Literature DB >> 21419783

Understanding microbial cooperation.

James A Damore1, Jeff Gore.   

Abstract

The field of microbial cooperation has grown enormously over the last decade, leading to improved experimental techniques and a growing awareness of collective behavior in microbes. Unfortunately, many of our theoretical tools and concepts for understanding cooperation fail to take into account the peculiarities of the microbial world, namely strong selection strengths, unique population structure, and non-linear dynamics. Worse yet, common verbal arguments are often far removed from the math involved, leading to confusion and mistakes. Here, we review the general mathematical forms of Price's equation, Hamilton's rule, and multilevel selection as they are applied to microbes and provide some intuition on these otherwise abstract formulas. However, these sometimes overly general equations can lack specificity and predictive power, ultimately forcing us to advocate for more direct modeling techniques.
Copyright © 2011 Elsevier Ltd. All rights reserved.

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Year:  2011        PMID: 21419783      PMCID: PMC3176967          DOI: 10.1016/j.jtbi.2011.03.008

Source DB:  PubMed          Journal:  J Theor Biol        ISSN: 0022-5193            Impact factor:   2.691


  72 in total

1.  Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors.

Authors:  Benjamin Kerr; Margaret A Riley; Marcus W Feldman; Brendan J M Bohannan
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

2.  Single-gene greenbeard effects in the social amoeba Dictyostelium discoideum.

Authors:  David C Queller; Eleonora Ponte; Salvatore Bozzaro; Joan E Strassmann
Journal:  Science       Date:  2003-01-03       Impact factor: 47.728

3.  Call for a return to rigour in models.

Authors:  Matthijs van Veelen; Julián García; Maurice W Sabelis; Martijn Egas
Journal:  Nature       Date:  2010-10-07       Impact factor: 49.962

4.  Local migration promotes competitive restraint in a host-pathogen 'tragedy of the commons'.

Authors:  Benjamin Kerr; Claudia Neuhauser; Brendan J M Bohannan; Antony M Dean
Journal:  Nature       Date:  2006-07-06       Impact factor: 49.962

5.  A simple rule for the evolution of cooperation on graphs and social networks.

Authors:  Hisashi Ohtsuki; Christoph Hauert; Erez Lieberman; Martin A Nowak
Journal:  Nature       Date:  2006-05-25       Impact factor: 49.962

6.  Selection and covariance.

Authors:  G R Price
Journal:  Nature       Date:  1970-08-01       Impact factor: 49.962

7.  Darwinian selection and "altruism".

Authors:  L L Cavalli-Sforza; M W Feldman
Journal:  Theor Popul Biol       Date:  1978-10       Impact factor: 1.570

8.  A mixture of "cheats" and "co-operators" can enable maximal group benefit.

Authors:  R Craig MaClean; Ayari Fuentes-Hernandez; Duncan Greig; Laurence D Hurst; Ivana Gudelj
Journal:  PLoS Biol       Date:  2010-09-14       Impact factor: 8.029

9.  The Prisoner's Dilemma and polymorphism in yeast SUC genes.

Authors:  Duncan Greig; Michael Travisano
Journal:  Proc Biol Sci       Date:  2004-02-07       Impact factor: 5.349

Review 10.  Bacterial competition: surviving and thriving in the microbial jungle.

Authors:  Michael E Hibbing; Clay Fuqua; Matthew R Parsek; S Brook Peterson
Journal:  Nat Rev Microbiol       Date:  2010-01       Impact factor: 60.633

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  44 in total

1.  Primary and Secondary Succession Mediate the Accumulation of Biogenic Amines during Industrial Semidry Chinese Rice Wine Fermentation.

Authors:  Yi Luo; Yang Huang; Rui-Xian Xu; Bin Qian; Jing-Wen Zhou; Xiao-le Xia
Journal:  Appl Environ Microbiol       Date:  2020-08-18       Impact factor: 4.792

2.  Simulations reveal challenges to artificial community selection and possible strategies for success.

Authors:  Li Xie; Alex E Yuan; Wenying Shou
Journal:  PLoS Biol       Date:  2019-06-25       Impact factor: 8.029

3.  Fitness and stability of obligate cross-feeding interactions that emerge upon gene loss in bacteria.

Authors:  Samay Pande; Holger Merker; Katrin Bohl; Michael Reichelt; Stefan Schuster; Luís F de Figueiredo; Christoph Kaleta; Christian Kost
Journal:  ISME J       Date:  2013-11-28       Impact factor: 10.302

4.  Limitations of inclusive fitness.

Authors:  Benjamin Allen; Martin A Nowak; Edward O Wilson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-25       Impact factor: 11.205

5.  Core principles of bacterial autoinducer systems.

Authors:  Burkhard A Hense; Martin Schuster
Journal:  Microbiol Mol Biol Rev       Date:  2015-03       Impact factor: 11.056

6.  Public good dynamics drive evolution of iron acquisition strategies in natural bacterioplankton populations.

Authors:  Otto X Cordero; Laure-Anne Ventouras; Edward F DeLong; Martin F Polz
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

Review 7.  Cutting through the complexity of cell collectives.

Authors:  Carey D Nadell; Vanni Bucci; Knut Drescher; Simon A Levin; Bonnie L Bassler; João B Xavier
Journal:  Proc Biol Sci       Date:  2013-01-30       Impact factor: 5.349

8.  Range expansion promotes cooperation in an experimental microbial metapopulation.

Authors:  Manoshi Sen Datta; Kirill S Korolev; Ivana Cvijovic; Carmel Dudley; Jeff Gore
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-08       Impact factor: 11.205

9.  Evolutionary shift dynamics on a cycle.

Authors:  Benjamin Allen; Martin A Nowak
Journal:  J Theor Biol       Date:  2012-07-16       Impact factor: 2.691

Review 10.  Bacteria and game theory: the rise and fall of cooperation in spatially heterogeneous environments.

Authors:  Guillaume Lambert; Saurabh Vyawahare; Robert H Austin
Journal:  Interface Focus       Date:  2014-08-06       Impact factor: 3.906

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