Literature DB >> 21385588

Bistable responses in bacterial genetic networks: designs and dynamical consequences.

Abhinav Tiwari1, J Christian J Ray, Jatin Narula, Oleg A Igoshin.   

Abstract

A key property of living cells is their ability to react to stimuli with specific biochemical responses. These responses can be understood through the dynamics of underlying biochemical and genetic networks. Evolutionary design principles have been well studied in networks that display graded responses, with a continuous relationship between input signal and system output. Alternatively, biochemical networks can exhibit bistable responses so that over a range of signals the network possesses two stable steady states. In this review, we discuss several conceptual examples illustrating network designs that can result in a bistable response of the biochemical network. Next, we examine manifestations of these designs in bacterial master-regulatory genetic circuits. In particular, we discuss mechanisms and dynamic consequences of bistability in three circuits: two-component systems, sigma-factor networks, and a multistep phosphorelay. Analyzing these examples allows us to expand our knowledge of evolutionary design principles networks with bistable responses.
Copyright © 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21385588      PMCID: PMC3095517          DOI: 10.1016/j.mbs.2011.03.004

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  141 in total

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Authors:  Q Pan; D A Garsin; R Losick
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2.  Bacterial persistence as a phenotypic switch.

Authors:  Nathalie Q Balaban; Jack Merrin; Remy Chait; Lukasz Kowalik; Stanislas Leibler
Journal:  Science       Date:  2004-08-12       Impact factor: 47.728

3.  Functional characterization in vitro of all two-component signal transduction systems from Escherichia coli.

Authors:  Kaneyoshi Yamamoto; Kiyo Hirao; Taku Oshima; Hirofumi Aiba; Ryutaro Utsumi; Akira Ishihama
Journal:  J Biol Chem       Date:  2004-11-02       Impact factor: 5.157

4.  High- and low-threshold genes in the Spo0A regulon of Bacillus subtilis.

Authors:  Masaya Fujita; José Eduardo González-Pastor; Richard Losick
Journal:  J Bacteriol       Date:  2005-02       Impact factor: 3.490

5.  Developmental commitment in a bacterium.

Authors:  Jonathan Dworkin; Richard Losick
Journal:  Cell       Date:  2005-05-06       Impact factor: 41.582

6.  Comparison of classical and autogenous systems of regulation in inducible operons.

Authors:  M A Savageau
Journal:  Nature       Date:  1974-12-13       Impact factor: 49.962

7.  An amplified sensitivity arising from covalent modification in biological systems.

Authors:  A Goldbeter; D E Koshland
Journal:  Proc Natl Acad Sci U S A       Date:  1981-11       Impact factor: 11.205

8.  The vancomycin resistance VanRS two-component signal transduction system of Streptomyces coelicolor.

Authors:  Matthew I Hutchings; Hee-Jeon Hong; Mark J Buttner
Journal:  Mol Microbiol       Date:  2006-02       Impact factor: 3.501

9.  Structure and function of the Bacillus SpoIIE protein and its localization to sites of sporulation septum assembly.

Authors:  I Barák; J Behari; G Olmedo; P Guzmán; D P Brown; E Castro; D Walker; J Westpheling; P Youngman
Journal:  Mol Microbiol       Date:  1996-03       Impact factor: 3.501

10.  Experimental evidence for a zero-order ultrasensitivity in a simple substrate cycle.

Authors:  A Cimino; J F Hervagault
Journal:  Biochem Biophys Res Commun       Date:  1987-12-16       Impact factor: 3.575

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  31 in total

1.  An analytical approach to bistable biological circuit discrimination using real algebraic geometry.

Authors:  Dan Siegal-Gaskins; Elisa Franco; Tiffany Zhou; Richard M Murray
Journal:  J R Soc Interface       Date:  2015-07-06       Impact factor: 4.118

2.  Ultrasensitivity of the Bacillus subtilis sporulation decision.

Authors:  Jatin Narula; Seram N Devi; Masaya Fujita; Oleg A Igoshin
Journal:  Proc Natl Acad Sci U S A       Date:  2012-11-19       Impact factor: 11.205

3.  Unraveling the regulatory connections between two controllers of breast cancer cell fate.

Authors:  Jinho Lee; Abhinav Tiwari; Victor Shum; Gordon B Mills; Michael A Mancini; Oleg A Igoshin; Gábor Balázsi
Journal:  Nucleic Acids Res       Date:  2014-05-03       Impact factor: 16.971

4.  Threshold response and bistability in gene regulation by small noncoding RNA.

Authors:  Sutapa Mukherji
Journal:  Eur Phys J E Soft Matter       Date:  2018-01-31       Impact factor: 1.890

Review 5.  Transcranial Electrical Stimulation: What We Know and Do Not Know About Mechanisms.

Authors:  Anna Fertonani; Carlo Miniussi
Journal:  Neuroscientist       Date:  2016-07-08       Impact factor: 7.519

6.  Coupling between feedback loops in autoregulatory networks affects bistability range, open-loop gain and switching times.

Authors:  Abhinav Tiwari; Oleg A Igoshin
Journal:  Phys Biol       Date:  2012-09-25       Impact factor: 2.583

7.  Multiple factors contribute to bimodal toxin gene expression in Clostridioides (Clostridium) difficile.

Authors:  Eric M Ransom; Gabriela M Kaus; Phuong M Tran; Craig D Ellermeier; David S Weiss
Journal:  Mol Microbiol       Date:  2018-10-14       Impact factor: 3.501

8.  Tunable phenotypic variability through an autoregulatory alternative sigma factor circuit.

Authors:  Christian P Schwall; Torkel E Loman; Bruno M C Martins; Sandra Cortijo; Casandra Villava; Vassili Kusmartsev; Toby Livesey; Teresa Saez; James C W Locke
Journal:  Mol Syst Biol       Date:  2021-07       Impact factor: 11.429

9.  Two component systems: physiological effect of a third component.

Authors:  Baldiri Salvado; Ester Vilaprinyo; Hiren Karathia; Albert Sorribas; Rui Alves
Journal:  PLoS One       Date:  2012-02-17       Impact factor: 3.240

10.  Split histidine kinases enable ultrasensitivity and bistability in two-component signaling networks.

Authors:  Munia Amin; Steven L Porter; Orkun S Soyer
Journal:  PLoS Comput Biol       Date:  2013-03-07       Impact factor: 4.475

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