Literature DB >> 21404180

Structure and functions of powerful transactivators: VP16, MyoD and FoxA.

Hiroyuki Hirai1, Tetsuya Tani, Nobuaki Kikyo.   

Abstract

Induced pluripotent stem cell (iPSC) technology is a promising approach for converting one type of a differentiated cell into another type of differentiated cell through a pluripotent state as an intermediate step. Recent studies, however, indicate the possibility of directly converting one cell type to another without going through a pluripotent state. This direct reprogramming approach is dependent on a combination of highly potent transcription factors for cell-type conversion, presumably skipping more physiological and multi-step differentiation processes. A trial-and-error strategy is commonly used to screen many candidate transcription factors to identify the correct combination of factors. We speculate, however, that a better understanding of the functional mechanisms of exemplary transcriptional activators will facilitate the identification of novel factor combinations capable of direct reprogramming. The purpose of this review is to critically examine the literature on three highly potent transcriptional activators: the herpes virus protein, VP16; the master regulator of skeletal muscle differentiation, MyoD and the "pioneer" factor for hepatogenesis, FoxA. We discuss the roles of their functional protein domains, interacting partners and chromatin remodeling mechanisms during gene activation to understand how these factors open the chromatin of inactive genes and reset the transcriptional pattern during cell type conversion.

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Year:  2010        PMID: 21404180      PMCID: PMC3419751          DOI: 10.1387/ijdb.103194hh

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.203


  88 in total

1.  Two domains of MyoD mediate transcriptional activation of genes in repressive chromatin: a mechanism for lineage determination in myogenesis.

Authors:  A N Gerber; T R Klesert; D A Bergstrom; S J Tapscott
Journal:  Genes Dev       Date:  1997-02-15       Impact factor: 11.361

2.  Hepatocyte nuclear factor 3 relieves chromatin-mediated repression of the alpha-fetoprotein gene.

Authors:  A J Crowe; L Sang; K K Li; K C Lee; B T Spear; M C Barton
Journal:  J Biol Chem       Date:  1999-08-27       Impact factor: 5.157

3.  Intramolecular regulation of MyoD activation domain conformation and function.

Authors:  J Huang; H Weintraub; L Kedes
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

4.  Binding of the winged-helix transcription factor HNF3 to a linker histone site on the nucleosome.

Authors:  L A Cirillo; C E McPherson; P Bossard; K Stevens; S Cherian; E Y Shim; K L Clark; S K Burley; K S Zaret
Journal:  EMBO J       Date:  1998-01-02       Impact factor: 11.598

Review 5.  Viral transactivating proteins.

Authors:  J Flint; T Shenk
Journal:  Annu Rev Genet       Date:  1997       Impact factor: 16.830

6.  Induced alpha helix in the VP16 activation domain upon binding to a human TAF.

Authors:  M Uesugi; O Nyanguile; H Lu; A J Levine; G L Verdine
Journal:  Science       Date:  1997-08-29       Impact factor: 47.728

7.  Identity between TRAP and SMCC complexes indicates novel pathways for the function of nuclear receptors and diverse mammalian activators.

Authors:  M Ito; C X Yuan; S Malik; W Gu; J D Fondell; S Yamamura; Z Y Fu; X Zhang; J Qin; R G Roeder
Journal:  Mol Cell       Date:  1999-03       Impact factor: 17.970

8.  Transcriptional activators direct histone acetyltransferase complexes to nucleosomes.

Authors:  R T Utley; K Ikeda; P A Grant; J Côté; D J Steger; A Eberharter; S John; J L Workman
Journal:  Nature       Date:  1998-07-30       Impact factor: 49.962

9.  Large-scale chromatin unfolding and remodeling induced by VP16 acidic activation domain.

Authors:  T Tumbar; G Sudlow; A S Belmont
Journal:  J Cell Biol       Date:  1999-06-28       Impact factor: 10.539

10.  GATA transcription factors as potentiators of gut endoderm differentiation.

Authors:  P Bossard; K S Zaret
Journal:  Development       Date:  1998-12       Impact factor: 6.868

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  32 in total

1.  Krüppel-like Factor 7 engineered for transcriptional activation promotes axon regeneration in the adult corticospinal tract.

Authors:  Murray G Blackmore; Zimei Wang; Jessica K Lerch; Dario Motti; Yi Ping Zhang; Christopher B Shields; Jae K Lee; Jeffrey L Goldberg; Vance P Lemmon; John L Bixby
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-23       Impact factor: 11.205

2.  Accelerated direct reprogramming of fibroblasts into cardiomyocyte-like cells with the MyoD transactivation domain.

Authors:  Hiroyuki Hirai; Nobuko Katoku-Kikyo; Susan A Keirstead; Nobuaki Kikyo
Journal:  Cardiovasc Res       Date:  2013-06-20       Impact factor: 10.787

Review 3.  Discovery and progress of direct cardiac reprogramming.

Authors:  Hidenori Kojima; Masaki Ieda
Journal:  Cell Mol Life Sci       Date:  2017-02-14       Impact factor: 9.261

4.  Radical acceleration of nuclear reprogramming by chromatin remodeling with the transactivation domain of MyoD.

Authors:  Hiroyuki Hirai; Tetsuya Tani; Nobuko Katoku-Kikyo; Steven Kellner; Peter Karian; Meri Firpo; Nobuaki Kikyo
Journal:  Stem Cells       Date:  2011-09       Impact factor: 6.277

Review 5.  An Epigenetic Journey: Epstein-Barr Virus Transcribes Chromatinized and Subsequently Unchromatinized Templates during Its Lytic Cycle.

Authors:  Adityarup Chakravorty; Bill Sugden; Eric C Johannsen
Journal:  J Virol       Date:  2019-04-03       Impact factor: 5.103

6.  Hyperactivated Stat3 boosts axon regeneration in the CNS.

Authors:  Saloni T Mehta; Xueting Luo; Kevin K Park; John L Bixby; Vance P Lemmon
Journal:  Exp Neurol       Date:  2016-04-06       Impact factor: 5.330

Review 7.  Targeting cancer epigenetics with CRISPR-dCAS9: Principles and prospects.

Authors:  Mohammad Mijanur Rahman; Trygve O Tollefsbol
Journal:  Methods       Date:  2020-04-18       Impact factor: 3.608

Review 8.  Direct reprogramming as a route to cardiac repair.

Authors:  Glynnis A Garry; Rhonda Bassel-Duby; Eric N Olson
Journal:  Semin Cell Dev Biol       Date:  2021-07-08       Impact factor: 7.727

9.  Interaction of gamma-herpesvirus genome maintenance proteins with cellular chromatin.

Authors:  Nouman Mughal; Giuseppe Coppotelli; Simone Callegari; Stefano Gastaldello; Maria G Masucci
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

10.  The Epstein-Barr virus nuclear antigen-1 reprograms transcription by mimicry of high mobility group A proteins.

Authors:  Giuseppe Coppotelli; Nouman Mughal; Simone Callegari; Ramakrishna Sompallae; Laia Caja; Martijn S Luijsterburg; Nico P Dantuma; Aristidis Moustakas; Maria G Masucci
Journal:  Nucleic Acids Res       Date:  2013-01-28       Impact factor: 16.971

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