Literature DB >> 20822947

Enzyme dynamics point to stepwise conformational selection in catalysis.

Buyong Ma1, Ruth Nussinov.   

Abstract

Recent data increasingly reveal that conformational dynamics are indispensable to enzyme function throughout the catalytic cycle, in substrate recruiting, chemical transformation, and product release. Conformational transitions may involve conformational selection and induced fit, which can be viewed as a special case in the catalytic network. NMR, X-ray crystallography, single-molecule FRET, and simulations clearly demonstrate that the free enzyme dynamics already encompass all the conformations necessary for substrate binding, preorganization, transition-state stabilization, and product release. Conformational selection and substate population shift at each step of the catalytic turnover can accommodate enzyme specificity and efficiency. Within such a framework, entropy can have a larger role in conformational dynamics than in direct energy transfer in dynamically promoted catalysis.
Copyright © 2010 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20822947      PMCID: PMC6407632          DOI: 10.1016/j.cbpa.2010.08.012

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  83 in total

1.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

2.  Resolving the complex role of enzyme conformational dynamics in catalytic function.

Authors:  Urmi Doshi; Lauren C McGowan; Safieh Tork Ladani; Donald Hamelberg
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-26       Impact factor: 11.205

3.  Heteronuclear Adiabatic Relaxation Dispersion (HARD) for quantitative analysis of conformational dynamics in proteins.

Authors:  Nathaniel J Traaseth; Fa-An Chao; Larry R Masterson; Silvia Mangia; Michael Garwood; Shalom Michaeli; Burckhard Seelig; Gianluigi Veglia
Journal:  J Magn Reson       Date:  2012-04-06       Impact factor: 2.229

4.  Probing ground and excited states of phospholamban in model and native lipid membranes by magic angle spinning NMR spectroscopy.

Authors:  Martin Gustavsson; Nathaniel J Traaseth; Gianluigi Veglia
Journal:  Biochim Biophys Acta       Date:  2011-08-03

5.  Conformational selection and substrate binding regulate the monomer/dimer equilibrium of the C-terminal domain of Escherichia coli enzyme I.

Authors:  Vincenzo Venditti; G Marius Clore
Journal:  J Biol Chem       Date:  2012-06-21       Impact factor: 5.157

6.  Pulsed EPR characterization of HIV-1 protease conformational sampling and inhibitor-induced population shifts.

Authors:  Zhanglong Liu; Thomas M Casey; Mandy E Blackburn; Xi Huang; Linh Pham; Ian Mitchelle S de Vera; Jeffrey D Carter; Jamie L Kear-Scott; Angelo M Veloro; Luis Galiano; Gail E Fanucci
Journal:  Phys Chem Chem Phys       Date:  2016-02-17       Impact factor: 3.676

7.  Tyrosine latching of a regulatory gate affords allosteric control of aromatic amino acid biosynthesis.

Authors:  Penelope J Cross; Renwick C J Dobson; Mark L Patchett; Emily J Parker
Journal:  J Biol Chem       Date:  2011-01-30       Impact factor: 5.157

8.  NMR line shapes and multi-state binding equilibria.

Authors:  Evgenii L Kovrigin
Journal:  J Biomol NMR       Date:  2012-05-20       Impact factor: 2.835

9.  Perspective: pre-chemistry conformational changes in DNA polymerase mechanisms.

Authors:  Tamar Schlick; Karunesh Arora; William A Beard; Samuel H Wilson
Journal:  Theor Chem Acc       Date:  2012-11-23       Impact factor: 1.702

10.  Oxidative damage to epigenetically methylated sites affects DNA stability, dynamics and enzymatic demethylation.

Authors:  David R Gruber; Joanna J Toner; Heather L Miears; Andrey V Shernyukov; Alexey S Kiryutin; Alexander A Lomzov; Anton V Endutkin; Inga R Grin; Darya V Petrova; Maxim S Kupryushkin; Alexandra V Yurkovskaya; Eric C Johnson; Mark Okon; Elena G Bagryanskaya; Dmitry O Zharkov; Serge L Smirnov
Journal:  Nucleic Acids Res       Date:  2018-11-16       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.