Literature DB >> 21495849

Reporting from the field: genetically encoded fluorescent reporters uncover signaling dynamics in living biological systems.

Sohum Mehta1, Jin Zhang.   

Abstract

Real-time visualization of a wide range of biochemical processes in living systems is being made possible through the development and application of genetically encoded fluorescent reporters. These versatile biosensors have proven themselves tailor-made to the study of signal transduction, and in this review, we discuss some of the unique insights that they continue to provide regarding the spatial organization and dynamic regulation of intracellular signaling networks. In addition, we explore the more recent push to expand the scope of biological phenomena that can be monitored using these reporters, while also considering the potential to integrate this highly adaptable technology with a number of emerging techniques that may significantly broaden our view of how networks of biochemical processes shape larger biological phenomena.

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Year:  2011        PMID: 21495849      PMCID: PMC4384825          DOI: 10.1146/annurev-biochem-060409-093259

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  156 in total

1.  Genetically encoded fluorescent reporters of protein tyrosine kinase activities in living cells.

Authors:  A Y Ting; K H Kain; R L Klemke; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2001-12-18       Impact factor: 11.205

Review 2.  Fluorescent probes of cell signaling.

Authors:  R Y Tsien
Journal:  Annu Rev Neurosci       Date:  1989       Impact factor: 12.449

Review 3.  Site-specific labeling of proteins with small molecules in live cells.

Authors:  Irwin Chen; Alice Y Ting
Journal:  Curr Opin Biotechnol       Date:  2005-02       Impact factor: 9.740

Review 4.  Deep tissue two-photon microscopy.

Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

Review 5.  Analyzing protein kinase dynamics in living cells with FRET reporters.

Authors:  Qiang Ni; Denis V Titov; Jin Zhang
Journal:  Methods       Date:  2006-11       Impact factor: 3.608

6.  Mitochondria buffer physiological calcium loads in cultured rat dorsal root ganglion neurons.

Authors:  J L Werth; S A Thayer
Journal:  J Neurosci       Date:  1994-01       Impact factor: 6.167

7.  Spatiotemporal analysis of differential Akt regulation in plasma membrane microdomains.

Authors:  Xinxin Gao; Jin Zhang
Journal:  Mol Biol Cell       Date:  2008-08-13       Impact factor: 4.138

8.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

9.  Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.

Authors:  Asako Sakaue-Sawano; Hiroshi Kurokawa; Toshifumi Morimura; Aki Hanyu; Hiroshi Hama; Hatsuki Osawa; Saori Kashiwagi; Kiyoko Fukami; Takaki Miyata; Hiroyuki Miyoshi; Takeshi Imamura; Masaharu Ogawa; Hisao Masai; Atsushi Miyawaki
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

10.  Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics.

Authors:  Carsten Grashoff; Brenton D Hoffman; Michael D Brenner; Ruobo Zhou; Maddy Parsons; Michael T Yang; Mark A McLean; Stephen G Sligar; Christopher S Chen; Taekjip Ha; Martin A Schwartz
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

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  51 in total

1.  Emerging in vivo analyses of cell function using fluorescence imaging (*).

Authors:  Jennifer Lippincott-Schwartz
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

2.  Genetically targetable and color-switching fluorescent probe.

Authors:  Dmytro A Yushchenko; Ming Zhang; Qi Yan; Alan S Waggoner; Marcel P Bruchez
Journal:  Chembiochem       Date:  2012-07-06       Impact factor: 3.164

3.  Fluorinated colloidal gold immunolabels for imaging select proteins in parallel with lipids using high-resolution secondary ion mass spectrometry.

Authors:  Robert L Wilson; Jessica F Frisz; William P Hanafin; Kevin J Carpenter; Ian D Hutcheon; Peter K Weber; Mary L Kraft
Journal:  Bioconjug Chem       Date:  2012-02-15       Impact factor: 4.774

Review 4.  We are all individuals: causes and consequences of non-genetic heterogeneity in mammalian cells.

Authors:  Alexander Loewer; Galit Lahav
Journal:  Curr Opin Genet Dev       Date:  2011-10-15       Impact factor: 5.578

5.  Using a kinase-inducible bimolecular switch to control enzyme activity in living cells.

Authors:  Sohum Mehta; Jin Zhang
Journal:  Curr Protoc Chem Biol       Date:  2013

Review 6.  Live-cell imaging of cell signaling using genetically encoded fluorescent reporters.

Authors:  Qiang Ni; Sohum Mehta; Jin Zhang
Journal:  FEBS J       Date:  2017-07-06       Impact factor: 5.542

Review 7.  Whole-Cell cAMP and PKA Activity are Epiphenomena, Nanodomain Signaling Matters.

Authors:  Donald M Bers; Yang K Xiang; Manuela Zaccolo
Journal:  Physiology (Bethesda)       Date:  2019-07-01

8.  FRET microscopy for real-time monitoring of signaling events in live cells using unimolecular biosensors.

Authors:  Julia U Sprenger; Ruwan K Perera; Konrad R Götz; Viacheslav O Nikolaev
Journal:  J Vis Exp       Date:  2012-08-20       Impact factor: 1.355

Review 9.  A network-oriented perspective on cardiac calcium signaling.

Authors:  Christopher H George; Dimitris Parthimos; Nicole C Silvester
Journal:  Am J Physiol Cell Physiol       Date:  2012-07-25       Impact factor: 4.249

10.  Live-cell fluorescence microscopy with molecular biosensors: what are we really measuring?

Authors:  Jason M Haugh
Journal:  Biophys J       Date:  2012-05-02       Impact factor: 4.033

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