Literature DB >> 21383544

Beyond knockout rats: new insights into finer genome manipulation in rats.

Guanyi Huang1, Chang Tong, Dhruv S Kumbhani, Charles Ashton, Hexin Yan, Qi-Long Ying.   

Abstract

The ability to "knockout" specific genes in mice via embryonic stem (ES) cell-based gene-targeting technology has significantly enriched our understanding of gene function in normal and disease phenotypes. Improvements on this original strategy have been developed to enable the manipulation of genomes in a more sophisticated fashion with unprecedented precision. The rat is the model of choice in many areas of scientific investigation despite the lack of rat genetic toolboxes. Most Recent advances of zinc finger nucleases (ZFNs) and rat ES cells are diminishing the gap between rat and mouse with respect to reverse genetic approaches. Importantly, the establishment of rat ES cell-based gene targeting technology, in combination with the unique advantages of using rats, provides new, exciting opportunities to create animal models that mimic human diseases more faithfully. We hereby report our recent results concerning finer genetic modifications in the rat, and propose their potential applications in addressing biological questions.

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Year:  2011        PMID: 21383544      PMCID: PMC3100883          DOI: 10.4161/cc.10.7.15233

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


  66 in total

1.  Neural correlates, computation and behavioural impact of decision confidence.

Authors:  Adam Kepecs; Naoshige Uchida; Hatim A Zariwala; Zachary F Mainen
Journal:  Nature       Date:  2008-09-11       Impact factor: 49.962

2.  Targeted transgene integration in plant cells using designed zinc finger nucleases.

Authors:  Charles Q Cai; Yannick Doyon; W Michael Ainley; Jeffrey C Miller; Russell C Dekelver; Erica A Moehle; Jeremy M Rock; Ya-Li Lee; Robbi Garrison; Lisa Schulenberg; Ryan Blue; Andrew Worden; Lisa Baker; Farhoud Faraji; Lei Zhang; Michael C Holmes; Edward J Rebar; Trevor N Collingwood; Beth Rubin-Wilson; Philip D Gregory; Fyodor D Urnov; Joseph F Petolino
Journal:  Plant Mol Biol       Date:  2008-12-27       Impact factor: 4.076

Review 3.  Progress and prospects in rat genetics: a community view.

Authors:  Timothy J Aitman; John K Critser; Edwin Cuppen; Anna Dominiczak; Xose M Fernandez-Suarez; Jonathan Flint; Dominique Gauguier; Aron M Geurts; Michael Gould; Peter C Harris; Rikard Holmdahl; Norbert Hubner; Zsuzsanna Izsvák; Howard J Jacob; Takashi Kuramoto; Anne E Kwitek; Anna Marrone; Tomoji Mashimo; Carol Moreno; John Mullins; Linda Mullins; Tomas Olsson; Michal Pravenec; Lela Riley; Kathrin Saar; Tadao Serikawa; James D Shull; Claude Szpirer; Simon N Twigger; Birger Voigt; Kim Worley
Journal:  Nat Genet       Date:  2008-05       Impact factor: 38.330

4.  DNA repair by nonhomologous end joining and homologous recombination during cell cycle in human cells.

Authors:  Zhiyong Mao; Michael Bozzella; Andrei Seluanov; Vera Gorbunova
Journal:  Cell Cycle       Date:  2008-09-15       Impact factor: 4.534

5.  Germline competent embryonic stem cells derived from rat blastocysts.

Authors:  Ping Li; Chang Tong; Ruty Mehrian-Shai; Li Jia; Nancy Wu; Youzhen Yan; Robert E Maxson; Eric N Schulze; Houyan Song; Chih-Lin Hsieh; Martin F Pera; Qi-Long Ying
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

6.  Capture of authentic embryonic stem cells from rat blastocysts.

Authors:  Mia Buehr; Stephen Meek; Kate Blair; Jian Yang; Janice Ure; Jose Silva; Renee McLay; John Hall; Qi-Long Ying; Austin Smith
Journal:  Cell       Date:  2008-12-26       Impact factor: 41.582

7.  Emerging gene knockout technology in zebrafish: zinc-finger nucleases.

Authors:  Sharon L Amacher
Journal:  Brief Funct Genomic Proteomic       Date:  2008-11

8.  Pronuclear DNA injection for the production of transgenic rats.

Authors:  Jean Cozzi; Ignacio Anegon; Valérie Braun; Anne-Catherine Gross; Christel Merrouche; Yacine Cherifi
Journal:  Methods Mol Biol       Date:  2009

9.  The ground state of embryonic stem cell self-renewal.

Authors:  Qi-Long Ying; Jason Wray; Jennifer Nichols; Laura Batlle-Morera; Bradley Doble; James Woodgett; Philip Cohen; Austin Smith
Journal:  Nature       Date:  2008-05-22       Impact factor: 49.962

10.  Optical deconstruction of parkinsonian neural circuitry.

Authors:  Viviana Gradinaru; Murtaza Mogri; Kimberly R Thompson; Jaimie M Henderson; Karl Deisseroth
Journal:  Science       Date:  2009-03-19       Impact factor: 47.728

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  18 in total

Review 1.  Rat placentation: an experimental model for investigating the hemochorial maternal-fetal interface.

Authors:  M J Soares; D Chakraborty; M A Karim Rumi; T Konno; S J Renaud
Journal:  Placenta       Date:  2012-01-28       Impact factor: 3.481

Review 2.  The emerging role for rat models in gene discovery.

Authors:  Melinda R Dwinell; Jozef Lazar; Aron M Geurts
Journal:  Mamm Genome       Date:  2011-07-06       Impact factor: 2.957

Review 3.  How can grafted breast cancer models be optimized?

Authors:  Séverine Mollard; Yoanne Mousseau; Yasser Baaj; Laurence Richard; Jeanne Cook-Moreau; Jacques Monteil; Benoît Funalot; Franck G Sturtz
Journal:  Cancer Biol Ther       Date:  2011-11-15       Impact factor: 4.742

4.  Cellular resolution functional imaging in behaving rats using voluntary head restraint.

Authors:  Benjamin B Scott; Carlos D Brody; David W Tank
Journal:  Neuron       Date:  2013-09-19       Impact factor: 17.173

5.  Homozygous and heterozygous p53 knockout rats develop metastasizing sarcomas with high frequency.

Authors:  Ruben van Boxtel; Raoul V Kuiper; Pim W Toonen; Sebastiaan van Heesch; Roel Hermsen; Alain de Bruin; Edwin Cuppen
Journal:  Am J Pathol       Date:  2011-08-18       Impact factor: 4.307

6.  Germline transmission of a novel rat embryonic stem cell line derived from transgenic rats.

Authors:  Hongsheng Men; Beth A Bauer; Elizabeth C Bryda
Journal:  Stem Cells Dev       Date:  2012-05-04       Impact factor: 3.272

Review 7.  The new pig on the block: modelling cancer in pigs.

Authors:  Tatiana Flisikowska; Alexander Kind; Angelika Schnieke
Journal:  Transgenic Res       Date:  2013-06-08       Impact factor: 2.788

8.  A rat model of diabetic wound infection for the evaluation of topical antimicrobial therapies.

Authors:  João J Mendes; Clara I Leandro; Dolores P Bonaparte; Andreia L Pinto
Journal:  Comp Med       Date:  2012-02       Impact factor: 0.982

9.  Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters.

Authors:  Paolo Uva; Letizia Da Sacco; Manuela Del Cornò; Antonella Baldassarre; Paola Sestili; Massimiliano Orsini; Alessia Palma; Sandra Gessani; Andrea Masotti
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

Review 10.  Rat embryonic stem cells create new era in development of genetically manipulated rat models.

Authors:  Kazushi Kawaharada; Masaki Kawamata; Takahiro Ochiya
Journal:  World J Stem Cells       Date:  2015-08-26       Impact factor: 5.326

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