Literature DB >> 21377478

Design principles for robust biochemical reaction networks: what works, what cannot work, and what might almost work.

Guy Shinar1, Martin Feinberg.   

Abstract

We bring together recent results that connect the structure of a mass-action reaction network to its capacity for concentration robustness - that is, its capacity to keep the concentration of a critical bio-active species within narrow limits, even against large fluctuations in the overall supply of the network's constituents.
Copyright © 2011 Elsevier Inc. All rights reserved.

Entities:  

Mesh：

Year:  2011        PMID： 21377478      PMCID： PMC3086454          DOI： 10.1016/j.mbs.2011.02.012

Source DB:  PubMed          Journal:  Math Biosci        ISSN： 0025-5564            Impact factor:   2.144


  30 in total

1.  Robust perfect adaptation in bacterial chemotaxis through integral feedback control.

Authors:  T M Yi; Y Huang; M I Simon; J Doyle
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

2.  The segment polarity network is a robust developmental module.

Authors:  G von Dassow; E Meir; E M Munro; G M Odell
Journal:  Nature       Date:  2000-07-13       Impact factor: 49.962

3.  Models of eukaryotic gradient sensing: application to chemotaxis of amoebae and neutrophils.

Authors:  Andre Levchenko; Pablo A Iglesias
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

Review 4.  Reverse engineering of biological complexity.

Authors:  Marie E Csete; John C Doyle
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

Review 5.  Two-component signal transduction.

Authors:  A M Stock; V L Robinson; P N Goudreau
Journal:  Annu Rev Biochem       Date:  2000       Impact factor: 23.643

Review 6.  Perspective: Evolution and detection of genetic robustness.

Authors:  J Arjan G M de Visser; Joachim Hermisson; Günter P Wagner; Lauren Ancel Meyers; Homayoun Bagheri-Chaichian; Jeffrey L Blanchard; Lin Chao; James M Cheverud; Santiago F Elena; Walter Fontana; Greg Gibson; Thomas F Hansen; David Krakauer; Richard C Lewontin; Charles Ofria; Sean H Rice; George von Dassow; Andreas Wagner; Michael C Whitlock
Journal:  Evolution       Date:  2003-09       Impact factor: 3.694

7.  Self-enhanced ligand degradation underlies robustness of morphogen gradients.

Authors:  Avigdor Eldar; Dalia Rosin; Ben-Zion Shilo; Naama Barkai
Journal:  Dev Cell       Date:  2003-10       Impact factor: 12.270

8.  Structural sources of robustness in biochemical reaction networks.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Science       Date:  2010-03-12       Impact factor: 47.728

9.  Robustness of the BMP morphogen gradient in Drosophila embryonic patterning.

Authors:  Avigdor Eldar; Ruslan Dorfman; Daniel Weiss; Hilary Ashe; Ben-Zion Shilo; Naama Barkai
Journal:  Nature       Date:  2002-09-19       Impact factor: 49.962

10.  Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system.

Authors:  Eric Batchelor; Mark Goulian
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-09       Impact factor: 11.205
View more
  8 in total

1.  Concordant chemical reaction networks.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2012-05-30       Impact factor: 2.144

2.  Concordant chemical reaction networks and the Species-Reaction Graph.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2012-08-21       Impact factor: 2.144

3.  Dimerization and bifunctionality confer robustness to the isocitrate dehydrogenase regulatory system in Escherichia coli.

Authors:  Joseph P Dexter; Jeremy Gunawardena
Journal:  J Biol Chem       Date:  2012-11-28       Impact factor: 5.157

4.  Symmetry breaking meets multisite modification.

Authors:  Vaidhiswaran Ramesh; J Krishnan
Journal:  Elife       Date:  2021-05-21       Impact factor: 8.140

5.  Maximization of information transmission influences selection of native phosphorelay architectures.

Authors:  Rui Alves; Baldiri Salvadó; Ron Milo; Ester Vilaprinyo; Albert Sorribas
Journal:  PeerJ       Date:  2021-06-10       Impact factor: 2.984

6.  Dual regulation of gene expression mediated by extended MAPK activation and salicylic acid contributes to robust innate immunity in Arabidopsis thaliana.

Authors:  Kenichi Tsuda; Akira Mine; Gerit Bethke; Daisuke Igarashi; Christopher J Botanga; Yayoi Tsuda; Jane Glazebrook; Masanao Sato; Fumiaki Katagiri
Journal:  PLoS Genet       Date:  2013-12-12       Impact factor: 5.917

Review 7.  Reverse engineering and identification in systems biology: strategies, perspectives and challenges.

Authors:  Alejandro F Villaverde; Julio R Banga
Journal:  J R Soc Interface       Date:  2013-12-04       Impact factor: 4.118

8.  A network property necessary for concentration robustness.

Authors:  Jeanne M O Eloundou-Mbebi; Anika Küken; Nooshin Omranian; Sabrina Kleessen; Jost Neigenfind; Georg Basler; Zoran Nikoloski
Journal:  Nat Commun       Date:  2016-10-19       Impact factor: 14.919
  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.