Literature DB >> 21479735

XCEDE: an extensible schema for biomedical data.

Syam Gadde1, Nicole Aucoin, Jeffrey S Grethe, David B Keator, Daniel S Marcus, Steve Pieper.   

Abstract

The XCEDE (XML-based Clinical and Experimental Data Exchange) XML schema, developed by members of the BIRN (Biomedical Informatics Research Network), provides an extensive metadata hierarchy for storing, describing and documenting the data generated by scientific studies. Currently at version 2.0, the XCEDE schema serves as a specification for the exchange of scientific data between databases, analysis tools, and web services. It provides a structured metadata hierarchy, storing information relevant to various aspects of an experiment (project, subject, protocol, etc.). Each hierarchy level also provides for the storage of data provenance information allowing for a traceable record of processing and/or changes to the underlying data. The schema is extensible to support the needs of various data modalities and to express types of data not originally envisioned by the developers. The latest version of the XCEDE schema and manual are available from http://www.xcede.org/ .

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Mesh：

Year:  2012        PMID： 21479735      PMCID： PMC3836560          DOI： 10.1007/s12021-011-9119-9

Source DB:  PubMed          Journal:  Neuroinformatics        ISSN： 1539-2791


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  8 in total
  30 in total

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6.  Modeling functional Magnetic Resonance Imaging (fMRI) experimental variables in the Ontology of Experimental Variables and Values (OoEVV).

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Review 7.  Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community.

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8.  Towards structured sharing of raw and derived neuroimaging data across existing resources.

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9.  Improving data availability for brain image biobanking in healthy subjects: Practice-based suggestions from an international multidisciplinary working group.

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10.  The Function Biomedical Informatics Research Network Data Repository.

Authors:  David B Keator; Theo G M van Erp; Jessica A Turner; Gary H Glover; Bryon A Mueller; Thomas T Liu; James T Voyvodic; Jerod Rasmussen; Vince D Calhoun; Hyo Jong Lee; Arthur W Toga; Sarah McEwen; Judith M Ford; Daniel H Mathalon; Michele Diaz; Daniel S O'Leary; H Jeremy Bockholt; Syam Gadde; Adrian Preda; Cynthia G Wible; Hal S Stern; Aysenil Belger; Gregory McCarthy; Burak Ozyurt; Steven G Potkin
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