Literature DB >> 21489773

Damage site chromatin: open or closed?

Alexander R Ball1, Kyoko Yokomori.   

Abstract

Technical advances in recent years, such as laser microirradiation and chromatin immunoprecipitation, have led to further understanding of DNA damage responses and repair processes as they happen in vivo and have allowed us to better evaluate the activities of new factors at damage sites. Facilitated by these tools, recent studies identified the unexpected roles of heterochromatin factors in DNA damage recognition and repair, which also involves poly(ADP-ribose) polymerases (PARPs). The results suggest that chromatin at damage sites may be quite structurally dynamic during the repair process, with transient intervals of 'closed' configurations before a more 'open' arrangement that allows the repair machinery to access damaged DNA.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21489773      PMCID: PMC3109140          DOI: 10.1016/j.ceb.2011.03.012

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  58 in total

1.  Biological dose estimation of UVA laser microirradiation utilizing charged particle-induced protein foci.

Authors:  J Splinter; B Jakob; M Lang; K Yano; J Engelhardt; S W Hell; D J Chen; M Durante; G Taucher-Scholz
Journal:  Mutagenesis       Date:  2010-02-18       Impact factor: 3.000

2.  The SUMO modification pathway is involved in the BRCA1 response to genotoxic stress.

Authors:  Joanna R Morris; Chris Boutell; Melanie Keppler; Ruth Densham; Daniel Weekes; Amin Alamshah; Laura Butler; Yaron Galanty; Laurent Pangon; Tai Kiuchi; Tony Ng; Ellen Solomon
Journal:  Nature       Date:  2009-12-17       Impact factor: 49.962

Review 3.  Spatiotemporal analysis of DNA repair using charged particle radiation.

Authors:  F Tobias; M Durante; G Taucher-Scholz; B Jakob
Journal:  Mutat Res       Date:  2009-11-26       Impact factor: 2.433

Review 4.  PARP inhibition: PARP1 and beyond.

Authors:  Michèle Rouleau; Anand Patel; Michael J Hendzel; Scott H Kaufmann; Guy G Poirier
Journal:  Nat Rev Cancer       Date:  2010-03-04       Impact factor: 60.716

Review 5.  The PARP side of the nucleus: molecular actions, physiological outcomes, and clinical targets.

Authors:  Raga Krishnakumar; W Lee Kraus
Journal:  Mol Cell       Date:  2010-07-09       Impact factor: 17.970

Review 6.  Novel histone deacetylase inhibitors in clinical trials as anti-cancer agents.

Authors:  Jiahuai Tan; Shundong Cang; Yuehua Ma; Richard L Petrillo; Delong Liu
Journal:  J Hematol Oncol       Date:  2010-02-04       Impact factor: 17.388

7.  The chromatin-remodeling factor CHD4 coordinates signaling and repair after DNA damage.

Authors:  Dorthe Helena Larsen; Catherine Poinsignon; Thorkell Gudjonsson; Christoffel Dinant; Mark R Payne; Flurina J Hari; Jannie M Rendtlew Danielsen; Patrice Menard; Jette Christensen Sand; Manuel Stucki; Claudia Lukas; Jiri Bartek; Jens S Andersen; Jiri Lukas
Journal:  J Cell Biol       Date:  2010-08-30       Impact factor: 10.539

8.  The NuRD chromatin-remodeling complex regulates signaling and repair of DNA damage.

Authors:  Godelieve Smeenk; Wouter W Wiegant; Hans Vrolijk; Aldo P Solari; Albert Pastink; Haico van Attikum
Journal:  J Cell Biol       Date:  2010-08-30       Impact factor: 10.539

9.  Human HDAC1 and HDAC2 function in the DNA-damage response to promote DNA nonhomologous end-joining.

Authors:  Kyle M Miller; Jorrit V Tjeertes; Julia Coates; Gaëlle Legube; Sophie E Polo; Sébastien Britton; Stephen P Jackson
Journal:  Nat Struct Mol Biol       Date:  2010-08-29       Impact factor: 15.369

10.  Mammalian SUMO E3-ligases PIAS1 and PIAS4 promote responses to DNA double-strand breaks.

Authors:  Yaron Galanty; Rimma Belotserkovskaya; Julia Coates; Sophie Polo; Kyle M Miller; Stephen P Jackson
Journal:  Nature       Date:  2009-12-17       Impact factor: 49.962

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  17 in total

1.  Femtosecond near-infrared laser microirradiation reveals a crucial role for PARP signaling on factor assemblies at DNA damage sites.

Authors:  Gladys Mae Saquilabon Cruz; Xiangduo Kong; Bárbara Alcaraz Silva; Nima Khatibzadeh; Ryan Thai; Michael W Berns; Kyoko Yokomori
Journal:  Nucleic Acids Res       Date:  2015-09-30       Impact factor: 16.971

2.  Chromatin dynamics during DNA repair revealed by pair correlation analysis of molecular flow in the nucleus.

Authors:  Elizabeth Hinde; Xiangduo Kong; Kyoko Yokomori; Enrico Gratton
Journal:  Biophys J       Date:  2014-07-01       Impact factor: 4.033

3.  Laser Microirradiation to Study In Vivo Cellular Responses to Simple and Complex DNA Damage.

Authors:  Xiangduo Kong; Gladys M S Cruz; Bárbara A Silva; Nicole M Wakida; Nima Khatibzadeh; Michael W Berns; Kyoko Yokomori
Journal:  J Vis Exp       Date:  2018-01-31       Impact factor: 1.355

4.  SIRT1 collaborates with ATM and HDAC1 to maintain genomic stability in neurons.

Authors:  Matthew M Dobbin; Ram Madabhushi; Ling Pan; Yue Chen; Dohoon Kim; Jun Gao; Biafra Ahanonu; Ping-Chieh Pao; Yi Qiu; Yingming Zhao; Li-Huei Tsai
Journal:  Nat Neurosci       Date:  2013-07-14       Impact factor: 24.884

5.  Essential role for DNA-PK-mediated phosphorylation of NR4A nuclear orphan receptors in DNA double-strand break repair.

Authors:  Michal Malewicz; Banafsheh Kadkhodaei; Nigel Kee; Nikolaos Volakakis; Ulf Hellman; Kristina Viktorsson; Chuen Yan Leung; Benjamin Chen; Rolf Lewensohn; Dik C van Gent; David J Chen; Thomas Perlmann
Journal:  Genes Dev       Date:  2011-10-01       Impact factor: 11.361

6.  BRG1, the ATPase subunit of SWI/SNF chromatin remodeling complex, interacts with HDAC2 to modulate telomerase expression in human cancer cells.

Authors:  Shu Wu; Yuanlong Ge; Laiqiang Huang; Haiying Liu; Yong Xue; Yong Zhao
Journal:  Cell Cycle       Date:  2014       Impact factor: 4.534

7.  Radiation-induced alterations in histone modification patterns and their potential impact on short-term radiation effects.

Authors:  Anna A Friedl; Belinda Mazurek; Doris M Seiler
Journal:  Front Oncol       Date:  2012-09-19       Impact factor: 6.244

8.  Condensin I recruitment to base damage-enriched DNA lesions is modulated by PARP1.

Authors:  Xiangduo Kong; Jared Stephens; Alexander R Ball; Jason T Heale; Daniel A Newkirk; Michael W Berns; Kyoko Yokomori
Journal:  PLoS One       Date:  2011-08-12       Impact factor: 3.240

Review 9.  Reprogramming cellular events by poly(ADP-ribose)-binding proteins.

Authors:  Jana Krietsch; Michèle Rouleau; Émilie Pic; Chantal Ethier; Ted M Dawson; Valina L Dawson; Jean-Yves Masson; Guy G Poirier; Jean-Philippe Gagné
Journal:  Mol Aspects Med       Date:  2012-12-23

Review 10.  Role of Biomarkers in the Development of PARP Inhibitors.

Authors:  Bratati Ganguly; Sonia C Dolfi; Lorna Rodriguez-Rodriguez; Shridar Ganesan; Kim M Hirshfield
Journal:  Biomark Cancer       Date:  2016-03-09
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