Literature DB >> 21414486

Pattern, growth, and control.

Arthur D Lander1.   

Abstract

Systems biology seeks not only to discover the machinery of life but to understand how such machinery is used for control, i.e., for regulation that achieves or maintains a desired, useful end. This sort of goal-directed, engineering-centered approach also has deep historical roots in developmental biology. Not surprisingly, developmental biology is currently enjoying an influx of ideas and methods from systems biology. This Review highlights current efforts to elucidate design principles underlying the engineering objectives of robustness, precision, and scaling as they relate to the developmental control of growth and pattern formation. Examples from vertebrate and invertebrate development are used to illustrate general lessons, including the value of integral feedback in achieving set-point control; the usefulness of self-organizing behavior; the importance of recognizing and appropriately handling noise; and the absence of "free lunch." By illuminating such principles, systems biology is helping to create a functional framework within which to make sense of the mechanistic complexity of organismal development.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Mesh:

Year:  2011        PMID: 21414486      PMCID: PMC3128888          DOI: 10.1016/j.cell.2011.03.009

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  123 in total

Review 1.  Chalones: from aqueous extracts to oligopeptides.

Authors:  Kjell Elgjo; Karl L Reichelt
Journal:  Cell Cycle       Date:  2004-09-15       Impact factor: 4.534

2.  Dynamic filopodia transmit intermittent Delta-Notch signaling to drive pattern refinement during lateral inhibition.

Authors:  Michael Cohen; Marios Georgiou; Nicola L Stevenson; Mark Miodownik; Buzz Baum
Journal:  Dev Cell       Date:  2010-07-20       Impact factor: 12.270

3.  Positional information and patterning revisited.

Authors:  Lewis Wolpert
Journal:  J Theor Biol       Date:  2010-10-31       Impact factor: 2.691

4.  Turing pattern with proportion preservation.

Authors:  Shuji Ishihara; Kunihiko Kaneko
Journal:  J Theor Biol       Date:  2005-08-15       Impact factor: 2.691

5.  Antagonistic growth regulation by Dpp and Fat drives uniform cell proliferation.

Authors:  Gerald Schwank; Gerardo Tauriello; Ryohei Yagi; Elizabeth Kranz; Petros Koumoutsakos; Konrad Basler
Journal:  Dev Cell       Date:  2011-01-18       Impact factor: 12.270

6.  Size-normalized Robustness of Dpp Gradient in Drosophila Wing Imaginal Disc.

Authors:  A D Lander; Q Nie; B Vargas; F Y M Wan
Journal:  J Mech Mater Struct       Date:  2011-01-01       Impact factor: 1.210

7.  Boundaries in the Drosophila wing imaginal disc organize vein-specific genetic programs.

Authors:  B Biehs; M A Sturtevant; E Bier
Journal:  Development       Date:  1998-11       Impact factor: 6.868

8.  Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation.

Authors:  Patrik Sahlin; Pontus Melke; Henrik Jönsson
Journal:  BMC Syst Biol       Date:  2011-01-05

Review 9.  Making a grade: Sonic Hedgehog signalling and the control of neural cell fate.

Authors:  James Briscoe
Journal:  EMBO J       Date:  2009-02-05       Impact factor: 11.598

10.  Noise-driven stem cell and progenitor population dynamics.

Authors:  Martin Hoffmann; Hannah H Chang; Sui Huang; Donald E Ingber; Markus Loeffler; Joerg Galle
Journal:  PLoS One       Date:  2008-08-13       Impact factor: 3.240

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  85 in total

Review 1.  Systems control of BMP morphogen flow in vertebrate embryos.

Authors:  Jean-Louis Plouhinec; Lise Zakin; Edward M De Robertis
Journal:  Curr Opin Genet Dev       Date:  2011-09-19       Impact factor: 5.578

2.  Multiview light-sheet microscope for rapid in toto imaging.

Authors:  Uros Krzic; Stefan Gunther; Timothy E Saunders; Sebastian J Streichan; Lars Hufnagel
Journal:  Nat Methods       Date:  2012-06-03       Impact factor: 28.547

3.  Limits to the precision of gradient sensing with spatial communication and temporal integration.

Authors:  Andrew Mugler; Andre Levchenko; Ilya Nemenman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-20       Impact factor: 11.205

4.  Ultrasensitivity by molecular titration in spatially propagating enzymatic reactions.

Authors:  Sergey N Semenov; Albert J Markvoort; Wouter B L Gevers; Aigars Piruska; Tom F A de Greef; Wilhelm T S Huck
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

5.  Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria.

Authors:  Yangxiaolu Cao; Marc D Ryser; Stephen Payne; Bochong Li; Christopher V Rao; Lingchong You
Journal:  Cell       Date:  2016-04-21       Impact factor: 41.582

Review 6.  Making and breaking symmetry in development, growth and disease.

Authors:  Daniel T Grimes
Journal:  Development       Date:  2019-08-15       Impact factor: 6.868

7.  A bio-inspired spatial patterning circuit.

Authors:  Kai-Yuan Chen; Danial J Joe; James B Shealy; Bruce R Land; Xiling Shen
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2014

8.  Converting cancer therapies into cures: lessons from infectious diseases.

Authors:  Michael S Glickman; Charles L Sawyers
Journal:  Cell       Date:  2012-03-16       Impact factor: 41.582

9.  The ecological basis of morphogenesis: branching patterns in swarming colonies of bacteria.

Authors:  Pan Deng; Laura de Vargas Roditi; Dave van Ditmarsch; Joao B Xavier
Journal:  New J Phys       Date:  2014-01       Impact factor: 3.729

10.  Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos.

Authors:  David Cheung; Cecelia Miles; Martin Kreitman; Jun Ma
Journal:  Development       Date:  2013-11-27       Impact factor: 6.868

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