Literature DB >> 21490393

Genes methylated by DNA methyltransferase 3b are similar in mouse intestine and human colon cancer.

Eveline J Steine1, Mathias Ehrich, George W Bell, Arjun Raj, Seshamma Reddy, Alexander van Oudenaarden, Rudolf Jaenisch, Heinz G Linhart.   

Abstract

Human cancer cells frequently have regions of their DNA hypermethylated, which results in transcriptional silencing of affected genes and promotion of tumor formation. However, it is still unknown whether cancer-associated aberrant DNA methylation is targeted to specific genomic regions, whether this methylation also occurs in noncancerous cells, and whether these epigenetic events are maintained in the absence of the initiating cause. Here we have addressed some of these issues by demonstrating that transgenic expression of DNA methyltransferase 3b (Dnmt3b) in the mouse colon initiates de novo DNA methylation of genes that are similar to genes that become methylated in human colon cancer. This is consistent with the notion that aberrant methylation in cancer may be attributable to targeting of specific sequences by Dnmt3b rather than to random methylation followed by clonal selection. We also showed that Dnmt3b-induced aberrant DNA methylation was maintained in regenerating tissue, even in the absence of continuous Dnmt3b expression. This supports the concept that transient stressors can cause permanent epigenetic changes in somatic stem cells and that these accumulate over the lifetime of an organism in analogy to DNA mutations.

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Year:  2011        PMID: 21490393      PMCID: PMC3083798          DOI: 10.1172/JCI43169

Source DB:  PubMed          Journal:  J Clin Invest        ISSN: 0021-9738            Impact factor:   14.808


  14 in total

1.  Polycomb complexes repress developmental regulators in murine embryonic stem cells.

Authors:  Laurie A Boyer; Kathrin Plath; Julia Zeitlinger; Tobias Brambrink; Lea A Medeiros; Tong Ihn Lee; Stuart S Levine; Marius Wernig; Adriana Tajonar; Mridula K Ray; George W Bell; Arie P Otte; Miguel Vidal; David K Gifford; Richard A Young; Rudolf Jaenisch
Journal:  Nature       Date:  2006-04-19       Impact factor: 49.962

2.  Epigenetic stem cell signature in cancer.

Authors:  Martin Widschwendter; Heidi Fiegl; Daniel Egle; Elisabeth Mueller-Holzner; Gilbert Spizzo; Christian Marth; Daniel J Weisenberger; Mihaela Campan; Joanne Young; Ian Jacobs; Peter W Laird
Journal:  Nat Genet       Date:  2006-12-31       Impact factor: 38.330

3.  Polycomb-mediated methylation on Lys27 of histone H3 pre-marks genes for de novo methylation in cancer.

Authors:  Yeshayahu Schlesinger; Ravid Straussman; Ilana Keshet; Shlomit Farkash; Merav Hecht; Joseph Zimmerman; Eran Eden; Zohar Yakhini; Etti Ben-Shushan; Benjamin E Reubinoff; Yehudit Bergman; Itamar Simon; Howard Cedar
Journal:  Nat Genet       Date:  2006-12-31       Impact factor: 38.330

Review 4.  Phenotypic plasticity and the epigenetics of human disease.

Authors:  Andrew P Feinberg
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

5.  Quantitative high-throughput analysis of DNA methylation patterns by base-specific cleavage and mass spectrometry.

Authors:  Mathias Ehrich; Matthew R Nelson; Patrick Stanssens; Marc Zabeau; Triantafillos Liloglou; George Xinarianos; Charles R Cantor; John K Field; Dirk van den Boom
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-21       Impact factor: 11.205

6.  Identification and isolation of candidate human colonic clonogenic cells based on cell surface integrin expression.

Authors:  Koji Fujimoto; R Daniel Beauchamp; Robert H Whitehead
Journal:  Gastroenterology       Date:  2002-12       Impact factor: 22.682

7.  Cell division is required for de novo methylation of CpG islands in bladder cancer cells.

Authors:  Mihaela Velicescu; Daniel J Weisenberger; Felicidad A Gonzales; Yvonne C Tsai; Carvell T Nguyen; Peter A Jones
Journal:  Cancer Res       Date:  2002-04-15       Impact factor: 12.701

8.  DNMT3B expression might contribute to CpG island methylator phenotype in colorectal cancer.

Authors:  Katsuhiko Nosho; Kaori Shima; Natsumi Irahara; Shoko Kure; Yoshifumi Baba; Gregory J Kirkner; Li Chen; Sumita Gokhale; Aditi Hazra; Donna Spiegelman; Edward L Giovannucci; Rudolf Jaenisch; Charles S Fuchs; Shuji Ogino
Journal:  Clin Cancer Res       Date:  2009-05-26       Impact factor: 12.531

9.  Identification of stem cells in small intestine and colon by marker gene Lgr5.

Authors:  Nick Barker; Johan H van Es; Jeroen Kuipers; Pekka Kujala; Maaike van den Born; Miranda Cozijnsen; Andrea Haegebarth; Jeroen Korving; Harry Begthel; Peter J Peters; Hans Clevers
Journal:  Nature       Date:  2007-10-14       Impact factor: 49.962

10.  CpG island methylation in a mouse model of lymphoma is driven by the genetic configuration of tumor cells.

Authors:  Rene Opavsky; Shu-Huei Wang; Prashant Trikha; Aparna Raval; Yuan Huang; Yue-Zhong Wu; Benjamin Rodriguez; Benjamin Keller; Sandya Liyanarachchi; Guo Wei; Ramana V Davuluri; Michael Weinstein; Dean Felsher; Michael Ostrowski; Gustavo Leone; Christoph Plass
Journal:  PLoS Genet       Date:  2007-08-16       Impact factor: 5.917

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  34 in total

1.  RRBSMAP: a fast, accurate and user-friendly alignment tool for reduced representation bisulfite sequencing.

Authors:  Yuanxin Xi; Christoph Bock; Fabian Müller; Deqiang Sun; Alexander Meissner; Wei Li
Journal:  Bioinformatics       Date:  2011-12-06       Impact factor: 6.937

Review 2.  Epigenetics and colorectal cancer.

Authors:  Victoria Valinluck Lao; William M Grady
Journal:  Nat Rev Gastroenterol Hepatol       Date:  2011-10-18       Impact factor: 46.802

3.  Deletion of the de novo DNA methyltransferase Dnmt3a promotes lung tumor progression.

Authors:  Qing Gao; Eveline J Steine; M Inmaculada Barrasa; Dirk Hockemeyer; Mathias Pawlak; Dongdong Fu; Seshamma Reddy; George W Bell; Rudolf Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2011-10-19       Impact factor: 11.205

4.  Targets and genomic constraints of ectopic Dnmt3b expression.

Authors:  Yingying Zhang; Jocelyn Charlton; Rahul Karnik; Isabel Beerman; Zachary D Smith; Hongcang Gu; Patrick Boyle; Xiaoli Mi; Kendell Clement; Ramona Pop; Andreas Gnirke; Derrick J Rossi; Alexander Meissner
Journal:  Elife       Date:  2018-11-23       Impact factor: 8.140

5.  Loss of Dnmt3b function upregulates the tumor modifier Ment and accelerates mouse lymphomagenesis.

Authors:  Ryan A Hlady; Slavomira Novakova; Jana Opavska; David Klinkebiel; Staci L Peters; Juraj Bies; Jay Hannah; Javeed Iqbal; Kristi M Anderson; Hollie M Siebler; Lynette M Smith; Timothy C Greiner; Dhundy Bastola; Shantaram Joshi; Oksana Lockridge; Melanie A Simpson; Dean W Felsher; Kay-Uwe Wagner; Wing C Chan; Judith K Christman; Rene Opavsky
Journal:  J Clin Invest       Date:  2011-12-01       Impact factor: 14.808

6.  DNA methyltransferase 3b silencing affects locus-specific DNA methylation and inhibits proliferation, migration and invasion in human hepatocellular carcinoma SMMC-7721 and BEL-7402 cells.

Authors:  Jia-Chen Wang; Zhao Wang; Yu-Xia Fan; Ya-Qing Si; Jia-Xiang Wang
Journal:  Oncol Lett       Date:  2015-03-26       Impact factor: 2.967

7.  All Things in Moderation: Prevention of Intestinal Adenomas by DNA Hypomethylation.

Authors:  Kwang-Ho Lee; Peter W Laird
Journal:  Cancer Prev Res (Phila)       Date:  2016-05-17

8.  Fundamental differences in promoter CpG island DNA hypermethylation between human cancer and genetically engineered mouse models of cancer.

Authors:  Scott J Diede; Zizhen Yao; C Chip Keyes; Ashlee E Tyler; Joyoti Dey; Christopher S Hackett; Katrina Elsaesser; Christopher J Kemp; Paul E Neiman; William A Weiss; James M Olson; Stephen J Tapscott
Journal:  Epigenetics       Date:  2013-10-09       Impact factor: 4.528

Review 9.  Molecular pathological epidemiology of epigenetics: emerging integrative science to analyze environment, host, and disease.

Authors:  Shuji Ogino; Paul Lochhead; Andrew T Chan; Reiko Nishihara; Eunyoung Cho; Brian M Wolpin; Jeffrey A Meyerhardt; Alexander Meissner; Eva S Schernhammer; Charles S Fuchs; Edward Giovannucci
Journal:  Mod Pathol       Date:  2013-01-11       Impact factor: 7.842

10.  A prospective study of duration of smoking cessation and colorectal cancer risk by epigenetics-related tumor classification.

Authors:  Reiko Nishihara; Teppei Morikawa; Aya Kuchiba; Paul Lochhead; Mai Yamauchi; Xiaoyun Liao; Yu Imamura; Katsuhiko Nosho; Kaori Shima; Ichiro Kawachi; Zhi Rong Qian; Charles S Fuchs; Andrew T Chan; Edward Giovannucci; Shuji Ogino
Journal:  Am J Epidemiol       Date:  2013-06-20       Impact factor: 4.897

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