Literature DB >> 31059206

Evolution of a dynamic molecular switch.

Susan S Taylor1,2, Hiruy S Meharena3, Alexandr P Kornev1.   

Abstract

Eukaryotic protein kinases (EPKs) regulate almost every biological process and have evolved to be dynamic molecular switches; this is in stark contrast to metabolic enzymes, which have evolved to be efficient catalysts. In particular, the highly conserved active site of every EPK is dynamically and transiently assembled by a process that is highly regulated and unique for every protein kinase. We review here the essential features of the kinase core, focusing on the conserved motifs and residues that are embedded in every kinase. We explore, in particular, how the hydrophobic core architecture specifically drives the dynamic assembly of the regulatory spine and consequently the organization of the active site where the γ-phosphate of ATP is positioned by a convergence of conserved motifs including a conserved regulatory triad for transfer to a protein substrate. In conclusion, we show how the flanking N- and C-terminal tails often classified as intrinsically disordered regions, as well as flanking domains, contribute in a highly kinase-specific manner to the regulation of the conserved kinase core. Understanding this process as well as how one kinase activates another remains as two of the big challenges for the kinase signaling community.
© 2019 IUBMB Life, 71(6):672-684, 2019. © 2019 International Union of Biochemistry and Molecular Biology.

Entities:  

Keywords:  glycogen; glycogen synthase; glycogenesis; glycogenin; phosphorylase; starch

Mesh:

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Year:  2019        PMID: 31059206      PMCID: PMC6690480          DOI: 10.1002/iub.2059

Source DB:  PubMed          Journal:  IUBMB Life        ISSN: 1521-6543            Impact factor:   3.885


  92 in total

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Authors:  Joseph A Adams
Journal:  Biochemistry       Date:  2003-01-28       Impact factor: 3.162

2.  Enzymic conversion of phosphorylase a to phosphorylase b.

Authors:  P J KELLER; G T CORI
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3.  Intramolecular C2 Domain-Mediated Autoinhibition of Protein Kinase C βII.

Authors:  Corina E Antal; Julia A Callender; Alexandr P Kornev; Susan S Taylor; Alexandra C Newton
Journal:  Cell Rep       Date:  2015-08-13       Impact factor: 9.423

4.  Surface comparison of active and inactive protein kinases identifies a conserved activation mechanism.

Authors:  Alexandr P Kornev; Nina M Haste; Susan S Taylor; Lynn F Ten Eyck
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-09       Impact factor: 11.205

5.  Importance of the A-helix of the catalytic subunit of cAMP-dependent protein kinase for stability and for orienting subdomains at the cleft interface.

Authors:  F W Herberg; B Zimmermann; M McGlone; S S Taylor
Journal:  Protein Sci       Date:  1997-03       Impact factor: 6.725

6.  An adenosine 3',5'-monophosphate-dependant protein kinase from rabbit skeletal muscle.

Authors:  D A Walsh; J P Perkins; E G Krebs
Journal:  J Biol Chem       Date:  1968-07-10       Impact factor: 5.157

Review 7.  Protein kinase C: perfectly balanced.

Authors:  Alexandra C Newton
Journal:  Crit Rev Biochem Mol Biol       Date:  2018-04       Impact factor: 8.250

8.  Viral src gene products are related to the catalytic chain of mammalian cAMP-dependent protein kinase.

Authors:  W C Barker; M O Dayhoff
Journal:  Proc Natl Acad Sci U S A       Date:  1982-05       Impact factor: 11.205

9.  Crystal structures of c-Src reveal features of its autoinhibitory mechanism.

Authors:  W Xu; A Doshi; M Lei; M J Eck; S C Harrison
Journal:  Mol Cell       Date:  1999-05       Impact factor: 17.970

10.  Calcium-dependent activation of a multifunctional protein kinase by membrane phospholipids.

Authors:  Y Takai; A Kishimoto; Y Iwasa; Y Kawahara; T Mori; Y Nishizuka
Journal:  J Biol Chem       Date:  1979-05-25       Impact factor: 5.157

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  11 in total

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Authors:  Neha Amatya; David Yin-Wei Lin; Amy H Andreotti
Journal:  Biochem Soc Trans       Date:  2019-08-08       Impact factor: 5.407

Review 2.  The pseudokinase domain in receptor guanylyl cyclases.

Authors:  Avipsa Bose; Sandhya S Visweswariah
Journal:  Methods Enzymol       Date:  2022-04-18       Impact factor: 1.682

3.  Conformation and dynamics of the kinase domain drive subcellular location and activation of LRRK2.

Authors:  Sven H Schmidt; Jui-Hung Weng; Phillip C Aoto; Daniela Boassa; Sebastian Mathea; Steve Silletti; Junru Hu; Maximilian Wallbott; Elizabeth A Komives; Stefan Knapp; Friedrich W Herberg; Susan S Taylor
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-08       Impact factor: 12.779

4.  Mycobacterium tuberculosis FasR senses long fatty acyl-CoA through a tunnel and a hydrophobic transmission spine.

Authors:  Julia Lara; Lautaro Diacovich; Felipe Trajtenberg; Nicole Larrieux; Emilio L Malchiodi; Marisa M Fernández; Gabriela Gago; Hugo Gramajo; Alejandro Buschiazzo
Journal:  Nat Commun       Date:  2020-07-24       Impact factor: 14.919

5.  The Evolution of Tau Phosphorylation and Interactions.

Authors:  Nataliya I Trushina; Lidia Bakota; Armen Y Mulkidjanian; Roland Brandt
Journal:  Front Aging Neurosci       Date:  2019-09-18       Impact factor: 5.750

6.  Dynamic energy correlation analysis of E. coli aspartokinase III and alteration of allosteric regulation by manipulating energy transduction pathways.

Authors:  Shizhen Wang; Chengwei Ma; An-Ping Zeng
Journal:  Eng Life Sci       Date:  2021-03-02       Impact factor: 2.678

7.  Kinase Function of Brassinosteroid Receptor Specified by Two Allosterically Regulated Subdomains.

Authors:  Khawar Ali; Wenjuan Li; Yaopeng Qin; Shanshan Wang; Lijie Feng; Qiang Wei; Qunwei Bai; Bowen Zheng; Guishuang Li; Hongyan Ren; Guang Wu
Journal:  Front Plant Sci       Date:  2022-01-13       Impact factor: 5.753

8.  Parallel Chemoselective Profiling for Mapping Protein Structure.

Authors:  Zachary E Potter; Ho-Tak Lau; Sujata Chakraborty; Linglan Fang; Miklos Guttman; Shao-En Ong; Douglas M Fowler; Dustin J Maly
Journal:  Cell Chem Biol       Date:  2020-07-09       Impact factor: 8.116

9.  Conformational states dynamically populated by a kinase determine its function.

Authors:  Tao Xie; Tamjeed Saleh; Paolo Rossi; Charalampos G Kalodimos
Journal:  Science       Date:  2020-10-01       Impact factor: 47.728

Review 10.  mTOR Regulation of AGC Kinases: New Twist to an Old Tail.

Authors:  Timothy R Baffi; Alexandra C Newton
Journal:  Mol Pharmacol       Date:  2021-06-21       Impact factor: 4.054

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