Literature DB >> 24559992

Self crowding of globular proteins studied by small-angle x-ray scattering.

David P Goldenberg1, Brian Argyle2.   

Abstract

Small-angle x-ray scattering (SAXS) was used to study the behavior of equine metmyoglobin (Mb) and bovine pancreatic trypsin inhibitor (BPTI) at concentrations up to 0.4 and 0.15 g/mL, respectively, in solutions also containing 50% D2O and 1 M urea. For both proteins, significant effects because of interference between x-rays scattered by different molecules (interparticle interference) were observed, indicating nonideal behavior at high concentrations. The experimental data were analyzed by comparison of the observed scattering profiles with those predicted by crystal structures of the proteins and a hard-sphere fluid model used to represent steric exclusion effects. The Mb scattering data were well fit by the hard-sphere model using a sphere radius of 18 Å, only slightly smaller than that estimated from the three-dimensional structure (20 Å). In contrast, the scattering profiles for BPTI in phosphate buffer displayed substantially less pronounced interparticle interference than predicted by the hard-sphere model and the radius estimated from the known structure of the protein (15 Å). Replacing the phosphate buffer with 3-(N-morpolino)propane sulfonic acid (MOPS) led to increased interparticle interference, consistent with a larger effective radius and suggesting that phosphate ions may mediate attractive intermolecular interactions, as observed in some BPTI crystal structures, without the formation of stable oligomers. The scattering data were also used to estimate second virial coefficients for the two proteins: 2.0 ×10(-4) cm(3)mol/g(2) for Mb in phosphate buffer, 1.6 ×10(-4) cm(3)mol/g(2) for BPTI in phosphate buffer and 9.2 ×10(-4) cm(3)mol/g(2) for BPTI in MOPS. The results indicate that the behavior of Mb, which is nearly isoelectric under the conditions used, is well described by the hard-sphere model, but that of BPTI is considerably more complex and is likely influenced by both repulsive and attractive electrostatic interactions. The hard-sphere model may be a generally useful tool for the analysis of small-angle scattering data from concentrated macromolecular solutions.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 24559992      PMCID: PMC3944889          DOI: 10.1016/j.bpj.2013.12.004

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  35 in total

Review 1.  New strategies for protein crystal growth.

Authors:  J M Wiencek
Journal:  Annu Rev Biomed Eng       Date:  1999       Impact factor: 9.590

2.  Interest of the normalized second virial coefficient and interaction potentials for crystallizing large macromolecules.

Authors:  F Bonneté; D Vivarès
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-26

3.  Molecular origins of osmotic second virial coefficients of proteins.

Authors:  B L Neal; D Asthagiri; A M Lenhoff
Journal:  Biophys J       Date:  1998-11       Impact factor: 4.033

4.  Calculations of the second virial coefficients of protein solutions with an extended fast multipole method.

Authors:  Bongkeun Kim; Xueyu Song
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2011-01-27

5.  Effects of macromolecular crowding on an intrinsically disordered protein characterized by small-angle neutron scattering with contrast matching.

Authors:  Daniel Johansen; Cy M J Jeffries; Boualem Hammouda; Jill Trewhella; David P Goldenberg
Journal:  Biophys J       Date:  2011-02-16       Impact factor: 4.033

6.  Analysis of non-ideal behavior in concentrated hemoglobin solutions.

Authors:  P D Ross; A P Minton
Journal:  J Mol Biol       Date:  1977-05-25       Impact factor: 5.469

7.  Structure of form III crystals of bovine pancreatic trypsin inhibitor.

Authors:  A Wlodawer; J Nachman; G L Gilliland; W Gallagher; C Woodward
Journal:  J Mol Biol       Date:  1987-12-05       Impact factor: 5.469

8.  A molecular model for the dependence of the osmotic pressure of bovine serum albumin upon concentration and pH.

Authors:  A P Minton
Journal:  Biophys Chem       Date:  1995-12       Impact factor: 2.352

9.  Protein-protein interactions in ovalbumin solutions studied by small-angle scattering: effect of ionic strength and the chemical nature of cations.

Authors:  Luca Ianeselli; Fajun Zhang; Maximilian W A Skoda; Robert M J Jacobs; Richard A Martin; Shirley Callow; Sylvain Prévost; Frank Schreiber
Journal:  J Phys Chem B       Date:  2010-03-25       Impact factor: 2.991

10.  Nonequivalence of second virial coefficients from sedimentation equilibrium and static light scattering studies of protein solutions.

Authors:  Donald J Winzor; Marcin Deszczynski; Stephen E Harding; Peter R Wills
Journal:  Biophys Chem       Date:  2007-03-07       Impact factor: 2.352

View more
  9 in total

1.  SAXS/SANS probe of intermolecular interactions in concentrated protein solutions.

Authors:  Huan-Xiang Zhou; Osman Bilsel
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

2.  Measurement of protein size in concentrated solutions by small angle X-ray scattering.

Authors:  Jun Liu; Zhihong Li; Yanru Wei; Wenjia Wang; Bing Wang; Hongli Liang; Yuxi Gao
Journal:  Protein Sci       Date:  2016-06-16       Impact factor: 6.725

3.  Minimal effects of macromolecular crowding on an intrinsically disordered protein: a small-angle neutron scattering study.

Authors:  David P Goldenberg; Brian Argyle
Journal:  Biophys J       Date:  2014-02-18       Impact factor: 4.033

4.  Further Development of the FFT-based Method for Atomistic Modeling of Protein Folding and Binding under Crowding: Optimization of Accuracy and Speed.

Authors:  Sanbo Qin; Huan-Xiang Zhou
Journal:  J Chem Theory Comput       Date:  2014-05-06       Impact factor: 6.006

5.  SEC-SANS: size exclusion chromatography combined in situ with small-angle neutron scattering.

Authors:  Ashley Jordan; Mark Jacques; Catherine Merrick; Juliette Devos; V Trevor Forsyth; Lionel Porcar; Anne Martel
Journal:  J Appl Crystallogr       Date:  2016-11-02       Impact factor: 3.304

6.  Transfer Free Energies of Test Proteins Into Crowded Protein Solutions Have Simple Dependence on Crowder Concentration.

Authors:  Valery Nguemaha; Sanbo Qin; Huan-Xiang Zhou
Journal:  Front Mol Biosci       Date:  2019-05-29

7.  SAXS structure of homodimeric oxyHemoglobin III from bivalve Lucina pectinata.

Authors:  Darya Marchany-Rivera; Rafael A Estremera-Andújar; Carlos Nieves-Marrero; Carlos R Ruiz-Martínez; William Bauer; Juan López-Garriga
Journal:  Biopolymers       Date:  2021-04-01       Impact factor: 2.240

8.  The structure and DNA-binding properties of Mgm101 from a yeast with a linear mitochondrial genome.

Authors:  Vladimír Pevala; Dominika Truban; Jacob A Bauer; Július Košťan; Nina Kunová; Jana Bellová; Marlene Brandstetter; Victoria Marini; Lumír Krejčí; Ľubomír Tomáška; Jozef Nosek; Eva Kutejová
Journal:  Nucleic Acids Res       Date:  2016-01-06       Impact factor: 16.971

9.  Tracing whale myoglobin evolution by resurrecting ancient proteins.

Authors:  Yasuhiro Isogai; Hiroshi Imamura; Setsu Nakae; Tomonari Sumi; Ken-Ichi Takahashi; Taro Nakagawa; Antonio Tsuneshige; Tsuyoshi Shirai
Journal:  Sci Rep       Date:  2018-11-15       Impact factor: 4.379

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.