| Literature DB >> 21401968 |
Bernd Nilius1, Grzegorz Owsianik.
Abstract
The transient receptor potential (TRP) multigene superfamily encodes integral membrane proteins that function as ion channels. Members of this family are conserved in yeast, invertebrates and vertebrates. The TRP family is subdivided into seven subfamilies: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin), TRPP (polycystin), TRPML (mucolipin), TRPA (ankyrin) and TRPN (NOMPC-like); the latter is found only in invertebrates and fish. TRP ion channels are widely expressed in many different tissues and cell types, where they are involved in diverse physiological processes, such as sensation of different stimuli or ion homeostasis. Most TRPs are non-selective cation channels, only few are highly Ca2+ selective, some are even permeable for highly hydrated Mg2+ ions. This channel family shows a variety of gating mechanisms, with modes of activation ranging from ligand binding, voltage and changes in temperature to covalent modifications of nucleophilic residues. Activated TRP channels cause depolarization of the cellular membrane, which in turn activates voltage-dependent ion channels, resulting in a change of intracellular Ca2+ concentration; they serve as gatekeeper for transcellular transport of several cations (such as Ca2+ and Mg2+), and are required for the function of intracellular organelles (such as endosomes and lysosomes). Because of their function as intracellular Ca2+ release channels, they have an important regulatory role in cellular organelles. Mutations in several TRP genes have been implicated in diverse pathological states, including neurodegenerative disorders, skeletal dysplasia, kidney disorders and pain, and ongoing research may help find new therapies for treatments of related diseases.Entities:
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Year: 2011 PMID: 21401968 PMCID: PMC3129667 DOI: 10.1186/gb-2011-12-3-218
Source DB: PubMed Journal: Genome Biol ISSN: 1474-7596 Impact factor: 13.583
The TRP channel familya
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| TRPC | 3 | 3 | 8 | 8 | 8 | 7 | 6 |
| TRPV | 3 | 5 | 2 | 4 | 4 | 6 | 6 |
| TRPM | 1 | 4 | 2 | 6 | 6 | 8 | 8 |
| TRPA | 4 | 2 | 4 | 1 | 2 | 1 | 1 |
| TRPN | 1 | 1 | 1 | - | 1 | - | - |
| TRPML | 4 | 1 | 9 | 2 | 2 | 3 | 3 |
| TRPP | 1 | 1 | 1 | 4 | 4 | 3 | 3 |
| Total | 17 | 17 | 27 | 25 | 27 | 28 | 27 |
aTRP channels in the fruit fly Drosophila melanogaster, the worm Caenorhabditis elegans, the sea squirt Ciona intestinalis, the puffer fish (Seifuku, Fugu rubripes), the zebrafish (Danio rerio), mouse and human. The numbers correspond to proteins with distinct channel properties within each subfamily [104-106]. For more detailed information concerning properties of TRP channels, please refer to the IUPHAR database [103]. bOthers report about 60 TRPs in zebrafish, 30 in sea squirts and 24 in C. elegans.
Figure 1A phylogenetic tree of human TRP channels. Sequence homology analyses show that all TRP channels fall into seven subfamilies that comprise proteins with distinct channel properties. Because TRPC2 is a pseudogene in human and TRPNs are not present in mammals, we used mouse TRPC2 (ENSMUSP00000102562) and fish TRPN1 (ENSDARP00000093955) to show relations between all subfamilies. Protein sequences were aligned using ClustalW2 at the EMBL-EBI server. Phylogenetic distances were calculated using PAM matrix and the unrooted tree was obtained using NJplot [102]. The TRP subfamilies are represented by different colors. The scale bar represents 0.2 substitutions. Ensembl protein IDs for human protein sequences used in the analysis are as follows: TRPM1, ENSP00000380897; TRPM2, ENSP00000381023; TRPM3, ENSP00000350140; TRPM4, ENSP00000252826; TRPM5, ENSP00000387965; TRPM6, ENSP00000354006; TRPM7, ENSP00000320239; TRPM8, ENSP00000323926; TRPV1, ENSP00000174621; TRPV2, ENSP00000342222; TRPV3, ENSP00000301365; TRPV4, ENSP00000261740; TRPV5, ENSP00000265310; TRPV6, ENSP00000352358; TRPC1, ENSP00000273482; TRPC3, ENSP00000368966; TRPC4, ENSP00000369003; TRPC5, ENSP00000262839; TRPC6, ENSP00000340913; TRPC7, ENSP00000426070; TRPML1, ENSP00000264079; TRPML2, ENSP00000359640; TRPML3, ENSP00000304843; TRPP2, ENSP00000237596; TRPP3, ENSP00000325296; TRPP5, ENSP00000290431; TRPA1, ENSP00000262209.
Figure 2Predicted structural topology of TRP channels. (a) All channels contain six transmembrane segments (S1 to S6) with a putative pore region (P) between S5 and S6. Amino and carboxyl termini are variable in length and contain different sets of domains. (b) Distribution of domains in selected human TRP channels [103]. The number and composition of domains vary between different TRP channels and are only partially preserved within members of the same subfamily. aa, amino acids; CaM, calmodulin; EF hand, helix-loop-helix Ca2+ binding motif; PH, pleckstrin homology domain; ER, endoplasmic reticulum; NUDIX domain, nucleoside diphosphate linked moiety X-type motif.
Expression and function of human and mouse TRP channels
| Channel subunit | Chromosomal location | Cellular expression | Physiological functions |
|---|---|---|---|
| Human: 3q22-q24; mouse: 9 E4 | Ubiquitous | Generation of the excitatory postsynaptic potential in brain; netrin-1 and brain-derived neurotrophic factor (BDNF)-mediated growth cone guidance; connections to sleep/wakefulness states, alertness and appetite; brain development (together with TRPC5); glutamate signaling in hippocampus; regulation of smooth muscle contraction pulmonary system; platelet function; skeletal muscle differentiation; mechano-sensation? | |
| Human: 11p15.4-p15.3 (pseudogene); mouse: 7 F1 | Dendritic tips of the vomeronasal sensory neurons and spermatozoa (mouse) | Pheromone detection that regulates sexual and social behaviors, such as gender recognition and male-male aggression (mouse) | |
| Human: 4q25-q27; mouse: 3 B | Central nervous system (CNS) and smooth and cardiac muscle cells | BDNF-mediated growth cone guidance (TRPC1-independent); spine formation in brain; γ-aminobutyric acid signaling in striatum; astrocyte function; moto-control in cerebellum; cerebral vaso-motor control; erythropoietin function; functional coupling to orexin receptor | |
| Human: 13q13.1-q13.2; mouse: 3 D | Placenta, adrenal gland, CNS, endothelium, smooth muscle cells, kidney, intestinal cells of Cajal | Endothelium-dependent vasorelaxation and regulation of transcellular permeation of the endothelial layer; cell-cell adhesion in endothelium through junctional proteins; hypoxia sensing together with TRPC1 | |
| Human: Xq23-q24; mouse: X F2 | Brain, especially in fetal brain and very weak expression in other tissues | Brain development (together with TRPC1); neurite growth, growth cone guidance and morphology; anxiety, fear and reward processing in nucleus accumbens | |
| Human: 11q21-q22; mouse: 9 A1 | Smooth muscle cells, lung, brain, placenta, kidney (podocyte foot processes), spleen, ovary and small intestine, neutrophils | Vaso-motor regulation; α1 signaling in smooth muscle; smooth muscle proliferation; angiogenesis; endocannabinoid signaling in the brain; promotion of dendrite growth and synapse forming in the developing brain; glomerular filter integrity in the kidney; platelet function; redox sensor; mechano-sensor? | |
| Human: 5q31.2; mouse: 13 B2 | Pituitary glands, kidney and CNS (human); heart and lung; weak in CNS and kidney (mouse) | Controls respiratory rhythm activity in pre-Bötzinger complex in the brain | |
| Human: 17p13.3; mouse: 11 B3 | Dorsal root and trigeminal ganglia; spinal and peripheral nerve terminals, brain, skin (cutaneous sensory nerve fibers, mast cells, epidermal keratinocytes, dermal blood vessels, the inner root sheet and the infundibulum of hair follicles, differentiated sebocytes, sweat gland ducts, and the secretory portion of eccrine sweat glands), pancreas, bladder (urothelium, smooth muscle, blood vessels and neurons) | Thermo-sensation (heat); autonomic thermoregulation; nociception; pain management; synaptic plasticity in the brain (long-term depression); endocannabinoid signaling in the brain; food intake regulation; growth cone guidance in the brain; osmosensing in the brain by a particular TRPV1 variant; multiple functions in the gut | |
| Human: 17p11.2; mouse: 11 B2 | Dorsal root ganglia and CNS neurons, gastro-intestinal tract, spleen, mast cells, smooth, cardiac and skeletal muscle cells | Thermo-sensation (noxious heat); nociception; axon outgrowth in spinal motor neurons; critical for phagocytosis in macrophages | |
| Human: 17p13.3; mouse: 11 B4 | Dorsal root and trigeminal ganglion neurons, brain, keratinocytes, hair follicles, tongue and testis | Thermo-sensation (moderate heat); nociception; skin integrity, wound healing, hair growth and sebocyte function | |
| Human: 12q24.1; mouse: 5 F | CNS (large neurons), trigeminal ganglia, heart, liver, kidney, skin (keratinocytes), osteoblasts, blood vessels (endothelium), bladder (urothelium) and testis, cochlea (inner and outer hair cells, marginal cells of the cochlear stria vascularis), kidney (epithelial cells of tubules and glomeruli) | Thermo-sensation (moderate heat); mechano-sensation; osmo-sensation; nociception; modulation of cell migration; endothelium vaso-motor control and possible shear stress sensor; mechano-receptor in urothelium (important for voiding control); osteogenesis and osteoclast function; important in human bone and neurodegenerative diseases; control adherens junctions in skin; cochlea | |
| Human: 7q35; mouse: 6 B2 | High in kidney; lower in gastro-intestinal tract, pancreas, testis, prostate, placenta, brain and salivary gland | Ca2+ (re)absorption channel in kidney and intestines | |
| Human: 7q33-q34; mouse: 6 B2 | High in gastro-intestinal tract; lower in kidney, pancreas, testis, prostate, placenta, brain and salivary gland | Ca2+ (re)absorption channel in intestines and kidney; key player in Ca2+/1,25-dihydroxyvitamin D3-induced keratinocyte development in the skin | |
| Human: 15q13-q14; mouse: 7 C | Skin melanocytes, retinal bipolar ganglia | Light response in ON bipolar retinal ganglia cells; tumor repressor in melanoma cells | |
| Human: 21q22.3; mouse: 10 C1 | Brain, bone marrow, peripheral blood cells (neutrophils), lung, spleen, eye, heart and liver | Oxidative and nitrosative stress response; activation of granulocytes; pancreas insulin release; critical in apoptosis | |
| Human: 9q21.13; mouse: 19 C1 | Primarily in kidney; lower in brain, sensory neurons, testis, ovary, pancreas and spinal cord | Steroid hormone (pregnanolon) sensor; possible regulator in endocrine pancreas, glia cells and cerebellar Purkinje cells | |
| Human: 19q13.32; mouse: 7 B4 | Heart, exo- and endocrine pancreas, mast cells, smooth muscle, macula densa, lung and placenta | Mast cell degranulation (histamine release) and migration as a critical Ca-impermeable cation channel regulating Ca2+ entry; catecholamine release from chromaffin cells; vasopressin release from paraventricular and supraoptic hypothalamic nuclei | |
| Human: 11p15.5; mouse: 7 F5 | Tongue (taste bud cells), lungs, testis, digestive system, brain, endocrine pancreas | Taste (sweet, bitter, umami); positive regulator of glucose-induced insulin release; trigeminal nasal chemoreception | |
| Human: 9q21.13; mouse: 19 B | Kidney, colon and intestine | Mg2+ homeostasis and reabsorption in kidney and intestine | |
| Human: 15q21; mouse: 2 F2 | Ubiquitous | Mg2+ homeostasis and reabsorption in kidney and intestine; cell cycle control; gastrulation; development of thymocytes (thymopoiesis); cell migration; shear stress sensor?; skeletogenesis? | |
| Human: 2q37.1; mouse: 1 C5 | Sensory dorsal root and trigeminal ganglia neurons, nodose ganglion cells innervating the upper gut, vascular smooth muscle cells, liver, gastric fundus, bladder (urothelium) and different tissues of the male genital tract; high in tumors from prostate, breast, colon, lung and skin | Thermo-sensation (cold); sperm motility, acrosome reaction | |
| Human: 8q13; mouse: 1 A3 | Hair cells, sensory dorsal root and trigeminal ganglia neurons, fibroblasts | Thermo-sensation (noxious cold); the most versatile chemo-sensor; mechano-sensation?; nociception; olfactory responses; cold-induced contraction in colon and bladder | |
| Human: 19p13.3-13.2; mouse: 8 A1.1 | Ubiquitous; intracellular ion channel | Essential for endocytosis and endosomal/lysosomal function; regulation of autophagy | |
| Human: 1p22; mouse: 3 H3 | Ubiquitous; intracellular ion channel | Endosomal/lysosomal function | |
| Human: 1p22.3; mouse: 3 H3 | Hair cells (stria vascularis, stereocilia); intracellular ion channel | Endosomal/lysosomal function; autophagy; hair cell maturation? | |
| Human: 4q22; mouse: 5 E4 | Ubiquitous; mostly in ovary, fetal and adult kidney, testis, and small intestine in both motile and primary cilia | Cardiac, skeletal and renal development; integrity of the vessel wall; negative regulator of endogenous mechano-sensitive channels; mechano-receptor and flow-sensor in endothelium; apoptosis | |
| Human: 10q24-q25; mouse: 19 D1 | Adult heart, skeletal muscle, brain, spleen, testis, retina and liver | Renal development; part of putative sour sensor | |
| Human: 5q31; mouse: 18 B3 | Testis, brain and kidney | Spermatogenesis? | |
BDNF, brain-derived neurotrophic factor; CNS, central nervous system.