Literature DB >> 21482102

DNA polymerases provide a canon of strategies for translesion synthesis past oxidatively generated lesions.

Karl E Zahn1, Susan S Wallace, Sylvie Doublié.   

Abstract

Deducing the structure of the DNA double helix in 1953 implied the mode of its replication: Watson-Crick (WC) base pairing might instruct an enzyme, now known as the DNA polymerase, during the synthesis of a daughter stand complementary to a single strand of the parental double helix. What has become increasingly clear in the last 60 years, however, is that adducted and oxidatively generated DNA bases are ubiquitous in physiological DNA, and all organisms conserve multiple DNA polymerases specialized for DNA synthesis opposite these damaged templates. Here, we review recent crystal structures depicting replicative and bypass DNA polymerases encountering two typical lesions arising from the oxidation of DNA: abasic sites, which block the replication fork, and the miscoding premutagenic lesion 7,8-dihydro-8-oxoguanine (8-oxoG).
Copyright © 2011 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2011        PMID: 21482102      PMCID: PMC3112272          DOI: 10.1016/j.sbi.2011.03.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  57 in total

1.  Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis.

Authors:  J Trincao; R E Johnson; C R Escalante; S Prakash; L Prakash; A K Aggarwal
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

Review 2.  Active site tightness and substrate fit in DNA replication.

Authors:  Eric T Kool
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

3.  Crystallographic snapshots of a replicative DNA polymerase encountering an abasic site.

Authors:  Matthew Hogg; Susan S Wallace; Sylvie Doublié
Journal:  EMBO J       Date:  2004-04-01       Impact factor: 11.598

4.  Snapshots of replication through an abasic lesion; structural basis for base substitutions and frameshifts.

Authors:  Hong Ling; François Boudsocq; Roger Woodgate; Wei Yang
Journal:  Mol Cell       Date:  2004-03-12       Impact factor: 17.970

Review 5.  DNA replication fidelity.

Authors:  Thomas A Kunkel
Journal:  J Biol Chem       Date:  2004-02-26       Impact factor: 5.157

6.  Unique active site promotes error-free replication opposite an 8-oxo-guanine lesion by human DNA polymerase iota.

Authors:  Kevin N Kirouac; Hong Ling
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

7.  Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing.

Authors:  Deepak T Nair; Robert E Johnson; Satya Prakash; Louise Prakash; Aneel K Aggarwal
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

8.  Error-prone replication of oxidatively damaged DNA by a high-fidelity DNA polymerase.

Authors:  Gerald W Hsu; Matthias Ober; Thomas Carell; Lorena S Beese
Journal:  Nature       Date:  2004-08-22       Impact factor: 49.962

9.  Structure of DNA polymerase beta with the mutagenic DNA lesion 8-oxodeoxyguanine reveals structural insights into its coding potential.

Authors:  Joseph M Krahn; William A Beard; Holly Miller; Arthur P Grollman; Samuel H Wilson
Journal:  Structure       Date:  2003-01       Impact factor: 5.006

10.  Insertion of specific bases during DNA synthesis past the oxidation-damaged base 8-oxodG.

Authors:  S Shibutani; M Takeshita; A P Grollman
Journal:  Nature       Date:  1991-01-31       Impact factor: 49.962

View more
  23 in total

1.  Amino acid templating mechanisms in selection of nucleotides opposite abasic sites by a family a DNA polymerase.

Authors:  Samra Obeid; Wolfram Welte; Kay Diederichs; Andreas Marx
Journal:  J Biol Chem       Date:  2012-02-07       Impact factor: 5.157

2.  Structure of monoubiquitinated PCNA: implications for DNA polymerase switching and Okazaki fragment maturation.

Authors:  Zhongtao Zhang; Sufang Zhang; Szu Hua Sharon Lin; Xiaoxiao Wang; Licheng Wu; Ernest Y C Lee; Marietta Y W T Lee
Journal:  Cell Cycle       Date:  2012-06-01       Impact factor: 4.534

Review 3.  DNA glycosylases search for and remove oxidized DNA bases.

Authors:  Susan S Wallace
Journal:  Environ Mol Mutagen       Date:  2013-10-07       Impact factor: 3.216

4.  Repriming of DNA synthesis at stalled replication forks by human PrimPol.

Authors:  Silvana Mourón; Sara Rodriguez-Acebes; María I Martínez-Jiménez; Sara García-Gómez; Sandra Chocrón; Luis Blanco; Juan Méndez
Journal:  Nat Struct Mol Biol       Date:  2013-11-17       Impact factor: 15.369

5.  Roles of Residues Arg-61 and Gln-38 of Human DNA Polymerase η in Bypass of Deoxyguanosine and 7,8-Dihydro-8-oxo-2'-deoxyguanosine.

Authors:  Yan Su; Amritraj Patra; Joel M Harp; Martin Egli; F Peter Guengerich
Journal:  J Biol Chem       Date:  2015-05-06       Impact factor: 5.157

Review 6.  Impediments to replication fork movement: stabilisation, reactivation and genome instability.

Authors:  Sarah Lambert; Antony M Carr
Journal:  Chromosoma       Date:  2013-02-28       Impact factor: 4.316

Review 7.  Close encounters: Moving along bumps, breaks, and bubbles on expanded trinucleotide tracts.

Authors:  Aris A Polyzos; Cynthia T McMurray
Journal:  DNA Repair (Amst)       Date:  2017-06-09

Review 8.  Rules of engagement for base excision repair in chromatin.

Authors:  Ian D Odell; Susan S Wallace; David S Pederson
Journal:  J Cell Physiol       Date:  2013-02       Impact factor: 6.384

9.  Contribution of partial charge interactions and base stacking to the efficiency of primer extension at and beyond abasic sites in DNA.

Authors:  Shuangluo Xia; Ashwani Vashishtha; David Bulkley; Soo Hyun Eom; Jimin Wang; William H Konigsberg
Journal:  Biochemistry       Date:  2012-06-07       Impact factor: 3.162

Review 10.  DNA polymerase delta in DNA replication and genome maintenance.

Authors:  Marc J Prindle; Lawrence A Loeb
Journal:  Environ Mol Mutagen       Date:  2012-10-13       Impact factor: 3.216

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.