Literature DB >> 21441351

A transcribed pseudogene of MYLK promotes cell proliferation.

Yoo Jeong Han1, Shwu Fan Ma, Gregory Yourek, Yoon-Dong Park, Joe G N Garcia.   

Abstract

Pseudogenes are considered nonfunctional genomic artifacts of catastrophic pathways. Recent evidence, however, indicates novel roles for pseudogenes as regulators of gene expression. We tested the functionality of myosin light chain kinase pseudogene (MYLKP1) in human cells and tissues by RT-PCR, promoter activity, and cell proliferation assays. MYLKP1 is partially duplicated from the original MYLK gene that encodes nonmuscle and smooth muscle myosin light chain kinase (smMLCK) isoforms and regulates cell contractility and cytokinesis. Despite strong homology with the smMLCK promoter (∼ 89.9%), the MYLKP1 promoter is minimally active in normal bronchial epithelial cells but highly active in lung adenocarcinoma cells. Moreover, MYLKP1 and smMLCK exhibit negatively correlated transcriptional patterns in normal and cancer cells with MYLKP1 strongly expressed in cancer cells and smMLCK highly expressed in non-neoplastic cells. For instance, expression of smMLCK decreased (19.5 ± 4.7 fold) in colon carcinoma tissues compared to normal colon tissues. Mechanistically, MYLKP1 overexpression inhibits smMLCK expression in cancer cells by decreasing RNA stability, leading to increased cell proliferation. These studies provide strong evidence for the functional involvement of pseudogenes in carcinogenesis and suggest MYLKP1 as a potential novel diagnostic or therapeutic target in human cancers.

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Year:  2011        PMID: 21441351      PMCID: PMC6137860          DOI: 10.1096/fj.10-177808

Source DB:  PubMed          Journal:  FASEB J        ISSN: 0892-6638            Impact factor:   5.191


  35 in total

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Review 2.  Pseudogenes: are they "junk" or functional DNA?

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Journal:  Annu Rev Genet       Date:  2003       Impact factor: 16.830

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Journal:  Genomics       Date:  1999-04-15       Impact factor: 5.736

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Journal:  J Neurosci       Date:  1999-09-15       Impact factor: 6.167

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Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

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Authors:  Sergei Korneev; Michael O'Shea
Journal:  Mol Biol Evol       Date:  2002-08       Impact factor: 16.240

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Journal:  Genomics       Date:  1995-10-10       Impact factor: 5.736

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Journal:  Am J Hypertens       Date:  2008-05-29       Impact factor: 2.689

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  41 in total

Review 1.  Long noncoding RNAs: a potent source of regulation in immunity and disease.

Authors:  Albert D Yu; Zichen Wang; Kevin V Morris
Journal:  Immunol Cell Biol       Date:  2015-03       Impact factor: 5.126

Review 2.  Long non-coding RNAs in cancer: implications for personalized therapy.

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Journal:  Cell Oncol (Dordr)       Date:  2014-08-12       Impact factor: 6.730

3.  A duplication of the Anti-Müllerian hormone gene is associated with genetic sex determination of different Oreochromis niloticus strains.

Authors:  A Y Curzon; A Shirak; L Dor; T Zak; A Perelberg; E Seroussi; M Ron
Journal:  Heredity (Edinb)       Date:  2020-07-09       Impact factor: 3.821

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Journal:  Mol Nutr Food Res       Date:  2017-01-03       Impact factor: 5.914

Review 5.  Regulatory mechanisms of long noncoding RNAs in vertebrate central nervous system development and function.

Authors:  J L Knauss; T Sun
Journal:  Neuroscience       Date:  2013-01-18       Impact factor: 3.590

6.  Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates.

Authors:  Chelsea J-T Ju; Zhuangtian Zhao; Wei Wang
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2016-07-14       Impact factor: 3.710

7.  dreamBase: DNA modification, RNA regulation and protein binding of expressed pseudogenes in human health and disease.

Authors:  Ling-Ling Zheng; Ke-Ren Zhou; Shun Liu; Ding-Yao Zhang; Ze-Lin Wang; Zhi-Rong Chen; Jian-Hua Yang; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

Review 8.  Pseudogene-expressed RNAs: a new frontier in cancers.

Authors:  Xuefei Shi; Fengqi Nie; Zhaoxia Wang; Ming Sun
Journal:  Tumour Biol       Date:  2015-12-10

9.  Not so pseudo anymore: pseudogenes as therapeutic targets.

Authors:  Thomas C Roberts; Kevin V Morris
Journal:  Pharmacogenomics       Date:  2013-12       Impact factor: 2.533

10.  Expressed pseudogenes in the transcriptional landscape of human cancers.

Authors:  Shanker Kalyana-Sundaram; Chandan Kumar-Sinha; Sunita Shankar; Dan R Robinson; Yi-Mi Wu; Xuhong Cao; Irfan A Asangani; Vishal Kothari; John R Prensner; Robert J Lonigro; Matthew K Iyer; Terrence Barrette; Achiraman Shanmugam; Saravana M Dhanasekaran; Nallasivam Palanisamy; Arul M Chinnaiyan
Journal:  Cell       Date:  2012-06-22       Impact factor: 41.582

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