Literature DB >> 21732192

The emerging role for rat models in gene discovery.

Melinda R Dwinell1, Jozef Lazar, Aron M Geurts.   

Abstract

Rat models have been used for many decades to study physiological and pathophysiological mechanisms. Prior to the release of the rat genome and new technologies for targeting gene manipulation, the rat had been the underdog in the genomics era, despite the abundance of physiological data compared to the mouse. The overarching goal of biomedical research is to improve health and advance medical science. Translating human disease gene discovery and validation in the rat, through the use of emerging technologies and integrated tools and databases, is providing power to understand the genetics, environmental influences, and biology of disease. In this review we briefly outline the rat models, bioinformatics tools, and technologies that are changing the landscape of translational research. The strategies used to translate disease traits to genes to function, and, ultimately, to improve human health is discussed. Finally, our perspective on how rat models will continue to positively impact biomedical research is provided.

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Year:  2011        PMID: 21732192      PMCID: PMC3643810          DOI: 10.1007/s00335-011-9346-2

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


  67 in total

1.  Identification of novel carcinogen-mediated mammary tumor susceptibility loci in the rat using the chromosome substitution technique.

Authors:  Tatjana Adamovic; Donna McAllister; Tao Wang; Dragan Adamovic; J Jordi Rowe; Carol Moreno; Josef Lazar; Howard J Jacob; Sonia L Sugg
Journal:  Genes Chromosomes Cancer       Date:  2010-11       Impact factor: 5.006

Review 2.  Gene targeting in the rat: advances and opportunities.

Authors:  Howard J Jacob; Jozef Lazar; Melinda R Dwinell; Carol Moreno; Aron M Geurts
Journal:  Trends Genet       Date:  2010-10-01       Impact factor: 11.639

3.  Fine mapping and expression of candidate genes within the chromosome 10 QTL region of the high and low alcohol-drinking rats.

Authors:  Paula J Bice; Tiebing Liang; Lili Zhang; Tamara J Graves; Lucinda G Carr; Dongbing Lai; Mark W Kimpel; Tatiana Foroud
Journal:  Alcohol       Date:  2010-08-12       Impact factor: 2.405

4.  Vascular responses in aortic rings of a consomic rat panel derived from the Fawn Hooded Hypertensive strain.

Authors:  Mary Pat Kunert; Melinda R Dwinell; Julian H Lombard
Journal:  Physiol Genomics       Date:  2010-09-14       Impact factor: 3.107

5.  Targeted integration in rat and mouse embryos with zinc-finger nucleases.

Authors:  Xiaoxia Cui; Diana Ji; Daniel A Fisher; Yumei Wu; David M Briner; Edward J Weinstein
Journal:  Nat Biotechnol       Date:  2010-12-12       Impact factor: 54.908

6.  Adducin- and ouabain-related gene variants predict the antihypertensive activity of rostafuroxin, part 1: experimental studies.

Authors:  Mara Ferrandi; Isabella Molinari; Lucia Torielli; Gloria Padoani; Sergio Salardi; Maria Pia Rastaldi; Patrizia Ferrari; Giuseppe Bianchi
Journal:  Sci Transl Med       Date:  2010-11-24       Impact factor: 17.956

7.  Adducin- and ouabain-related gene variants predict the antihypertensive activity of rostafuroxin, part 2: clinical studies.

Authors:  Chiara Lanzani; Lorena Citterio; Nicola Glorioso; Paolo Manunta; Grazia Tripodi; Erika Salvi; Simona Delli Carpini; Mara Ferrandi; Elisabetta Messaggio; Jan A Staessen; Daniele Cusi; Fabio Macciardi; Giuseppe Argiolas; Giovanni Valentini; Patrizia Ferrari; Giuseppe Bianchi
Journal:  Sci Transl Med       Date:  2010-11-24       Impact factor: 17.956

8.  Creation and characterization of a renin knockout rat.

Authors:  Carol Moreno; Mathew Hoffman; Timothy J Stodola; Daniela N Didier; Jozef Lazar; Aron M Geurts; Paula E North; Howard J Jacob; Andrew S Greene
Journal:  Hypertension       Date:  2011-01-17       Impact factor: 10.190

9.  Production of p53 gene knockout rats by homologous recombination in embryonic stem cells.

Authors:  Chang Tong; Ping Li; Nancy L Wu; Youzhen Yan; Qi-Long Ying
Journal:  Nature       Date:  2010-08-11       Impact factor: 49.962

10.  A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk.

Authors:  Matthias Heinig; Enrico Petretto; Chris Wallace; Leonardo Bottolo; Maxime Rotival; Han Lu; Yoyo Li; Rizwan Sarwar; Sarah R Langley; Anja Bauerfeind; Oliver Hummel; Young-Ae Lee; Svetlana Paskas; Carola Rintisch; Kathrin Saar; Jason Cooper; Rachel Buchan; Elizabeth E Gray; Jason G Cyster; Jeanette Erdmann; Christian Hengstenberg; Seraya Maouche; Willem H Ouwehand; Catherine M Rice; Nilesh J Samani; Heribert Schunkert; Alison H Goodall; Herbert Schulz; Helge G Roider; Martin Vingron; Stefan Blankenberg; Thomas Münzel; Tanja Zeller; Silke Szymczak; Andreas Ziegler; Laurence Tiret; Deborah J Smyth; Michal Pravenec; Timothy J Aitman; Francois Cambien; David Clayton; John A Todd; Norbert Hubner; Stuart A Cook
Journal:  Nature       Date:  2010-09-08       Impact factor: 49.962

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  11 in total

Review 1.  Rat placentation: an experimental model for investigating the hemochorial maternal-fetal interface.

Authors:  M J Soares; D Chakraborty; M A Karim Rumi; T Konno; S J Renaud
Journal:  Placenta       Date:  2012-01-28       Impact factor: 3.481

2.  PhenoMiner: a quantitative phenotype database for the laboratory rat, Rattus norvegicus. Application in hypertension and renal disease.

Authors:  Shur-Jen Wang; Stanley J F Laulederkind; G Thomas Hayman; Victoria Petri; Weisong Liu; Jennifer R Smith; Rajni Nigam; Melinda R Dwinell; Mary Shimoyama
Journal:  Database (Oxford)       Date:  2015-01-28       Impact factor: 3.451

3.  A simple, quantitative method using alginate gel to determine rat colonic tumor volume in vivo.

Authors:  Amy A Irving; Lindsay B Young; Jennifer K Pleiman; Michael J Konrath; Blake Marzella; Michael Nonte; Justin Cacciatore; Madeline R Ford; Linda Clipson; James M Amos-Landgraf; William F Dove
Journal:  Comp Med       Date:  2014-04       Impact factor: 0.982

4.  Rats are the smart choice: Rationale for a renewed focus on rats in behavioral genetics.

Authors:  Clarissa C Parker; Hao Chen; Shelly B Flagel; Aron M Geurts; Jerry B Richards; Terry E Robinson; Leah C Solberg Woods; Abraham A Palmer
Journal:  Neuropharmacology       Date:  2013-06-18       Impact factor: 5.250

5.  Rat mir-155 generated from the lncRNA Bic is 'hidden' in the alternate genomic assembly and reveals the existence of novel mammalian miRNAs and clusters.

Authors:  Paolo Uva; Letizia Da Sacco; Manuela Del Cornò; Antonella Baldassarre; Paola Sestili; Massimiliano Orsini; Alessia Palma; Sandra Gessani; Andrea Masotti
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

6.  Comparison of 2 rat breeding schemes using conventional caging.

Authors:  Kenneth P Allen; Melinda R Dwinell; Allison Zappa; Anne Temple; Joseph Thulin
Journal:  J Am Assoc Lab Anim Sci       Date:  2013-03       Impact factor: 1.232

7.  Comprehensive coverage of cardiovascular disease data in the disease portals at the Rat Genome Database.

Authors:  Shur-Jen Wang; Stanley J F Laulederkind; G Thomas Hayman; Victoria Petri; Jennifer R Smith; Marek Tutaj; Rajni Nigam; Melinda R Dwinell; Mary Shimoyama
Journal:  Physiol Genomics       Date:  2016-06-10       Impact factor: 3.107

8.  Rat Breeding Parameters According to Floor Space Available in Cage.

Authors:  Kenneth P Allen; Melinda R Dwinell; Allison M Zappa; Andrea M Michaels; Kathleen M Murray; Joseph D Thulin
Journal:  J Am Assoc Lab Anim Sci       Date:  2016-01       Impact factor: 1.232

9.  Genome variation and conserved regulation identify genomic regions responsible for strain specific phenotypes in rat.

Authors:  David Martín-Gálvez; Denis Dunoyer de Segonzac; Man Chun John Ma; Anne E Kwitek; David Thybert; Paul Flicek
Journal:  BMC Genomics       Date:  2017-12-22       Impact factor: 3.969

10.  Isolation of muscle stem cells from rat skeletal muscles.

Authors:  Francesca Boscolo Sesillo; Michelle Wong; Amy Cortez; Marianna Alperin
Journal:  Stem Cell Res       Date:  2019-12-10       Impact factor: 2.020

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