats.

Authors:  Nan Zhang; Dongqing Yang; Joshua R A Kendall; Rainer Borriss; Irina S Druzhinina; Christian P Kubicek; Qirong Shen; Ruifu Zhang
Journal:  Front Microbiol       Date:  2016-12-20       Impact factor: 5.640

8.  Biocontrol Using Bacillus amyloliquefaciens PP19 Against Litchi Downy Blight Caused by Peronophythora litchii.

Authors:  Li Zheng; Shilian Huang; Tom Hsiang; Guohui Yu; Dongliang Guo; Zide Jiang; Jianguang Li
Journal:  Front Microbiol       Date:  2021-01-12       Impact factor: 5.640
  8 in total

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