Literature DB >> 26267019

Neuroinformatics Software Applications Supporting Electronic Data Capture, Management, and Sharing for the Neuroimaging Community.

B Nolan Nichols1, Kilian M Pohl.   

Abstract

Accelerating insight into the relation between brain and behavior entails conducting small and large-scale research endeavors that lead to reproducible results. Consensus is emerging between funding agencies, publishers, and the research community that data sharing is a fundamental requirement to ensure all such endeavors foster data reuse and fuel reproducible discoveries. Funding agency and publisher mandates to share data are bolstered by a growing number of data sharing efforts that demonstrate how information technologies can enable meaningful data reuse. Neuroinformatics evaluates scientific needs and develops solutions to facilitate the use of data across the cognitive and neurosciences. For example, electronic data capture and management tools designed to facilitate human neurocognitive research can decrease the setup time of studies, improve quality control, and streamline the process of harmonizing, curating, and sharing data across data repositories. In this article we outline the advantages and disadvantages of adopting software applications that support these features by reviewing the tools available and then presenting two contrasting neuroimaging study scenarios in the context of conducting a cross-sectional and a multisite longitudinal study.

Entities:  

Mesh:

Year:  2015        PMID: 26267019      PMCID: PMC5400666          DOI: 10.1007/s11065-015-9293-x

Source DB:  PubMed          Journal:  Neuropsychol Rev        ISSN: 1040-7308            Impact factor:   7.444


  82 in total

1.  Supporting databases for neuroscience research.

Authors:  Gordon M Shepherd
Journal:  J Neurosci       Date:  2002-03-01       Impact factor: 6.167

2.  The Extensible Neuroimaging Archive Toolkit: an informatics platform for managing, exploring, and sharing neuroimaging data.

Authors:  Daniel S Marcus; Timothy R Olsen; Mohana Ramaratnam; Randy L Buckner
Journal:  Neuroinformatics       Date:  2007

3.  Research electronic data capture (REDCap)--a metadata-driven methodology and workflow process for providing translational research informatics support.

Authors:  Paul A Harris; Robert Taylor; Robert Thielke; Jonathon Payne; Nathaniel Gonzalez; Jose G Conde
Journal:  J Biomed Inform       Date:  2008-09-30       Impact factor: 6.317

4.  Bio2RDF: towards a mashup to build bioinformatics knowledge systems.

Authors:  François Belleau; Marc-Alexandre Nolin; Nicole Tourigny; Philippe Rigault; Jean Morissette
Journal:  J Biomed Inform       Date:  2008-03-21       Impact factor: 6.317

Review 5.  Power failure: why small sample size undermines the reliability of neuroscience.

Authors:  Katherine S Button; John P A Ioannidis; Claire Mokrysz; Brian A Nosek; Jonathan Flint; Emma S J Robinson; Marcus R Munafò
Journal:  Nat Rev Neurosci       Date:  2013-04-10       Impact factor: 34.870

6.  The Three NITRCs: A Guide to Neuroimaging Neuroinformatics Resources.

Authors:  David N Kennedy; Christian Haselgrove; Jon Riehl; Nina Preuss; Robert Buccigrossi
Journal:  Neuroinformatics       Date:  2015-07

7.  The Uniform Data Set (UDS): clinical and cognitive variables and descriptive data from Alzheimer Disease Centers.

Authors:  John C Morris; Sandra Weintraub; Helena C Chui; Jeffrey Cummings; Charles Decarli; Steven Ferris; Norman L Foster; Douglas Galasko; Neill Graff-Radford; Elaine R Peskind; Duane Beekly; Erin M Ramos; Walter A Kukull
Journal:  Alzheimer Dis Assoc Disord       Date:  2006 Oct-Dec       Impact factor: 2.703

Review 8.  The ENIGMA Consortium: large-scale collaborative analyses of neuroimaging and genetic data.

Authors:  Paul M Thompson; Jason L Stein; Sarah E Medland; Derrek P Hibar; Alejandro Arias Vasquez; Miguel E Renteria; Roberto Toro; Neda Jahanshad; Gunter Schumann; Barbara Franke; Margaret J Wright; Nicholas G Martin; Ingrid Agartz; Martin Alda; Saud Alhusaini; Laura Almasy; Jorge Almeida; Kathryn Alpert; Nancy C Andreasen; Ole A Andreassen; Liana G Apostolova; Katja Appel; Nicola J Armstrong; Benjamin Aribisala; Mark E Bastin; Michael Bauer; Carrie E Bearden; Orjan Bergmann; Elisabeth B Binder; John Blangero; Henry J Bockholt; Erlend Bøen; Catherine Bois; Dorret I Boomsma; Tom Booth; Ian J Bowman; Janita Bralten; Rachel M Brouwer; Han G Brunner; David G Brohawn; Randy L Buckner; Jan Buitelaar; Kazima Bulayeva; Juan R Bustillo; Vince D Calhoun; Dara M Cannon; Rita M Cantor; Melanie A Carless; Xavier Caseras; Gianpiero L Cavalleri; M Mallar Chakravarty; Kiki D Chang; Christopher R K Ching; Andrea Christoforou; Sven Cichon; Vincent P Clark; Patricia Conrod; Giovanni Coppola; Benedicto Crespo-Facorro; Joanne E Curran; Michael Czisch; Ian J Deary; Eco J C de Geus; Anouk den Braber; Giuseppe Delvecchio; Chantal Depondt; Lieuwe de Haan; Greig I de Zubicaray; Danai Dima; Rali Dimitrova; Srdjan Djurovic; Hongwei Dong; Gary Donohoe; Ravindranath Duggirala; Thomas D Dyer; Stefan Ehrlich; Carl Johan Ekman; Torbjørn Elvsåshagen; Louise Emsell; Susanne Erk; Thomas Espeseth; Jesen Fagerness; Scott Fears; Iryna Fedko; Guillén Fernández; Simon E Fisher; Tatiana Foroud; Peter T Fox; Clyde Francks; Sophia Frangou; Eva Maria Frey; Thomas Frodl; Vincent Frouin; Hugh Garavan; Sudheer Giddaluru; David C Glahn; Beata Godlewska; Rita Z Goldstein; Randy L Gollub; Hans J Grabe; Oliver Grimm; Oliver Gruber; Tulio Guadalupe; Raquel E Gur; Ruben C Gur; Harald H H Göring; Saskia Hagenaars; Tomas Hajek; Geoffrey B Hall; Jeremy Hall; John Hardy; Catharina A Hartman; Johanna Hass; Sean N Hatton; Unn K Haukvik; Katrin Hegenscheid; Andreas Heinz; Ian B Hickie; Beng-Choon Ho; David Hoehn; Pieter J Hoekstra; Marisa Hollinshead; Avram J Holmes; Georg Homuth; Martine Hoogman; L Elliot Hong; Norbert Hosten; Jouke-Jan Hottenga; Hilleke E Hulshoff Pol; Kristy S Hwang; Clifford R Jack; Mark Jenkinson; Caroline Johnston; Erik G Jönsson; René S Kahn; Dalia Kasperaviciute; Sinead Kelly; Sungeun Kim; Peter Kochunov; Laura Koenders; Bernd Krämer; John B J Kwok; Jim Lagopoulos; Gonzalo Laje; Mikael Landen; Bennett A Landman; John Lauriello; Stephen M Lawrie; Phil H Lee; Stephanie Le Hellard; Herve Lemaître; Cassandra D Leonardo; Chiang-Shan Li; Benny Liberg; David C Liewald; Xinmin Liu; Lorna M Lopez; Eva Loth; Anbarasu Lourdusamy; Michelle Luciano; Fabio Macciardi; Marise W J Machielsen; Glenda M Macqueen; Ulrik F Malt; René Mandl; Dara S Manoach; Jean-Luc Martinot; Mar Matarin; Karen A Mather; Manuel Mattheisen; Morten Mattingsdal; Andreas Meyer-Lindenberg; Colm McDonald; Andrew M McIntosh; Francis J McMahon; Katie L McMahon; Eva Meisenzahl; Ingrid Melle; Yuri Milaneschi; Sebastian Mohnke; Grant W Montgomery; Derek W Morris; Eric K Moses; Bryon A Mueller; Susana Muñoz Maniega; Thomas W Mühleisen; Bertram Müller-Myhsok; Benson Mwangi; Matthias Nauck; Kwangsik Nho; Thomas E Nichols; Lars-Göran Nilsson; Allison C Nugent; Lars Nyberg; Rene L Olvera; Jaap Oosterlaan; Roel A Ophoff; Massimo Pandolfo; Melina Papalampropoulou-Tsiridou; Martina Papmeyer; Tomas Paus; Zdenka Pausova; Godfrey D Pearlson; Brenda W Penninx; Charles P Peterson; Andrea Pfennig; Mary Phillips; G Bruce Pike; Jean-Baptiste Poline; Steven G Potkin; Benno Pütz; Adaikalavan Ramasamy; Jerod Rasmussen; Marcella Rietschel; Mark Rijpkema; Shannon L Risacher; Joshua L Roffman; Roberto Roiz-Santiañez; Nina Romanczuk-Seiferth; Emma J Rose; Natalie A Royle; Dan Rujescu; Mina Ryten; Perminder S Sachdev; Alireza Salami; Theodore D Satterthwaite; Jonathan Savitz; Andrew J Saykin; Cathy Scanlon; Lianne Schmaal; Hugo G Schnack; Andrew J Schork; S Charles Schulz; Remmelt Schür; Larry Seidman; Li Shen; Jody M Shoemaker; Andrew Simmons; Sanjay M Sisodiya; Colin Smith; Jordan W Smoller; Jair C Soares; Scott R Sponheim; Emma Sprooten; John M Starr; Vidar M Steen; Stephen Strakowski; Lachlan Strike; Jessika Sussmann; Philipp G Sämann; Alexander Teumer; Arthur W Toga; Diana Tordesillas-Gutierrez; Daniah Trabzuni; Sarah Trost; Jessica Turner; Martijn Van den Heuvel; Nic J van der Wee; Kristel van Eijk; Theo G M van Erp; Neeltje E M van Haren; Dennis van 't Ent; Marie-Jose van Tol; Maria C Valdés Hernández; Dick J Veltman; Amelia Versace; Henry Völzke; Robert Walker; Henrik Walter; Lei Wang; Joanna M Wardlaw; Michael E Weale; Michael W Weiner; Wei Wen; Lars T Westlye; Heather C Whalley; Christopher D Whelan; Tonya White; Anderson M Winkler; Katharina Wittfeld; Girma Woldehawariat; Christiane Wolf; David Zilles; Marcel P Zwiers; Anbupalam Thalamuthu; Peter R Schofield; Nelson B Freimer; Natalia S Lawrence; Wayne Drevets
Journal:  Brain Imaging Behav       Date:  2014-06       Impact factor: 3.978

9.  Data sharing in neuroimaging research.

Authors:  Jean-Baptiste Poline; Janis L Breeze; Satrajit Ghosh; Krzysztof Gorgolewski; Yaroslav O Halchenko; Michael Hanke; Christian Haselgrove; Karl G Helmer; David B Keator; Daniel S Marcus; Russell A Poldrack; Yannick Schwartz; John Ashburner; David N Kennedy
Journal:  Front Neuroinform       Date:  2012-04-05       Impact factor: 4.081

10.  Derived Data Storage and Exchange Workflow for Large-Scale Neuroimaging Analyses on the BIRN Grid.

Authors:  David B Keator; Dingying Wei; Syam Gadde; Jeremy Bockholt; Jeffrey S Grethe; Daniel Marcus; Nicole Aucoin; Ibrahim B Ozyurt
Journal:  Front Neuroinform       Date:  2009-09-07       Impact factor: 4.081

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  20 in total

1.  Cognitive, emotion control, and motor performance of adolescents in the NCANDA study: Contributions from alcohol consumption, age, sex, ethnicity, and family history of addiction.

Authors:  Edith V Sullivan; Ty Brumback; Susan F Tapert; Rosemary Fama; Devin Prouty; Sandra A Brown; Kevin Cummins; Wesley K Thompson; Ian M Colrain; Fiona C Baker; Michael D De Bellis; Stephen R Hooper; Duncan B Clark; Tammy Chung; Bonnie J Nagel; B Nolan Nichols; Torsten Rohlfing; Weiwei Chu; Kilian M Pohl; Adolf Pfefferbaum
Journal:  Neuropsychology       Date:  2016-01-11       Impact factor: 3.295

2.  Harmonizing DTI measurements across scanners to examine the development of white matter microstructure in 803 adolescents of the NCANDA study.

Authors:  Kilian M Pohl; Edith V Sullivan; Torsten Rohlfing; Weiwei Chu; Dongjin Kwon; B Nolan Nichols; Yong Zhang; Sandra A Brown; Susan F Tapert; Kevin Cummins; Wesley K Thompson; Ty Brumback; Ian M Colrain; Fiona C Baker; Devin Prouty; Michael D De Bellis; James T Voyvodic; Duncan B Clark; Claudiu Schirda; Bonnie J Nagel; Adolf Pfefferbaum
Journal:  Neuroimage       Date:  2016-02-10       Impact factor: 6.556

3.  Longitudinally consistent estimates of intrinsic functional networks.

Authors:  Qingyu Zhao; Dongjin Kwon; Eva M Müller-Oehring; Anne-Pascale Le Berre; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Hum Brain Mapp       Date:  2019-02-25       Impact factor: 5.038

4.  Regional growth trajectories of cortical myelination in adolescents and young adults: longitudinal validation and functional correlates.

Authors:  Dongjin Kwon; Adolf Pfefferbaum; Edith V Sullivan; Kilian M Pohl
Journal:  Brain Imaging Behav       Date:  2020-02       Impact factor: 3.978

Review 5.  Magnetoencephalography for brain electrophysiology and imaging.

Authors:  Sylvain Baillet
Journal:  Nat Neurosci       Date:  2017-02-23       Impact factor: 24.884

6.  Distribution of brain iron accrual in adolescence: Evidence from cross-sectional and longitudinal analysis.

Authors:  Eric T Peterson; Dongjin Kwon; Beatriz Luna; Bart Larsen; Devin Prouty; Michael D De Bellis; James Voyvodic; Chunlei Liu; Wei Li; Kilian M Pohl; Edith V Sullivan; Adolf Pfefferbaum
Journal:  Hum Brain Mapp       Date:  2018-11-29       Impact factor: 5.038

Review 7.  The vast potential and bright future of neuroimaging.

Authors:  Max Wintermark; Rivka Colen; Christopher T Whitlow; Greg Zaharchuk
Journal:  Br J Radiol       Date:  2018-06-06       Impact factor: 3.039

8.  Eveningness and Later Sleep Timing Are Associated with Greater Risk for Alcohol and Marijuana Use in Adolescence: Initial Findings from the National Consortium on Alcohol and Neurodevelopment in Adolescence Study.

Authors:  Brant P Hasler; Peter L Franzen; Massimiliano de Zambotti; Devin Prouty; Sandra A Brown; Susan F Tapert; Adolf Pfefferbaum; Kilian M Pohl; Edith V Sullivan; Michael D De Bellis; Bonnie J Nagel; Fiona C Baker; Ian M Colrain; Duncan B Clark
Journal:  Alcohol Clin Exp Res       Date:  2017-05-29       Impact factor: 3.455

9.  The mediating role of cortical thickness and gray matter volume on sleep slow-wave activity during adolescence.

Authors:  Aimée Goldstone; Adrian R Willoughby; Massimiliano de Zambotti; Peter L Franzen; Dongjin Kwon; Kilian M Pohl; Adolf Pfefferbaum; Edith V Sullivan; Eva M Müller-Oehring; Devin E Prouty; Brant P Hasler; Duncan B Clark; Ian M Colrain; Fiona C Baker
Journal:  Brain Struct Funct       Date:  2017-09-14       Impact factor: 3.270

10.  "Cognitive, emotion control, and motor performance of adolescents in the NCANDA study: Contributions from alcohol consumption, age, sex, ethnicity, and family history of addiction": Correction to Sullivan et al. (2016).

Authors: 
Journal:  Neuropsychology       Date:  2016-08-08       Impact factor: 3.295

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