Literature DB >> 21456769

Soft magnetic tweezers: a proof of principle.

Francesco Mosconi1, Jean François Allemand, Vincent Croquette.   

Abstract

We present here the principle of soft magnetic tweezers which improve the traditional magnetic tweezers allowing the simultaneous application and measurement of an arbitrary torque to a deoxyribonucleic acid (DNA) molecule. They take advantage of a nonlinear coupling regime that appears when a fast rotating magnetic field is applied to a superparamagnetic bead immersed in a viscous fluid. In this work, we present the development of the technique and we compare it with other techniques capable of measuring the torque applied to the DNA molecule. In this proof of principle, we use standard electromagnets to achieve our experiments. Despite technical difficulties related to the present implementation of these electromagnets, the agreement of measurements with previous experiments is remarkable. Finally, we propose a simple way to modify the experimental design of electromagnets that should bring the performances of the device to a competitive level.

Mesh:

Substances:

Year:  2011        PMID: 21456769     DOI: 10.1063/1.3531959

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  20 in total

1.  Torque measurements reveal sequence-specific cooperative transitions in supercoiled DNA.

Authors:  Florian C Oberstrass; Louis E Fernandes; Zev Bryant
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

2.  Multifunctional magnetic rotator for micro and nanorheological studies.

Authors:  Alexander Tokarev; Alexey Aprelev; Mikhail N Zakharov; Guzeliya Korneva; Yury Gogotsi; Konstantin G Kornev
Journal:  Rev Sci Instrum       Date:  2012-06       Impact factor: 1.523

3.  Simple horizontal magnetic tweezers for micromanipulation of single DNA molecules and DNA-protein complexes.

Authors:  Christopher P McAndrew; Christopher Tyson; Joseph Zischkau; Patrick Mehl; Pamela L Tuma; Ian L Pegg; Abhijit Sarkar
Journal:  Biotechniques       Date:  2016-01-01       Impact factor: 1.993

4.  Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance.

Authors:  Maarten M van Oene; Seungkyu Ha; Tessa Jager; Mina Lee; Francesco Pedaci; Jan Lipfert; Nynke H Dekker
Journal:  Biophys J       Date:  2018-04-24       Impact factor: 4.033

5.  Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers.

Authors:  Franziska Kriegel; Niklas Ermann; Ruaridh Forbes; David Dulin; Nynke H Dekker; Jan Lipfert
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

Review 6.  Recent developments in single-molecule DNA mechanics.

Authors:  Zev Bryant; Florian C Oberstrass; Aakash Basu
Journal:  Curr Opin Struct Biol       Date:  2012-05-31       Impact factor: 6.809

7.  Torque correlation length and stochastic twist dynamics of DNA.

Authors:  Edward J Banigan; John F Marko
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2014-06-13

8.  DNA supercoiling during transcription.

Authors:  Jie Ma; Michelle D Wang
Journal:  Biophys Rev       Date:  2016-07-13

Review 9.  Torque measurement at the single-molecule level.

Authors:  Scott Forth; Maxim Y Sheinin; James Inman; Michelle D Wang
Journal:  Annu Rev Biophys       Date:  2013       Impact factor: 12.981

10.  Magnetic tweezers measurements of the nanomechanical stability of DNA against denaturation at various conditions of pH and ionic strength.

Authors:  Alessia Tempestini; Valeria Cassina; Doriano Brogioli; Roberto Ziano; Simona Erba; Roberto Giovannoni; Maria G Cerrito; Domenico Salerno; Francesco Mantegazza
Journal:  Nucleic Acids Res       Date:  2012-12-16       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.