Literature DB >> 21405721

Calculations of the second virial coefficients of protein solutions with an extended fast multipole method.

Bongkeun Kim1, Xueyu Song.   

Abstract

The osmotic second virial coefficients B(2) are directly related to the solubility of protein molecules in electrolyte solutions and can be useful to narrow down the search parameter space of protein crystallization conditions. Using a residue level model of protein-protein interaction in electrolyte solutions B(2) of bovine pancreatic trypsin inhibitor and lysozyme in various solution conditions such as salt concentration, pH and temperature are calculated using an extended fast multipole method in combination with the boundary element formulation. Overall, the calculated B(2) are well correlated with the experimental observations for various solution conditions. In combination with our previous work on the binding affinity calculations it is reasonable to expect that our residue level model can be used as a reliable model to describe protein-protein interaction in solutions.

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Year:  2011        PMID: 21405721     DOI: 10.1103/PhysRevE.83.011915

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  4 in total

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Journal:  J Phys Chem B       Date:  2019-09-19       Impact factor: 2.991

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Journal:  Phys Rev E       Date:  2017-09-25       Impact factor: 2.529

4.  Quantifying Protein-Protein Interactions in Molecular Simulations.

Authors:  Alfredo Jost Lopez; Patrick K Quoika; Max Linke; Gerhard Hummer; Jürgen Köfinger
Journal:  J Phys Chem B       Date:  2020-06-02       Impact factor: 2.991

  4 in total

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