Literature DB >> 21401093

Nonmonotonic assembly of a deep-cavity cavitand.

Haiying Gan1, Christopher J Benjamin, Bruce C Gibb.   

Abstract

The synthesis and assembly properties of a new water-soluble deep-cavity cavitand are discussed. For a homologous series of alkanes, the host can form a range of approximately isoenergetic 1:1, 2:1, and 2:2 complexes. As a result of this 'confluence' of binding and assembly the host displays an unusual, nonmonotonic, assembly profile. Thus, no or limited assembly is observed with methane through butane, pentane triggers assembly, and hexane through octane again does not promote assembly, whereas nonane and a larger guest again induce assembly. This unusual behavior is discussed in the context of the diversity of nodes of chemical systems (networks).
© 2011 American Chemical Society

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Year:  2011        PMID: 21401093     DOI: 10.1021/ja200633d

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  26 in total

1.  Binding of carboxylate and trimethylammonium salts to octa-acid and TEMOA deep-cavity cavitands.

Authors:  Matthew R Sullivan; Punidha Sokkalingam; Thong Nguyen; James P Donahue; Bruce C Gibb
Journal:  J Comput Aided Mol Des       Date:  2016-07-18       Impact factor: 3.686

2.  Metal-coordinated water-soluble cavitands act as C-H oxidation catalysts.

Authors:  Katherine E Djernes; Orly Moshe; Magi Mettry; Donald D Richards; Richard J Hooley
Journal:  Org Lett       Date:  2012-01-24       Impact factor: 6.005

3.  The SAMPL5 host-guest challenge: computing binding free energies and enthalpies from explicit solvent simulations by the attach-pull-release (APR) method.

Authors:  Jian Yin; Niel M Henriksen; David R Slochower; Michael K Gilson
Journal:  J Comput Aided Mol Des       Date:  2016-09-16       Impact factor: 3.686

4.  The thermodynamics of guest complexation to octa-acid and tetra-endo-methyl octa-acid: reference data for the sixth statistical assessment of modeling of proteins and ligands (SAMPL6).

Authors:  Matthew R Sullivan; Wei Yao; Bruce C Gibb
Journal:  Supramol Chem       Date:  2018-11-18       Impact factor: 1.688

Review 5.  The aqueous supramolecular chemistry of cucurbit[n]urils, pillar[n]arenes and deep-cavity cavitands.

Authors:  James Murray; Kimoon Kim; Tomoki Ogoshi; Wei Yao; Bruce C Gibb
Journal:  Chem Soc Rev       Date:  2017-05-09       Impact factor: 54.564

6.  Predicting ligand binding affinity using on- and off-rates for the SAMPL6 SAMPLing challenge.

Authors:  Tom Dixon; Samuel D Lotz; Alex Dickson
Journal:  J Comput Aided Mol Des       Date:  2018-08-23       Impact factor: 3.686

7.  Preparative scale and convenient synthesis of a water-soluble, deep cavitand.

Authors:  Simone Mosca; Yang Yu; Julius Rebek
Journal:  Nat Protoc       Date:  2016-07-07       Impact factor: 13.491

8.  Absolute binding free energies for octa-acids and guests in SAMPL5 : Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge.

Authors:  Florentina Tofoleanu; Juyong Lee; Frank C Pickard Iv; Gerhard König; Jing Huang; Minkyung Baek; Chaok Seok; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2016-09-30       Impact factor: 3.686

9.  A combined treatment of hydration and dynamical effects for the modeling of host-guest binding thermodynamics: the SAMPL5 blinded challenge.

Authors:  Rajat Kumar Pal; Kamran Haider; Divya Kaur; William Flynn; Junchao Xia; Ronald M Levy; Tetiana Taran; Lauren Wickstrom; Tom Kurtzman; Emilio Gallicchio
Journal:  J Comput Aided Mol Des       Date:  2016-09-30       Impact factor: 3.686

10.  Detailed potential of mean force studies on host-guest systems from the SAMPL6 challenge.

Authors:  Lin Frank Song; Nupur Bansal; Zheng Zheng; Kenneth M Merz
Journal:  J Comput Aided Mol Des       Date:  2018-08-24       Impact factor: 3.686

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