Literature DB >> 2137823

Thermodynamic analyses of the catalytic pathway of F1-ATPase from Escherichia coli. Implications regarding the nature of energy coupling by F1-ATPases.

M K al-Shawi1, D Parsonage, A E Senior.   

Abstract

Thermodynamic properties of 12 different F1-ATPase enzymes were analyzed in order to gain insights into the catalytic mechanism and the nature of energy coupling to delta mu H+. The enzymes were normal soluble Escherichia coli F1, a group of nine beta-subunit mutant soluble E. coli F1 enzymes (G142S, K155Q, K155E, E181Q, E192Q, M209I, D242N, D242V, R246C), and both soluble and membrane-bound bovine heart mitochondrial F1. Unisite activity was studied by use of Gibbs free energy diagrams, difference energy diagrams, and derivation of linear free energy relationships. This allowed construction of binding energy diagrams for both the unisite ATP hydrolysis and ATP synthesis reaction pathways, which were in agreement. The binding energy diagrams showed that the step of Pi binding is a major energy-requiring step in ATP synthesis, as is the step of ATP release. It is suggested that there are two major catalytic enzyme conformations, and ATP- and an ADP-binding conformation. The effects of the mutations on the rate-limiting steps of multisite as compared to unisite activity were correlated, suggesting a direct link between the rate-limiting steps of the two types of activity. Multisite activity was analyzed by Arrhenius plots and by study of relative promotion from unisite to multisite rate. Changes in binding energy due to mutation were seen to have direct effects on multisite catalysis. From all the data, a model is derived to describe the mechanism of ATP synthesis. ATP hydrolysis, and energy coupling to delta mu H+ in F1F0-ATPases.

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Year:  1990        PMID: 2137823

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  18 in total

1.  Intragenic and intergenic suppression of the Escherichia coli ATP synthase subunit a mutation of Gly-213 to Asn: functional interactions between residues in the proton transport site.

Authors:  P H Kuo; R K Nakamoto
Journal:  Biochem J       Date:  2000-05-01       Impact factor: 3.857

2.  Converting conformational changes to electrostatic energy in molecular motors: The energetics of ATP synthase.

Authors:  Marek Strajbl; Avital Shurki; Arieh Warshel
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-01       Impact factor: 11.205

Review 3.  Quaternary structure of ATP synthases: symmetry and asymmetry in the F1 moiety.

Authors:  L M Amzel; M A Bianchet; P L Pedersen
Journal:  J Bioenerg Biomembr       Date:  1992-10       Impact factor: 2.945

Review 4.  Catalytic sites of Escherichia coli F1-ATPase.

Authors:  A E Senior
Journal:  J Bioenerg Biomembr       Date:  1992-10       Impact factor: 2.945

5.  Temperature dependence of single molecule rotation of the Escherichia coli ATP synthase F1 sector reveals the importance of gamma-beta subunit interactions in the catalytic dwell.

Authors:  Mizuki Sekiya; Robert K Nakamoto; Marwan K Al-Shawi; Mayumi Nakanishi-Matsui; Masamitsu Futai
Journal:  J Biol Chem       Date:  2009-06-05       Impact factor: 5.157

Review 6.  The rotary mechanism of the ATP synthase.

Authors:  Robert K Nakamoto; Joanne A Baylis Scanlon; Marwan K Al-Shawi
Journal:  Arch Biochem Biophys       Date:  2008-05-20       Impact factor: 4.013

7.  Ligand-dependent structural variations in Escherichia coli F1 ATPase revealed by cryoelectron microscopy.

Authors:  E P Gogol; E Johnston; R Aggeler; R A Capaldi
Journal:  Proc Natl Acad Sci U S A       Date:  1990-12       Impact factor: 11.205

8.  Rate of hydrolysis in ATP synthase is fine-tuned by α-subunit motif controlling active site conformation.

Authors:  Tamás Beke-Somfai; Per Lincoln; Bengt Nordén
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-23       Impact factor: 11.205

9.  Thermodynamic analysis of F1-ATPase rotary catalysis using high-speed imaging.

Authors:  Rikiya Watanabe; Yoshihiro Minagawa; Hiroyuki Noji
Journal:  Protein Sci       Date:  2014-10-21       Impact factor: 6.725

10.  ATP hydrolysis in the betaTP and betaDP catalytic sites of F1-ATPase.

Authors:  Markus Dittrich; Shigehiko Hayashi; Klaus Schulten
Journal:  Biophys J       Date:  2004-08-17       Impact factor: 4.033

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