Literature DB >> 28163321

Limb development: a paradigm of gene regulation.

Florence Petit1,2, Karen E Sears3, Nadav Ahituv1,4.   

Abstract

The limb is a commonly used model system for developmental biology. Given the need for precise control of complex signalling pathways to achieve proper patterning, the limb is also becoming a model system for gene regulation studies. Recent developments in genomic technologies have enabled the genome-wide identification of regulatory elements that control limb development, yielding insights into the determination of limb morphology and forelimb versus hindlimb identity. The modulation of regulatory interactions - for example, through the modification of regulatory sequences or chromatin architecture - can lead to morphological evolution, acquired regeneration capacity or limb malformations in diverse species, including humans.

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Year:  2017        PMID: 28163321     DOI: 10.1038/nrg.2016.167

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  143 in total

1.  Split-hand/split-foot malformation is caused by mutations in the p63 gene on 3q27.

Authors:  P Ianakiev; M W Kilpatrick; I Toudjarska; D Basel; P Beighton; P Tsipouras
Journal:  Am J Hum Genet       Date:  2000-06-05       Impact factor: 11.025

2.  Developmental origins of precocial forelimbs in marsupial neonates.

Authors:  Anna L Keyte; Kathleen K Smith
Journal:  Development       Date:  2010-12       Impact factor: 6.868

3.  Regulatory divergence modifies limb length between mammals.

Authors:  Chris J Cretekos; Ying Wang; Eric D Green; James F Martin; John J Rasweiler; Richard R Behringer
Journal:  Genes Dev       Date:  2008-01-15       Impact factor: 11.361

4.  Appendage expression driven by the Hoxd Global Control Region is an ancient gnathostome feature.

Authors:  Igor Schneider; Ivy Aneas; Andrew R Gehrke; Randall D Dahn; Marcelo A Nobrega; Neil H Shubin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-15       Impact factor: 11.205

Review 5.  High-throughput functional genomics using CRISPR-Cas9.

Authors:  Ophir Shalem; Neville E Sanjana; Feng Zhang
Journal:  Nat Rev Genet       Date:  2015-04-09       Impact factor: 53.242

6.  The Dlx5 and Dlx6 homeobox genes are essential for craniofacial, axial, and appendicular skeletal development.

Authors:  Raymond F Robledo; Lakshmi Rajan; Xue Li; Thomas Lufkin
Journal:  Genes Dev       Date:  2002-05-01       Impact factor: 11.361

Review 7.  cis-regulatory mutations are a genetic cause of human limb malformations.

Authors:  Julia E VanderMeer; Nadav Ahituv
Journal:  Dev Dyn       Date:  2011-01-11       Impact factor: 3.780

8.  Hox gene expression in teleost fins and the origin of vertebrate digits.

Authors:  P Sordino; F van der Hoeven; D Duboule
Journal:  Nature       Date:  1995-06-22       Impact factor: 49.962

9.  Fgf10 is essential for limb and lung formation.

Authors:  K Sekine; H Ohuchi; M Fujiwara; M Yamasaki; T Yoshizawa; T Sato; N Yagishita; D Matsui; Y Koga; N Itoh; S Kato
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

10.  Sp6 and Sp8 transcription factors control AER formation and dorsal-ventral patterning in limb development.

Authors:  Endika Haro; Irene Delgado; Marisa Junco; Yoshihiko Yamada; Ahmed Mansouri; Kerby C Oberg; Marian A Ros
Journal:  PLoS Genet       Date:  2014-08-28       Impact factor: 5.917

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  39 in total

1.  An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice.

Authors:  João Pl Castro; Michelle N Yancoskie; Campbell Rolian; Yingguang Frank Chan; Marta Marchini; Stefanie Belohlavy; Layla Hiramatsu; Marek Kučka; William H Beluch; Ronald Naumann; Isabella Skuplik; John Cobb; Nicholas H Barton
Journal:  Elife       Date:  2019-06-06       Impact factor: 8.140

2.  Characterization of cis-regulatory elements for Fgf10 expression in the chick embryo.

Authors:  Hiroko Kawakami; Austin Johnson; Yu Fujita; Avery Swearer; Naoyuki Wada; Yasuhiko Kawakami
Journal:  Dev Dyn       Date:  2018-11-22       Impact factor: 3.780

3.  Pigeon foot feathering reveals conserved limb identity networks.

Authors:  Elena F Boer; Hannah F Van Hollebeke; Sungdae Park; Carlos R Infante; Douglas B Menke; Michael D Shapiro
Journal:  Dev Biol       Date:  2019-06-24       Impact factor: 3.582

4.  Developmental genomics of limb malformations: Allelic series in association with gene dosage effects contribute to the clinical variability.

Authors:  Ruizhi Duan; Hadia Hijazi; Elif Yilmaz Gulec; Hatice Koçak Eker; Silvia R Costa; Yavuz Sahin; Zeynep Ocak; Sedat Isikay; Ozge Ozalp; Sevcan Bozdogan; Huseyin Aslan; Nursel Elcioglu; Débora R Bertola; Alper Gezdirici; Haowei Du; Jawid M Fatih; Christopher M Grochowski; Gulsen Akay; Shalini N Jhangiani; Ender Karaca; Shen Gu; Zeynep Coban-Akdemir; Jennifer E Posey; Yavuz Bayram; V Reid Sutton; Claudia M B Carvalho; Davut Pehlivan; Richard A Gibbs; James R Lupski
Journal:  HGG Adv       Date:  2022-08-04

5.  An MTF1 binding site disrupted by a homozygous variant in the promoter of ATP7B likely causes Wilson Disease.

Authors:  Heidi I Chen; Karthik A Jagadeesh; Johannes Birgmeier; Aaron M Wenger; Harendra Guturu; Susan Schelley; Jonathan A Bernstein; Gill Bejerano
Journal:  Eur J Hum Genet       Date:  2018-08-07       Impact factor: 4.246

6.  Identification of a regeneration-organizing cell in the Xenopus tail.

Authors:  C Aztekin; T W Hiscock; J C Marioni; J B Gurdon; B D Simons; J Jullien
Journal:  Science       Date:  2019-05-17       Impact factor: 47.728

7.  Noncoding copy-number variations are associated with congenital limb malformation.

Authors:  Ricarda Flöttmann; Bjørt K Kragesteen; Sinje Geuer; Magdalena Socha; Lila Allou; Anna Sowińska-Seidler; Laure Bosquillon de Jarcy; Johannes Wagner; Aleksander Jamsheer; Barbara Oehl-Jaschkowitz; Lars Wittler; Deepthi de Silva; Ingo Kurth; Idit Maya; Fernando Santos-Simarro; Wiebke Hülsemann; Eva Klopocki; Roger Mountford; Alan Fryer; Guntram Borck; Denise Horn; Pablo Lapunzina; Meredith Wilson; Bénédicte Mascrez; Denis Duboule; Stefan Mundlos; Malte Spielmann
Journal:  Genet Med       Date:  2017-10-12       Impact factor: 8.822

Review 8.  Function of peripheral nerves in the development and healing of tendon and bone.

Authors:  Ibtesam Rajpar; Ryan E Tomlinson
Journal:  Semin Cell Dev Biol       Date:  2021-05-13       Impact factor: 7.727

Review 9.  The power of zebrafish models for understanding the co-occurrence of craniofacial and limb disorders.

Authors:  Brittany T Truong; Kristin B Artinger
Journal:  Genesis       Date:  2021-01-04       Impact factor: 2.487

Review 10.  Non-model systems in mammalian forelimb evo-devo.

Authors:  Aidan O Howenstine; Alexa Sadier; Neal Anthwal; Clive Lf Lau; Karen E Sears
Journal:  Curr Opin Genet Dev       Date:  2021-03-06       Impact factor: 4.665

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