Literature DB >> 21414475

Network news: innovations in 21st century systems biology.

Adam P Arkin1, David V Schaffer.   

Abstract

A decade ago, seminal perspectives and papers set a strong vision for the field of systems biology, and a number of these themes have flourished. Here, we describe key technologies and insights that have elucidated the evolution, architecture, and function of cellular networks, ultimately leading to the first predictive genome-scale regulatory and metabolic models of organisms. Can systems approaches bridge the gap between correlative analysis and mechanistic insights?
Copyright © 2011 Elsevier Inc. All rights reserved.

Mesh:

Year:  2011        PMID: 21414475     DOI: 10.1016/j.cell.2011.03.008

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  17 in total

Review 1.  Models of signalling networks - what cell biologists can gain from them and give to them.

Authors:  Kevin A Janes; Douglas A Lauffenburger
Journal:  J Cell Sci       Date:  2013-05-01       Impact factor: 5.285

Review 2.  Methods, Tools and Current Perspectives in Proteogenomics.

Authors:  Kelly V Ruggles; Karsten Krug; Xiaojing Wang; Karl R Clauser; Jing Wang; Samuel H Payne; David Fenyö; Bing Zhang; D R Mani
Journal:  Mol Cell Proteomics       Date:  2017-04-29       Impact factor: 5.911

Review 3.  Proteomic and interactomic insights into the molecular basis of cell functional diversity.

Authors:  Isabell Bludau; Ruedi Aebersold
Journal:  Nat Rev Mol Cell Biol       Date:  2020-03-31       Impact factor: 94.444

Review 4.  An engineering design approach to systems biology.

Authors:  Kevin A Janes; Preethi L Chandran; Roseanne M Ford; Matthew J Lazzara; Jason A Papin; Shayn M Peirce; Jeffrey J Saucerman; Douglas A Lauffenburger
Journal:  Integr Biol (Camb)       Date:  2017-07-17       Impact factor: 2.192

Review 5.  Insights into the Role of Chemokines, Damage-Associated Molecular Patterns, and Lymphocyte-Derived Mediators from Computational Models of Trauma-Induced Inflammation.

Authors:  Rami A Namas; Qi Mi; Rajaie Namas; Khalid Almahmoud; Akram M Zaaqoq; Othman Abdul-Malak; Nabil Azhar; Judy Day; Andrew Abboud; Ruben Zamora; Timothy R Billiar; Yoram Vodovotz
Journal:  Antioxid Redox Signal       Date:  2015-12-10       Impact factor: 8.401

Review 6.  Computational modelling of the inflammatory response in trauma, sepsis and wound healing: implications for modelling resilience.

Authors:  Yoram Vodovotz
Journal:  Interface Focus       Date:  2014-10-06       Impact factor: 3.906

Review 7.  Dynamics of TGF-β/Smad signaling.

Authors:  Zhike Zi; Douglas A Chapnick; Xuedong Liu
Journal:  FEBS Lett       Date:  2012-04-09       Impact factor: 4.124

8.  Understanding system dynamics of an adaptive enzyme network from globally profiled kinetic parameters.

Authors:  Austin W T Chiang; Wei-Chung Liu; Pep Charusanti; Ming-Jing Hwang
Journal:  BMC Syst Biol       Date:  2014-01-15

9.  Reverse engineering cellular networks with information theoretic methods.

Authors:  Alejandro F Villaverde; John Ross; Julio R Banga
Journal:  Cells       Date:  2013-05-10       Impact factor: 6.600

Review 10.  Getting to the edge: protein dynamical networks as a new frontier in plant-microbe interactions.

Authors:  Cassandra C Garbutt; Purushotham V Bangalore; Pegah Kannar; M S Mukhtar
Journal:  Front Plant Sci       Date:  2014-06-30       Impact factor: 5.753

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